Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.136e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-206ENST00000445745 2570 ntTSL 1 (best)14.44□□□□□ -0.16e-6■□□□□ 8.7
LSM11P83369 TPTEP1-202ENST00000400593 1430 ntTSL 1 (best)14.32□□□□□ -0.122e-8■□□□□ 8.7
LSM11P83369 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.16□□□□□ -0.146e-6■□□□□ 8.7
LSM11P83369 TMEM74B-202ENST00000429036 983 ntAPPRIS ALT2 TSL 314.14□□□□□ -0.156e-6■□□□□ 8.7
LSM11P83369 RREB1-205ENST00000467782 243 ntTSL 513.9□□□□□ -0.186e-6■□□□□ 8.7
LSM11P83369 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.17□□□□□ -0.36e-6■□□□□ 8.7
LSM11P83369 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.06□□□□□ -0.326e-6■□□□□ 8.7
LSM11P83369 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.496e-6■□□□□ 8.7
LSM11P83369 TPTEP1-204ENST00000426585 5725 ntTSL 1 (best)11.43□□□□□ -0.582e-8■□□□□ 8.7
LSM11P83369 PAX8-AS1-205ENST00000437551 2390 ntTSL 5 BASIC11.04□□□□□ -0.646e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-217ENST00000617509 627 ntTSL 4 BASIC10.96□□□□□ -0.656e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC10.84□□□□□ -0.676e-6■□□□□ 8.7
LSM11P83369 AP000547.3-203ENST00000591299 751 ntTSL 2 BASIC10.51□□□□□ -0.732e-8■□□□□ 8.7
LSM11P83369 PAX8-AS1-215ENST00000616073 512 ntTSL 49.19□□□□□ -0.946e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-207ENST00000451179 1196 ntTSL 1 (best)8.77□□□□□ -1.016e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-211ENST00000555766 1499 ntTSL 28.21□□□□□ -1.096e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-212ENST00000556070 567 ntTSL 48.04□□□□□ -1.126e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-201ENST00000333145 2319 ntTSL 2 BASIC8.02□□□□□ -1.136e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-208ENST00000456685 1207 ntTSL 1 (best) BASIC7.77□□□□□ -1.176e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-214ENST00000613966 3231 nt7.75□□□□□ -1.176e-6■□□□□ 8.7
LSM11P83369 RREB1-207ENST00000475946 9067 ntTSL 1 (best)7.72□□□□□ -1.176e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-210ENST00000553869 560 ntTSL 57.15□□□□□ -1.266e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.25□□□□□ -1.416e-6■□□□□ 8.7
LSM11P83369 PAX8-AS1-220ENST00000624706 434 ntTSL 55.68□□□□□ -1.56e-6■□□□□ 8.7
LSM11P83369 UQCRC2-201ENST00000268379 2615 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.839e-21■□□□□ 8.7
LSM11P83369 UQCRC2-205ENST00000563898 1406 ntTSL 57.24□□□□□ -1.259e-21■□□□□ 8.7
LSM11P83369 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC7.19□□□□□ -1.269e-21■□□□□ 8.7
LSM11P83369 UQCRC2-203ENST00000561798 699 ntTSL 26.18□□□□□ -1.429e-21■□□□□ 8.7
LSM11P83369 FTCD-210ENST00000488577 447 ntTSL 317■□□□□ 0.314e-11■□□□□ 8.7
LSM11P83369 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.359e-8■□□□□ 8.7
LSM11P83369 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.219e-8■□□□□ 8.7
LSM11P83369 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.199e-8■□□□□ 8.7
LSM11P83369 ABHD14B-207ENST00000487005 1998 ntTSL 216.15■□□□□ 0.189e-8■□□□□ 8.7
LSM11P83369 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.71□□□□□ -0.059e-8■□□□□ 8.7
LSM11P83369 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.23□□□□□ -0.299e-8■□□□□ 8.7
LSM11P83369 PCBP4-213ENST00000489595 539 ntTSL 410.15□□□□□ -0.789e-8■□□□□ 8.7
LSM11P83369 NRBP2-208ENST00000532940 1782 ntTSL 1 (best)22.29■■□□□ 1.163e-8■□□□□ 8.6
LSM11P83369 NRBP2-205ENST00000530123 925 ntTSL 1 (best)21.88■■□□□ 1.093e-8■□□□□ 8.6
LSM11P83369 NRBP2-210ENST00000533846 1623 ntTSL 1 (best)21.48■■□□□ 1.033e-8■□□□□ 8.6
LSM11P83369 TRMU-204ENST00000441818 1793 ntTSL 1 (best)19.53■□□□□ 0.723e-8■□□□□ 8.6
LSM11P83369 TRMU-207ENST00000457572 1882 ntTSL 219.24■□□□□ 0.673e-8■□□□□ 8.6
LSM11P83369 TRMU-205ENST00000453630 1775 ntTSL 218.68■□□□□ 0.583e-8■□□□□ 8.6
LSM11P83369 TRMU-203ENST00000381021 1830 ntTSL 218.47■□□□□ 0.553e-8■□□□□ 8.6
LSM11P83369 TRMU-206ENST00000456595 1688 ntTSL 1 (best)18.43■□□□□ 0.543e-8■□□□□ 8.6
LSM11P83369 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.533e-8■□□□□ 8.6
LSM11P83369 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.393e-8■□□□□ 8.6
LSM11P83369 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.87■□□□□ 0.293e-8■□□□□ 8.6
LSM11P83369 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.163e-8■□□□□ 8.6
LSM11P83369 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.54■□□□□ 0.083e-8■□□□□ 8.6
LSM11P83369 TRMU-210ENST00000470831 1860 ntTSL 215.33■□□□□ 0.053e-8■□□□□ 8.6
LSM11P83369 PCGF3-213ENST00000620529 1899 ntBASIC15.16■□□□□ 0.023e-8■□□□□ 8.6
LSM11P83369 TRMU-216ENST00000491612 2933 ntTSL 213.93□□□□□ -0.183e-8■□□□□ 8.6
LSM11P83369 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.193e-8■□□□□ 8.6
LSM11P83369 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.243e-8■□□□□ 8.6
LSM11P83369 TRMU-214ENST00000485559 2653 ntTSL 213.37□□□□□ -0.273e-8■□□□□ 8.6
LSM11P83369 NAALADL1-220ENST00000533753 690 ntTSL 512.02□□□□□ -0.493e-8■□□□□ 8.6
LSM11P83369 NAALADL1-217ENST00000532450 635 ntTSL 510.59□□□□□ -0.713e-8■□□□□ 8.6
LSM11P83369 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)11.48□□□□□ -0.576e-20■□□□□ 8.6
LSM11P83369 SRSF1-207ENST00000584668 758 ntTSL 37.53□□□□□ -1.26e-20■□□□□ 8.6
LSM11P83369 YBX3-213ENST00000542641 669 ntTSL 411.21□□□□□ -0.614e-8■□□□□ 8.6
LSM11P83369 YBX3-207ENST00000539204 649 ntTSL 310.79□□□□□ -0.684e-8■□□□□ 8.6
LSM11P83369 YBX3-217ENST00000546164 805 ntTSL 210.74□□□□□ -0.694e-8■□□□□ 8.6
LSM11P83369 YBX3-212ENST00000542002 952 ntTSL 28.63□□□□□ -1.034e-8■□□□□ 8.6
LSM11P83369 YBX3-211ENST00000541351 717 ntTSL 48.61□□□□□ -1.034e-8■□□□□ 8.6
LSM11P83369 YBX3-215ENST00000544504 583 ntTSL 38.54□□□□□ -1.044e-8■□□□□ 8.6
LSM11P83369 DDX5-209ENST00000578758 667 ntTSL 210.17□□□□□ -0.783e-9■□□□□ 8.6
LSM11P83369 DDX5-216ENST00000581237 592 ntTSL 57.15□□□□□ -1.263e-9■□□□□ 8.6
LSM11P83369 SLC6A8-209ENST00000476466 470 ntTSL 312.29□□□□□ -0.442e-14■□□□□ 8.6
LSM11P83369 MINK1-203ENST00000453408 3939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.542e-9■□□□□ 8.6
LSM11P83369 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.456e-13■□□□□ 8.6
LSM11P83369 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.656e-13■□□□□ 8.6
LSM11P83369 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.44■□□□□ 0.222e-10■□□□□ 8.6
LSM11P83369 RBM39-232ENST00000481037 687 ntTSL 315.77■□□□□ 0.121e-13■□□□□ 8.6
LSM11P83369 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.31□□□□□ -0.121e-13■□□□□ 8.6
LSM11P83369 RBM39-215ENST00000442447 644 ntTSL 214.07□□□□□ -0.161e-13■□□□□ 8.6
LSM11P83369 RBM39-204ENST00000374038 1026 ntTSL 513.96□□□□□ -0.171e-13■□□□□ 8.6
LSM11P83369 RBM39-219ENST00000453310 1068 ntTSL 213.96□□□□□ -0.171e-13■□□□□ 8.6
LSM11P83369 RBM39-213ENST00000433027 611 ntTSL 513.87□□□□□ -0.191e-13■□□□□ 8.6
LSM11P83369 RBM39-207ENST00000412738 1018 ntTSL 311.92□□□□□ -0.51e-13■□□□□ 8.6
LSM11P83369 RBM39-209ENST00000416529 594 ntTSL 310.88□□□□□ -0.671e-13■□□□□ 8.6
LSM11P83369 RBM39-234ENST00000487604 370 ntTSL 310.77□□□□□ -0.691e-13■□□□□ 8.6
LSM11P83369 RBM39-231ENST00000477334 949 ntTSL 210.41□□□□□ -0.741e-13■□□□□ 8.6
LSM11P83369 RBM39-210ENST00000425184 526 ntTSL 39.94□□□□□ -0.821e-13■□□□□ 8.6
LSM11P83369 RBM39-211ENST00000426951 840 ntTSL 1 (best)9.38□□□□□ -0.911e-13■□□□□ 8.6
LSM11P83369 RBM39-218ENST00000449489 432 ntTSL 59.03□□□□□ -0.961e-13■□□□□ 8.6
LSM11P83369 RBM39-242ENST00000498280 444 ntTSL 38.47□□□□□ -1.051e-13■□□□□ 8.6
LSM11P83369 RBM39-214ENST00000434927 716 ntTSL 58.12□□□□□ -1.111e-13■□□□□ 8.6
LSM11P83369 RBM39-220ENST00000455343 441 ntTSL 57.72□□□□□ -1.171e-13■□□□□ 8.6
LSM11P83369 RBM39-208ENST00000416108 577 ntTSL 47.57□□□□□ -1.21e-13■□□□□ 8.6
LSM11P83369 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.032e-18■□□□□ 8.5
LSM11P83369 RNASET2-204ENST00000421787 1924 ntTSL 219.11■□□□□ 0.652e-18■□□□□ 8.5
LSM11P83369 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.11■□□□□ 0.492e-18■□□□□ 8.5
LSM11P83369 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.16■□□□□ 0.342e-18■□□□□ 8.5
LSM11P83369 RNASET2-201ENST00000028008 1220 ntTSL 516.4■□□□□ 0.222e-18■□□□□ 8.5
LSM11P83369 RNASET2-207ENST00000478180 963 ntTSL 515.89■□□□□ 0.132e-18■□□□□ 8.5
LSM11P83369 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -02e-18■□□□□ 8.5
LSM11P83369 RNASET2-212ENST00000510083 2280 ntTSL 215.05■□□□□ -02e-18■□□□□ 8.5
LSM11P83369 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.432e-18■□□□□ 8.5
LSM11P83369 ATG4D-209ENST00000588857 1555 ntTSL 1 (best)20.28■□□□□ 0.842e-15■□□□□ 8.5
Retrieved 100 of 11,495 protein–RNA pairs in 45.9 ms