Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
KRT40Q6A162 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.18■■■□□ 2.26
KRT40Q6A162 AC110285.7-201ENST00000624417 1536 ntBASIC29.18■■■□□ 2.26
KRT40Q6A162 AC018358.1-201ENST00000631079 1402 ntBASIC29.18■■■□□ 2.26
KRT40Q6A162 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.17■■■□□ 2.26
KRT40Q6A162 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
KRT40Q6A162 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
KRT40Q6A162 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
KRT40Q6A162 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
KRT40Q6A162 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC29.15■■■□□ 2.26
KRT40Q6A162 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
KRT40Q6A162 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.15■■■□□ 2.26
KRT40Q6A162 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.15■■■□□ 2.26
KRT40Q6A162 PEX7-203ENST00000541292 945 ntTSL 5 BASIC29.14■■■□□ 2.26
KRT40Q6A162 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.14■■■□□ 2.25
KRT40Q6A162 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
KRT40Q6A162 LINC01971-201ENST00000617888 1048 ntBASIC29.12■■■□□ 2.25
KRT40Q6A162 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
KRT40Q6A162 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
KRT40Q6A162 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
KRT40Q6A162 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
KRT40Q6A162 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
KRT40Q6A162 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
KRT40Q6A162 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.1■■■□□ 2.25
KRT40Q6A162 AL121749.1-202ENST00000609313 2153 ntBASIC29.1■■■□□ 2.25
KRT40Q6A162 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
KRT40Q6A162 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
KRT40Q6A162 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.08■■■□□ 2.25
KRT40Q6A162 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC29.08■■■□□ 2.25
KRT40Q6A162 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.08■■■□□ 2.25
KRT40Q6A162 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
KRT40Q6A162 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
KRT40Q6A162 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.08■■■□□ 2.25
KRT40Q6A162 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
KRT40Q6A162 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.07■■■□□ 2.24
KRT40Q6A162 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.07■■■□□ 2.24
KRT40Q6A162 CR559946.2-201ENST00000623684 991 ntBASIC29.07■■■□□ 2.24
KRT40Q6A162 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.07■■■□□ 2.24
KRT40Q6A162 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
KRT40Q6A162 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.05■■■□□ 2.24
KRT40Q6A162 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
KRT40Q6A162 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.05■■■□□ 2.24
KRT40Q6A162 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
KRT40Q6A162 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC29.04■■■□□ 2.24
KRT40Q6A162 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
KRT40Q6A162 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
KRT40Q6A162 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.03■■■□□ 2.24
KRT40Q6A162 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC29.03■■■□□ 2.24
KRT40Q6A162 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC29.03■■■□□ 2.24
KRT40Q6A162 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
KRT40Q6A162 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
KRT40Q6A162 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
KRT40Q6A162 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
KRT40Q6A162 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC29.02■■■□□ 2.24
KRT40Q6A162 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC29.02■■■□□ 2.24
KRT40Q6A162 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
KRT40Q6A162 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
KRT40Q6A162 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
KRT40Q6A162 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
KRT40Q6A162 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
KRT40Q6A162 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
KRT40Q6A162 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.01■■■□□ 2.23
KRT40Q6A162 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
KRT40Q6A162 DUX4L11-201ENST00000611504 1267 ntBASIC29.01■■■□□ 2.23
KRT40Q6A162 DUX4L12-201ENST00000614593 1267 ntBASIC29.01■■■□□ 2.23
KRT40Q6A162 DUX4L14-201ENST00000621227 1267 ntBASIC29.01■■■□□ 2.23
KRT40Q6A162 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
KRT40Q6A162 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L13-201ENST00000554103 1267 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L15-201ENST00000611059 1267 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L23-201ENST00000615195 1269 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L24-201ENST00000617576 1269 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L22-201ENST00000618238 1269 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L20-201ENST00000619712 1269 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L21-201ENST00000622058 1269 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L10-201ENST00000622460 1267 ntBASIC29■■■□□ 2.23
KRT40Q6A162 DUX4L25-201ENST00000624915 1269 ntBASIC29■■■□□ 2.23
KRT40Q6A162 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
KRT40Q6A162 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.99■■■□□ 2.23
KRT40Q6A162 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.99■■■□□ 2.23
KRT40Q6A162 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
KRT40Q6A162 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
KRT40Q6A162 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
KRT40Q6A162 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
KRT40Q6A162 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
KRT40Q6A162 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28.98■■■□□ 2.23
KRT40Q6A162 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.97■■■□□ 2.23
KRT40Q6A162 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
KRT40Q6A162 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.97■■■□□ 2.23
KRT40Q6A162 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
KRT40Q6A162 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC28.96■■■□□ 2.23
KRT40Q6A162 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
KRT40Q6A162 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.96■■■□□ 2.23
KRT40Q6A162 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
KRT40Q6A162 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
KRT40Q6A162 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.22
KRT40Q6A162 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
KRT40Q6A162 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.95■■■□□ 2.22
KRT40Q6A162 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
KRT40Q6A162 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.94■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms