Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.1■■□□□ 1.61
LDB1Q86U70 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.1■■□□□ 1.61
LDB1Q86U70 LINC01971-201ENST00000617888 1048 ntBASIC25.1■■□□□ 1.61
LDB1Q86U70 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
LDB1Q86U70 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.09■■□□□ 1.61
LDB1Q86U70 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
LDB1Q86U70 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LDB1Q86U70 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LDB1Q86U70 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
LDB1Q86U70 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.08■■□□□ 1.61
LDB1Q86U70 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.08■■□□□ 1.61
LDB1Q86U70 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
LDB1Q86U70 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
LDB1Q86U70 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
LDB1Q86U70 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
LDB1Q86U70 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.07■■□□□ 1.6
LDB1Q86U70 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
LDB1Q86U70 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.07■■□□□ 1.6
LDB1Q86U70 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.06■■□□□ 1.6
LDB1Q86U70 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
LDB1Q86U70 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
LDB1Q86U70 ABHD17AP4-201ENST00000411545 909 ntBASIC25.06■■□□□ 1.6
LDB1Q86U70 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
LDB1Q86U70 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
LDB1Q86U70 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.05■■□□□ 1.6
LDB1Q86U70 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
LDB1Q86U70 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.05■■□□□ 1.6
LDB1Q86U70 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.05■■□□□ 1.6
LDB1Q86U70 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.05■■□□□ 1.6
LDB1Q86U70 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
LDB1Q86U70 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
LDB1Q86U70 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
LDB1Q86U70 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
LDB1Q86U70 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LDB1Q86U70 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LDB1Q86U70 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
LDB1Q86U70 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
LDB1Q86U70 DUX4L11-201ENST00000611504 1267 ntBASIC25.03■■□□□ 1.6
LDB1Q86U70 DUX4L12-201ENST00000614593 1267 ntBASIC25.03■■□□□ 1.6
LDB1Q86U70 DUX4L14-201ENST00000621227 1267 ntBASIC25.03■■□□□ 1.6
LDB1Q86U70 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.03■■□□□ 1.6
LDB1Q86U70 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
LDB1Q86U70 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.02■■□□□ 1.6
LDB1Q86U70 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
LDB1Q86U70 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
LDB1Q86U70 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
LDB1Q86U70 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L13-201ENST00000554103 1267 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L15-201ENST00000611059 1267 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L23-201ENST00000615195 1269 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L24-201ENST00000617576 1269 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L22-201ENST00000618238 1269 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L20-201ENST00000619712 1269 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L21-201ENST00000622058 1269 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L10-201ENST00000622460 1267 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 DUX4L25-201ENST00000624915 1269 ntBASIC25.01■■□□□ 1.59
LDB1Q86U70 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LDB1Q86U70 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
LDB1Q86U70 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
LDB1Q86U70 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
LDB1Q86U70 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
LDB1Q86U70 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
LDB1Q86U70 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LDB1Q86U70 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
LDB1Q86U70 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LDB1Q86U70 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
LDB1Q86U70 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.99■■□□□ 1.59
LDB1Q86U70 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
LDB1Q86U70 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.99■■□□□ 1.59
LDB1Q86U70 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
LDB1Q86U70 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
LDB1Q86U70 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.98■■□□□ 1.59
LDB1Q86U70 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
LDB1Q86U70 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
LDB1Q86U70 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
LDB1Q86U70 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
LDB1Q86U70 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
LDB1Q86U70 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.97■■□□□ 1.59
LDB1Q86U70 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
LDB1Q86U70 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.96■■□□□ 1.59
LDB1Q86U70 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
LDB1Q86U70 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.96■■□□□ 1.59
LDB1Q86U70 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.96■■□□□ 1.59
LDB1Q86U70 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
LDB1Q86U70 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
LDB1Q86U70 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
LDB1Q86U70 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.94■■□□□ 1.58
LDB1Q86U70 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.94■■□□□ 1.58
LDB1Q86U70 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.94■■□□□ 1.58
LDB1Q86U70 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.94■■□□□ 1.58
LDB1Q86U70 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.94■■□□□ 1.58
LDB1Q86U70 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
LDB1Q86U70 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
LDB1Q86U70 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
LDB1Q86U70 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
LDB1Q86U70 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
LDB1Q86U70 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
LDB1Q86U70 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
LDB1Q86U70 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.91■■□□□ 1.58
LDB1Q86U70 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms