Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAB3DO95716 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAB3DO95716 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAB3DO95716 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAB3DO95716 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAB3DO95716 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
RAB3DO95716 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAB3DO95716 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAB3DO95716 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAB3DO95716 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RAB3DO95716 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
RAB3DO95716 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RAB3DO95716 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAB3DO95716 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RAB3DO95716 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RAB3DO95716 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
RAB3DO95716 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.24■□□□□ 0.99
RAB3DO95716 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RAB3DO95716 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
RAB3DO95716 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
RAB3DO95716 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB3DO95716 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB3DO95716 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RAB3DO95716 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.23■□□□□ 0.99
RAB3DO95716 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RAB3DO95716 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAB3DO95716 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAB3DO95716 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAB3DO95716 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAB3DO95716 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAB3DO95716 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAB3DO95716 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.21■□□□□ 0.99
RAB3DO95716 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAB3DO95716 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RAB3DO95716 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAB3DO95716 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAB3DO95716 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.2■□□□□ 0.98
RAB3DO95716 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAB3DO95716 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.2■□□□□ 0.98
RAB3DO95716 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.2■□□□□ 0.98
RAB3DO95716 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.2■□□□□ 0.98
RAB3DO95716 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RAB3DO95716 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
RAB3DO95716 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAB3DO95716 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.19■□□□□ 0.98
RAB3DO95716 AC018358.1-201ENST00000631079 1402 ntBASIC21.19■□□□□ 0.98
RAB3DO95716 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.18■□□□□ 0.98
RAB3DO95716 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RAB3DO95716 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.18■□□□□ 0.98
RAB3DO95716 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.18■□□□□ 0.98
RAB3DO95716 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RAB3DO95716 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RAB3DO95716 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.17■□□□□ 0.98
RAB3DO95716 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.17■□□□□ 0.98
RAB3DO95716 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
RAB3DO95716 AC093323.1-202ENST00000635031 2045 ntBASIC21.17■□□□□ 0.98
RAB3DO95716 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RAB3DO95716 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.16■□□□□ 0.98
RAB3DO95716 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RAB3DO95716 DUSP8P4-201ENST00000399538 1761 ntBASIC21.16■□□□□ 0.98
RAB3DO95716 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RAB3DO95716 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
RAB3DO95716 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
RAB3DO95716 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
RAB3DO95716 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAB3DO95716 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAB3DO95716 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAB3DO95716 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAB3DO95716 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAB3DO95716 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.15■□□□□ 0.98
RAB3DO95716 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.15■□□□□ 0.98
RAB3DO95716 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RAB3DO95716 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
RAB3DO95716 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.14■□□□□ 0.97
RAB3DO95716 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.14■□□□□ 0.97
RAB3DO95716 AC092803.2-201ENST00000564287 1899 ntBASIC21.13■□□□□ 0.97
RAB3DO95716 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RAB3DO95716 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RAB3DO95716 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RAB3DO95716 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RAB3DO95716 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RAB3DO95716 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAB3DO95716 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAB3DO95716 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RAB3DO95716 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.12■□□□□ 0.97
RAB3DO95716 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAB3DO95716 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAB3DO95716 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAB3DO95716 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAB3DO95716 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.11■□□□□ 0.97
RAB3DO95716 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.11■□□□□ 0.97
RAB3DO95716 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAB3DO95716 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.11■□□□□ 0.97
RAB3DO95716 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms