Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC33.76■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC33.73■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC33.71■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC33.7■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.69■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC33.68■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC33.67■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RARRES2P2-201ENST00000394842 485 ntBASIC33.67■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC33.64■■■□□ 2.98
SENP3-EIF4A1A0A087X0R7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC33.63■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.62■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.61■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 AL121749.1-202ENST00000609313 2153 ntBASIC33.61■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 PROC-203ENST00000409048 1586 ntTSL 5 BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 LINC01003-201ENST00000564834 1764 ntBASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 AP002414.2-202ENST00000590929 1450 ntBASIC33.59■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 AC110285.7-201ENST00000624417 1536 ntBASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SENP3-EIF4A1A0A087X0R7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 BX255925.1-201ENST00000566954 1854 ntBASIC33.56■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC33.55■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 CR559946.2-201ENST00000623684 991 ntBASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC33.53■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC33.52■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC33.51■■■□□ 2.96
SENP3-EIF4A1A0A087X0R7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC33.51■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC33.49■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC33.48■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC33.48■■■□□ 2.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms