RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
YBX3-212ENST00000542002 CCDC180Q9P1Z9 1646 aa20.94■□□□□ 0.94
YBX3-212ENST00000542002 ABCC9O60706 1549 aa20.71■□□□□ 0.91
YBX3-212ENST00000542002 AEBP2Q6ZN18 517 aaPredicted RBP20.53■□□□□ 0.88
YBX3-212ENST00000542002 DCAF8L2P0C7V8 631 aa19.94■□□□□ 0.78
YBX3-212ENST00000542002 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
YBX3-212ENST00000542002 NACADO15069 1562 aa19.78■□□□□ 0.76
YBX3-212ENST00000542002 ZCCHC6Q5VYS8 1495 aaKnown RBP19.72■□□□□ 0.75
YBX3-212ENST00000542002 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
YBX3-212ENST00000542002 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
YBX3-212ENST00000542002 PABPN1Q86U42 306 aaKnown RBP eCLIP19.45■□□□□ 0.75e-7■□□□□ 10.2
YBX3-212ENST00000542002 UNC13AQ9UPW8 1703 aa19.31■□□□□ 0.68
YBX3-212ENST00000542002 BICRAQ9NZM4 1560 aa19.28■□□□□ 0.68
YBX3-212ENST00000542002 SCRIBQ14160 1630 aa19.22■□□□□ 0.67
YBX3-212ENST00000542002 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
YBX3-212ENST00000542002 CHIC1Q5VXU3 224 aa19.14■□□□□ 0.65
YBX3-212ENST00000542002 SHROOM4Q9ULL8 1493 aa18.94■□□□□ 0.62
YBX3-212ENST00000542002 EIF4G1Q04637 1599 aaKnown RBP18.73■□□□□ 0.59
YBX3-212ENST00000542002 CC2D2AQ9P2K1 1620 aa18.67■□□□□ 0.58
YBX3-212ENST00000542002 CECR2Q9BXF3 1484 aa18.58■□□□□ 0.57
YBX3-212ENST00000542002 SMARCA4P51532 1647 aa18.35■□□□□ 0.53
YBX3-212ENST00000542002 ATAD2BQ9ULI0 1458 aa18.33■□□□□ 0.53
YBX3-212ENST00000542002 NCAPD3P42695 1498 aa18.33■□□□□ 0.52
YBX3-212ENST00000542002 BAZ1AQ9NRL2 1556 aaPredicted RBP18.32■□□□□ 0.52
YBX3-212ENST00000542002 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
YBX3-212ENST00000542002 SMARCA2P51531 1590 aa18.21■□□□□ 0.51
YBX3-212ENST00000542002 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
YBX3-212ENST00000542002 HMGXB3Q12766 1538 aa18.14■□□□□ 0.49
YBX3-212ENST00000542002 BAZ1BQ9UIG0 1483 aaKnown RBP18.14■□□□□ 0.49
YBX3-212ENST00000542002 RSF1Q96T23 1441 aaPredicted RBP18.12■□□□□ 0.49
YBX3-212ENST00000542002 WIZO95785 1651 aa18.07■□□□□ 0.48
YBX3-212ENST00000542002 NESP48681 1621 aa17.94■□□□□ 0.46
YBX3-212ENST00000542002 TOP2AP11388 1531 aaKnown RBP17.83■□□□□ 0.45
YBX3-212ENST00000542002 CADPSQ9ULU8 1353 aa17.8■□□□□ 0.44
YBX3-212ENST00000542002 ERCC6Q03468 1493 aa17.78■□□□□ 0.44
YBX3-212ENST00000542002 LAMC3Q9Y6N6 1575 aa17.75■□□□□ 0.43
YBX3-212ENST00000542002 CCDC88BA6NC98 1476 aa17.72■□□□□ 0.43
YBX3-212ENST00000542002 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
YBX3-212ENST00000542002 SUPT5HO00267 1087 aaKnown RBP17.68■□□□□ 0.42
YBX3-212ENST00000542002 CFTRP13569 1480 aa17.68■□□□□ 0.42
YBX3-212ENST00000542002 KIF21AQ7Z4S6 1674 aa17.59■□□□□ 0.41
YBX3-212ENST00000542002 CUX2O14529 1486 aa17.59■□□□□ 0.41
YBX3-212ENST00000542002 FANCD2Q9BXW9 1451 aa17.56■□□□□ 0.4
YBX3-212ENST00000542002 SENP3Q9H4L4 574 aaPredicted RBP17.56■□□□□ 0.4
YBX3-212ENST00000542002 THOC2Q8NI27 1593 aaKnown RBP17.56■□□□□ 0.4
YBX3-212ENST00000542002 MRC2Q9UBG0 1479 aa17.5■□□□□ 0.39
YBX3-212ENST00000542002 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
YBX3-212ENST00000542002 WDR62O43379 1518 aa17.43■□□□□ 0.38
YBX3-212ENST00000542002 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
YBX3-212ENST00000542002 PRDM2Q13029 1718 aa17.33■□□□□ 0.37
YBX3-212ENST00000542002 TOPBP1Q92547 1522 aa17.28■□□□□ 0.36
YBX3-212ENST00000542002 PHF23Q9BUL5 403 aaPredicted RBP17.25■□□□□ 0.35
YBX3-212ENST00000542002 DNAJC5Q9H3Z4 198 aa17.24■□□□□ 0.35
YBX3-212ENST00000542002 ABCC8Q09428 1581 aa17.21■□□□□ 0.35
YBX3-212ENST00000542002 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
YBX3-212ENST00000542002 ZNF608Q9ULD9 1512 aaPredicted RBP17.16■□□□□ 0.34
YBX3-212ENST00000542002 IFT140Q96RY7 1462 aa17.16■□□□□ 0.34
YBX3-212ENST00000542002 CUX1P39880 1505 aa17.16■□□□□ 0.34
YBX3-212ENST00000542002 POLA1P09884 1462 aaPredicted RBP17.14■□□□□ 0.33
YBX3-212ENST00000542002 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
YBX3-212ENST00000542002 SOGA1O94964 1423 aa17.1■□□□□ 0.33
YBX3-212ENST00000542002 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
YBX3-212ENST00000542002 AQRO60306 1485 aaKnown RBP eCLIP17.08■□□□□ 0.325e-7■■■■■ 28.1
YBX3-212ENST00000542002 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
YBX3-212ENST00000542002 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
YBX3-212ENST00000542002 WRNQ14191 1432 aaPredicted RBP eCLIP17.02■□□□□ 0.31
YBX3-212ENST00000542002 SYNJ1O43426 1573 aa16.98■□□□□ 0.31
YBX3-212ENST00000542002 EIF4G3O43432 1585 aaKnown RBP16.98■□□□□ 0.31
YBX3-212ENST00000542002 OSCARQ8IYS5 282 aa16.97■□□□□ 0.31
YBX3-212ENST00000542002 TOP2BQ02880 1626 aa16.94■□□□□ 0.3
YBX3-212ENST00000542002 BIVM-ERCC5R4GMW8 1640 aa16.91■□□□□ 0.3
YBX3-212ENST00000542002 ABCA10Q8WWZ4 1543 aa16.91■□□□□ 0.3
YBX3-212ENST00000542002 FBLN2P98095 1184 aa16.87■□□□□ 0.29
YBX3-212ENST00000542002 GAPVD1Q14C86 1478 aa16.86■□□□□ 0.29
YBX3-212ENST00000542002 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
YBX3-212ENST00000542002 GRIN2BQ13224 1484 aa16.85■□□□□ 0.29
YBX3-212ENST00000542002 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
YBX3-212ENST00000542002 CHMP7Q8WUX9 453 aaPredicted RBP16.81■□□□□ 0.28
YBX3-212ENST00000542002 ABCA5Q8WWZ7 1642 aa16.8■□□□□ 0.28
YBX3-212ENST00000542002 MAGI1Q96QZ7 1491 aaPredicted RBP16.78■□□□□ 0.28
YBX3-212ENST00000542002 SYNJ2O15056 1496 aa16.74■□□□□ 0.27
YBX3-212ENST00000542002 CHD1O14646 1710 aa16.74■□□□□ 0.27
YBX3-212ENST00000542002 PBRM1Q86U86 1689 aa16.72■□□□□ 0.27
YBX3-212ENST00000542002 IGF1RP08069 1367 aa16.69■□□□□ 0.26
YBX3-212ENST00000542002 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
YBX3-212ENST00000542002 FHAD1B1AJZ9 1412 aa16.66■□□□□ 0.26
YBX3-212ENST00000542002 TRIM41Q8WV44 630 aa16.66■□□□□ 0.26
YBX3-212ENST00000542002 KIF27Q86VH2 1401 aa16.65■□□□□ 0.26
YBX3-212ENST00000542002 ADAMTS12P58397 1594 aa16.64■□□□□ 0.25
YBX3-212ENST00000542002 GRIN2AQ12879 1464 aa16.63■□□□□ 0.25
YBX3-212ENST00000542002 CLASP1Q7Z460 1538 aa16.62■□□□□ 0.25
YBX3-212ENST00000542002 ARHGEF11O15085 1522 aa16.61■□□□□ 0.25
YBX3-212ENST00000542002 RUSC2Q8N2Y8 1516 aa16.61■□□□□ 0.25
YBX3-212ENST00000542002 RIMBP3CA6NJZ7 1639 aa16.6■□□□□ 0.25
YBX3-212ENST00000542002 RIMBP3BA6NNM3 1639 aa16.6■□□□□ 0.25
YBX3-212ENST00000542002 RIMBP3Q9UFD9 1639 aa16.6■□□□□ 0.25
YBX3-212ENST00000542002 NUP160Q12769 1436 aa16.59■□□□□ 0.25
YBX3-212ENST00000542002 CYB5RLQ6IPT4 315 aa16.57■□□□□ 0.24
YBX3-212ENST00000542002 CEP170Q5SW79 1584 aa16.56■□□□□ 0.24
YBX3-212ENST00000542002 CARMIL1Q5VZK9 1371 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 228.3 ms