RNA–Protein interactions for RNA: YOR340C

RPA43, Transcript of RNA polymerase I subunit A43, yeastyeast

Gene RPA43, Length 981 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPA43YOR340C FAP1P53971 965 aa13.66□□□□□ -0.22
RPA43YOR340C PRY3P47033 881 aa12.99□□□□□ -0.33
RPA43YOR340C MTC1P47018 478 aaKnown RBP12.5□□□□□ -0.41
RPA43YOR340C YCK3P39962 524 aa12.43□□□□□ -0.42
RPA43YOR340C HAA1Q12753 694 aaKnown RBP11.99□□□□□ -0.49
RPA43YOR340C AAD16Q02895 342 aa11.93□□□□□ -0.5
RPA43YOR340C PRI1P10363 409 aa11.75□□□□□ -0.53
RPA43YOR340C DRS1P32892 752 aaKnown RBP11.42□□□□□ -0.58
RPA43YOR340C TSR3Q12094 313 aaKnown RBP11.02□□□□□ -0.65
RPA43YOR340C BUD31P25337 157 aaPredicted RBP10.85□□□□□ -0.67
RPA43YOR340C RPG1P38249 964 aaKnown RBP10.73□□□□□ -0.69
RPA43YOR340C YGL015CP33199 130 aa10.67□□□□□ -0.7
RPA43YOR340C ISW2Q08773 1120 aa10.66□□□□□ -0.7
RPA43YOR340C MRPL32P25348 183 aa10.47□□□□□ -0.73
RPA43YOR340C SIS1P25294 352 aaKnown RBP10.04□□□□□ -0.8
RPA43YOR340C DIP2Q12220 943 aaPredicted RBP9.98□□□□□ -0.81
RPA43YOR340C RSE1Q04693 1361 aaKnown RBP9.77□□□□□ -0.84
RPA43YOR340C CDC27P38042 758 aa9.71□□□□□ -0.86
RPA43YOR340C AVT3P36062 692 aa9.64□□□□□ -0.87
RPA43YOR340C MAP2P38174 421 aaKnown RBP9.62□□□□□ -0.87
RPA43YOR340C BFR2Q06631 534 aaKnown RBP9.6□□□□□ -0.87
RPA43YOR340C UBP10P53874 792 aaPredicted RBP9.56□□□□□ -0.88
RPA43YOR340C UBP9P39967 754 aa9.51□□□□□ -0.89
RPA43YOR340C RPL17AP05740 184 aaKnown RBP9.45□□□□□ -0.9
RPA43YOR340C REB1P21538 810 aa9.45□□□□□ -0.9
RPA43YOR340C RPL17BP46990 184 aaKnown RBP9.45□□□□□ -0.9
RPA43YOR340C TGL3P40308 642 aa9.2□□□□□ -0.94
RPA43YOR340C YKR023WP36119 530 aaKnown RBP9.12□□□□□ -0.95
RPA43YOR340C TIF4632P39936 914 aaKnown RBP9.12□□□□□ -0.95
RPA43YOR340C SPT21P35209 758 aa9.11□□□□□ -0.95
RPA43YOR340C DCD1P06773 312 aa8.98□□□□□ -0.97
RPA43YOR340C SCY1P53009 804 aa8.98□□□□□ -0.97
RPA43YOR340C SLX5P32828 619 aaKnown RBP8.94□□□□□ -0.98
RPA43YOR340C HOP09932 586 aa8.91□□□□□ -0.98
RPA43YOR340C TFA1P36100 482 aa8.89□□□□□ -0.99
RPA43YOR340C TFC8Q12308 588 aa8.89□□□□□ -0.99
RPA43YOR340C YBL029C-AQ3E756 94 aa8.83□□□□□ -1
RPA43YOR340C RIM101P33400 625 aa8.69□□□□□ -1.02
RPA43YOR340C AIR2Q12476 344 aaKnown RBP8.65□□□□□ -1.02
RPA43YOR340C VNX1P42839 908 aa8.62□□□□□ -1.03
RPA43YOR340C MST1P07236 462 aa8.61□□□□□ -1.03
RPA43YOR340C BCH2P36122 765 aa8.56□□□□□ -1.04
RPA43YOR340C YJL171CP46992 396 aa8.53□□□□□ -1.04
RPA43YOR340C FKH1P40466 484 aa8.5□□□□□ -1.05
RPA43YOR340C SPP1Q03012 353 aa8.47□□□□□ -1.05
RPA43YOR340C RGA2Q06407 1009 aa8.37□□□□□ -1.07
RPA43YOR340C YOR238WQ08634 303 aa8.37□□□□□ -1.07
RPA43YOR340C OXP1P28273 1286 aa8.35□□□□□ -1.07
RPA43YOR340C EPS1P40557 701 aa8.31□□□□□ -1.08
RPA43YOR340C WSC3Q12215 556 aa8.31□□□□□ -1.08
RPA43YOR340C BDF1P35817 686 aa8.3□□□□□ -1.08
RPA43YOR340C BMT6Q12291 365 aa8.26□□□□□ -1.09
RPA43YOR340C TIF11P38912 153 aaKnown RBP8.24□□□□□ -1.09
RPA43YOR340C NSR1P27476 414 aaKnown RBP RIP-Chip data8.2□□□□□ -1.1not detected
RPA43YOR340C PTP3P40048 928 aa8.18□□□□□ -1.1
RPA43YOR340C YIL055CP40523 627 aaKnown RBP8.18□□□□□ -1.1
RPA43YOR340C LDB19Q12502 818 aa8.15□□□□□ -1.1
RPA43YOR340C RSM7P47150 247 aa8.11□□□□□ -1.11
RPA43YOR340C YAH1Q12184 172 aaKnown RBP8.11□□□□□ -1.11
RPA43YOR340C BBC1P47068 1157 aa8.1□□□□□ -1.11
RPA43YOR340C IOC2Q12072 812 aa8.08□□□□□ -1.12
RPA43YOR340C AI2P03876 854 aa8.05□□□□□ -1.12
RPA43YOR340C YAP5P40574 245 aa8.04□□□□□ -1.12
RPA43YOR340C ULI1P43604 169 aa7.99□□□□□ -1.13
RPA43YOR340C YLR271WQ06152 274 aa7.99□□□□□ -1.13
RPA43YOR340C SSP1P38871 571 aa7.92□□□□□ -1.14
RPA43YOR340C PSD2P53037 1138 aaKnown RBP7.87□□□□□ -1.15
RPA43YOR340C RGA1P39083 1007 aa7.83□□□□□ -1.16
RPA43YOR340C GTT3P39996 337 aa7.83□□□□□ -1.16
RPA43YOR340C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.82□□□□□ -1.16not detected
RPA43YOR340C BCK2P33306 851 aa7.81□□□□□ -1.16
RPA43YOR340C RTG1P32607 177 aa7.78□□□□□ -1.16
RPA43YOR340C NCR1Q12200 1170 aa7.76□□□□□ -1.17
RPA43YOR340C MRM1P25270 412 aa7.72□□□□□ -1.17
RPA43YOR340C CST9Q06032 482 aa7.72□□□□□ -1.17
RPA43YOR340C MSB4Q12317 492 aa7.72□□□□□ -1.17
RPA43YOR340C MGA2P40578 1113 aa7.7□□□□□ -1.18
RPA43YOR340C PIB1Q06651 286 aa7.68□□□□□ -1.18
RPA43YOR340C EAP1P36041 632 aaKnown RBP7.66□□□□□ -1.18
RPA43YOR340C YMR1P47147 688 aaKnown RBP RIP-Chip data7.63□□□□□ -1.19not detected
RPA43YOR340C TRP5P00931 707 aaKnown RBP7.61□□□□□ -1.19
RPA43YOR340C VPS29P38759 282 aa7.61□□□□□ -1.19
RPA43YOR340C YOL036WQ08206 761 aa7.61□□□□□ -1.19
RPA43YOR340C SEC61P32915 480 aa7.58□□□□□ -1.2
RPA43YOR340C DBP1P24784 617 aaKnown RBP7.57□□□□□ -1.2
RPA43YOR340C RTG3P38165 486 aa7.57□□□□□ -1.2
RPA43YOR340C SAM3Q08986 587 aa7.57□□□□□ -1.2
RPA43YOR340C SET4P42948 560 aa7.56□□□□□ -1.2
RPA43YOR340C YNL035CP53962 389 aaKnown RBP7.56□□□□□ -1.2
RPA43YOR340C VMA1P17255 1071 aaKnown RBP7.55□□□□□ -1.2
RPA43YOR340C CHL1P22516 861 aaPredicted RBP7.54□□□□□ -1.2
RPA43YOR340C STS1P38637 319 aa7.53□□□□□ -1.2
RPA43YOR340C RCR1P38212 213 aa7.52□□□□□ -1.21
RPA43YOR340C SAP30P38429 201 aa7.52□□□□□ -1.21
RPA43YOR340C YFR006WP43590 535 aa7.49□□□□□ -1.21
RPA43YOR340C XDJ1P39102 459 aa7.48□□□□□ -1.21
RPA43YOR340C RQC2Q12532 1038 aaKnown RBP7.48□□□□□ -1.21
RPA43YOR340C ABP1P15891 592 aaKnown RBP7.46□□□□□ -1.22
RPA43YOR340C PRE3P38624 215 aa7.45□□□□□ -1.22
RPA43YOR340C SRC1Q03707 834 aa7.45□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms