Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
SMC1BQ8NDV3 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.6■■■□□ 2.49
SMC1BQ8NDV3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
SMC1BQ8NDV3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.59■■■□□ 2.49
SMC1BQ8NDV3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SMC1BQ8NDV3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SMC1BQ8NDV3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.58■■■□□ 2.49
SMC1BQ8NDV3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC30.58■■■□□ 2.49
SMC1BQ8NDV3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.58■■■□□ 2.49
SMC1BQ8NDV3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SMC1BQ8NDV3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.57■■■□□ 2.48
SMC1BQ8NDV3 AC139795.1-202ENST00000500444 432 ntBASIC30.57■■■□□ 2.48
SMC1BQ8NDV3 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.57■■■□□ 2.48
SMC1BQ8NDV3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
SMC1BQ8NDV3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.56■■■□□ 2.48
SMC1BQ8NDV3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.56■■■□□ 2.48
SMC1BQ8NDV3 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SMC1BQ8NDV3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
SMC1BQ8NDV3 AC026202.3-201ENST00000600805 1127 ntBASIC30.56■■■□□ 2.48
SMC1BQ8NDV3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SMC1BQ8NDV3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SMC1BQ8NDV3 AC010864.1-201ENST00000609407 1511 ntBASIC30.55■■■□□ 2.48
SMC1BQ8NDV3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.55■■■□□ 2.48
SMC1BQ8NDV3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
SMC1BQ8NDV3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
SMC1BQ8NDV3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
SMC1BQ8NDV3 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC1BQ8NDV3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC1BQ8NDV3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC1BQ8NDV3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
SMC1BQ8NDV3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC1BQ8NDV3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
SMC1BQ8NDV3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC30.53■■■□□ 2.48
SMC1BQ8NDV3 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
SMC1BQ8NDV3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
SMC1BQ8NDV3 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMC1BQ8NDV3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.52■■■□□ 2.48
SMC1BQ8NDV3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SMC1BQ8NDV3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMC1BQ8NDV3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMC1BQ8NDV3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.47
SMC1BQ8NDV3 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
SMC1BQ8NDV3 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SMC1BQ8NDV3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.5■■■□□ 2.47
SMC1BQ8NDV3 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
SMC1BQ8NDV3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
SMC1BQ8NDV3 SMPD5-203ENST00000639008 1464 ntBASIC30.48■■■□□ 2.47
SMC1BQ8NDV3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
SMC1BQ8NDV3 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
SMC1BQ8NDV3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
SMC1BQ8NDV3 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SMC1BQ8NDV3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SMC1BQ8NDV3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.46■■■□□ 2.47
SMC1BQ8NDV3 MIR4508-201ENST00000584178 70 ntBASIC30.46■■■□□ 2.47
SMC1BQ8NDV3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.46■■■□□ 2.47
SMC1BQ8NDV3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SMC1BQ8NDV3 PVT1_1.1-201ENST00000615125 194 ntBASIC30.45■■■□□ 2.47
SMC1BQ8NDV3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SMC1BQ8NDV3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.44■■■□□ 2.46
SMC1BQ8NDV3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
SMC1BQ8NDV3 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.44■■■□□ 2.46
SMC1BQ8NDV3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SMC1BQ8NDV3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SMC1BQ8NDV3 MIR638-201ENST00000385237 100 ntBASIC30.43■■■□□ 2.46
SMC1BQ8NDV3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.43■■■□□ 2.46
SMC1BQ8NDV3 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
SMC1BQ8NDV3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.43■■■□□ 2.46
SMC1BQ8NDV3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.43■■■□□ 2.46
SMC1BQ8NDV3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
SMC1BQ8NDV3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 SPCS2P3-201ENST00000500401 656 ntBASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.42■■■□□ 2.46
SMC1BQ8NDV3 AC127502.1-201ENST00000399971 1502 ntBASIC30.41■■■□□ 2.46
SMC1BQ8NDV3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.4■■■□□ 2.46
SMC1BQ8NDV3 AL031848.2-201ENST00000607670 837 ntBASIC30.4■■■□□ 2.46
SMC1BQ8NDV3 MIR6765-201ENST00000614092 87 ntBASIC30.4■■■□□ 2.46
SMC1BQ8NDV3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SMC1BQ8NDV3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
SMC1BQ8NDV3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
SMC1BQ8NDV3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
SMC1BQ8NDV3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
SMC1BQ8NDV3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.38■■■□□ 2.45
SMC1BQ8NDV3 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.37■■■□□ 2.45
SMC1BQ8NDV3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.37■■■□□ 2.45
SMC1BQ8NDV3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.37■■■□□ 2.45
SMC1BQ8NDV3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
SMC1BQ8NDV3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SMC1BQ8NDV3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.35■■■□□ 2.45
SMC1BQ8NDV3 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.35■■■□□ 2.45
SMC1BQ8NDV3 AC103724.3-201ENST00000564481 992 ntBASIC30.35■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms