Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CPSF4O95639 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CPSF4O95639 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CPSF4O95639 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CPSF4O95639 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CPSF4O95639 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CPSF4O95639 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CPSF4O95639 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.81■■□□□ 1.4
CPSF4O95639 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CPSF4O95639 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CPSF4O95639 AC087741.3-201ENST00000624270 1347 ntBASIC23.81■■□□□ 1.4
CPSF4O95639 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.8■■□□□ 1.4
CPSF4O95639 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CPSF4O95639 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CPSF4O95639 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.8■■□□□ 1.4
CPSF4O95639 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CPSF4O95639 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.79■■□□□ 1.4
CPSF4O95639 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.79■■□□□ 1.4
CPSF4O95639 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CPSF4O95639 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.79■■□□□ 1.4
CPSF4O95639 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CPSF4O95639 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.79■■□□□ 1.4
CPSF4O95639 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
CPSF4O95639 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CPSF4O95639 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
CPSF4O95639 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
CPSF4O95639 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CPSF4O95639 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CPSF4O95639 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CPSF4O95639 AL162393.1-201ENST00000437852 946 ntBASIC23.77■■□□□ 1.4
CPSF4O95639 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.77■■□□□ 1.4
CPSF4O95639 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
CPSF4O95639 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CPSF4O95639 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CPSF4O95639 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CPSF4O95639 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.76■■□□□ 1.39
CPSF4O95639 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CPSF4O95639 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CPSF4O95639 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CPSF4O95639 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CPSF4O95639 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CPSF4O95639 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CPSF4O95639 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.75■■□□□ 1.39
CPSF4O95639 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.75■■□□□ 1.39
CPSF4O95639 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.75■■□□□ 1.39
CPSF4O95639 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CPSF4O95639 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.74■■□□□ 1.39
CPSF4O95639 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CPSF4O95639 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CPSF4O95639 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CPSF4O95639 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CPSF4O95639 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CPSF4O95639 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.73■■□□□ 1.39
CPSF4O95639 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CPSF4O95639 AC044849.2-201ENST00000606596 710 ntBASIC23.72■■□□□ 1.39
CPSF4O95639 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CPSF4O95639 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
CPSF4O95639 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CPSF4O95639 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.72■■□□□ 1.39
CPSF4O95639 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.71■■□□□ 1.39
CPSF4O95639 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.71■■□□□ 1.39
CPSF4O95639 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.71■■□□□ 1.39
CPSF4O95639 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.71■■□□□ 1.39
CPSF4O95639 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
CPSF4O95639 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.7■■□□□ 1.38
CPSF4O95639 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CPSF4O95639 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CPSF4O95639 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
CPSF4O95639 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.7■■□□□ 1.38
CPSF4O95639 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CPSF4O95639 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.69■■□□□ 1.38
CPSF4O95639 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CPSF4O95639 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPSF4O95639 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
CPSF4O95639 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CPSF4O95639 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPSF4O95639 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPSF4O95639 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPSF4O95639 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CPSF4O95639 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPSF4O95639 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.67■■□□□ 1.38
CPSF4O95639 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
CPSF4O95639 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.66■■□□□ 1.38
CPSF4O95639 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
CPSF4O95639 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
CPSF4O95639 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPSF4O95639 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CPSF4O95639 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
CPSF4O95639 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.64■■□□□ 1.37
CPSF4O95639 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
CPSF4O95639 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CPSF4O95639 AC110285.7-201ENST00000624417 1536 ntBASIC23.64■■□□□ 1.37
CPSF4O95639 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
CPSF4O95639 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.63■■□□□ 1.37
CPSF4O95639 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CPSF4O95639 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CPSF4O95639 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.62■■□□□ 1.37
CPSF4O95639 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CPSF4O95639 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CPSF4O95639 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms