RNA–Protein interactions for RNA: YLR417W

VPS36, Transcript of Component of the ESCRT-II complex, yeastyeast

Gene VPS36, Length 1,701 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS36YLR417W DRS1P32892 752 aaKnown RBP14.04□□□□□ -0.16
VPS36YLR417W MTC1P47018 478 aaKnown RBP13.48□□□□□ -0.25
VPS36YLR417W BFR2Q06631 534 aaKnown RBP12.37□□□□□ -0.43
VPS36YLR417W TFA1P36100 482 aa12.03□□□□□ -0.48
VPS36YLR417W DIP2Q12220 943 aaPredicted RBP11.8□□□□□ -0.52
VPS36YLR417W AVT3P36062 692 aa11.78□□□□□ -0.52
VPS36YLR417W RSE1Q04693 1361 aaKnown RBP10.99□□□□□ -0.65
VPS36YLR417W ISW2Q08773 1120 aa10.87□□□□□ -0.67
VPS36YLR417W RQC2Q12532 1038 aaKnown RBP10.79□□□□□ -0.68
VPS36YLR417W RPG1P38249 964 aaKnown RBP10.68□□□□□ -0.7
VPS36YLR417W PRI1P10363 409 aa10.54□□□□□ -0.72
VPS36YLR417W RPL17AP05740 184 aaKnown RBP10.53□□□□□ -0.72
VPS36YLR417W RPL17BP46990 184 aaKnown RBP10.53□□□□□ -0.72
VPS36YLR417W FAP1P53971 965 aa10.44□□□□□ -0.74
VPS36YLR417W REB1P21538 810 aa10.36□□□□□ -0.75
VPS36YLR417W AAD16Q02895 342 aa10.3□□□□□ -0.76
VPS36YLR417W SPT21P35209 758 aa10.19□□□□□ -0.78
VPS36YLR417W RIM101P33400 625 aa10.19□□□□□ -0.78
VPS36YLR417W PTP3P40048 928 aa10.11□□□□□ -0.79
VPS36YLR417W DMA1P38823 416 aa10.08□□□□□ -0.8
VPS36YLR417W TSR3Q12094 313 aaKnown RBP10.02□□□□□ -0.81
VPS36YLR417W SSP1P38871 571 aa9.96□□□□□ -0.82
VPS36YLR417W OXP1P28273 1286 aa9.87□□□□□ -0.83
VPS36YLR417W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.77□□□□□ -0.85not detected
VPS36YLR417W YAH1Q12184 172 aaKnown RBP9.76□□□□□ -0.85
VPS36YLR417W YKR023WP36119 530 aaKnown RBP9.75□□□□□ -0.85
VPS36YLR417W YIL055CP40523 627 aaKnown RBP9.75□□□□□ -0.85
VPS36YLR417W PRY3P47033 881 aa9.74□□□□□ -0.85
VPS36YLR417W YLR271WQ06152 274 aa9.69□□□□□ -0.86
VPS36YLR417W MRPL32P25348 183 aa9.65□□□□□ -0.86
VPS36YLR417W RSM7P47150 247 aa9.59□□□□□ -0.87
VPS36YLR417W MGA2P40578 1113 aa9.57□□□□□ -0.88
VPS36YLR417W TFC8Q12308 588 aa9.56□□□□□ -0.88
VPS36YLR417W HOP09932 586 aa9.53□□□□□ -0.88
VPS36YLR417W TAF7Q05021 590 aa9.51□□□□□ -0.89
VPS36YLR417W LEO1P38439 464 aa9.49□□□□□ -0.89
VPS36YLR417W SAS10Q12136 610 aaPredicted RBP9.42□□□□□ -0.9
VPS36YLR417W DCD1P06773 312 aa9.42□□□□□ -0.9
VPS36YLR417W CDC27P38042 758 aa9.4□□□□□ -0.9
VPS36YLR417W CST9Q06032 482 aa9.4□□□□□ -0.9
VPS36YLR417W PSD2P53037 1138 aaKnown RBP9.39□□□□□ -0.91
VPS36YLR417W AI2P03876 854 aa9.37□□□□□ -0.91
VPS36YLR417W LEU3P08638 886 aa9.31□□□□□ -0.92
VPS36YLR417W BBC1P47068 1157 aa9.31□□□□□ -0.92
VPS36YLR417W BCH2P36122 765 aa9.3□□□□□ -0.92
VPS36YLR417W HAA1Q12753 694 aaKnown RBP9.28□□□□□ -0.92
VPS36YLR417W YCK3P39962 524 aa9.25□□□□□ -0.93
VPS36YLR417W EPS1P40557 701 aa9.17□□□□□ -0.94
VPS36YLR417W RAM2P29703 316 aa9.15□□□□□ -0.94
VPS36YLR417W MRM1P25270 412 aa9.11□□□□□ -0.95
VPS36YLR417W BDF1P35817 686 aa9.1□□□□□ -0.95
VPS36YLR417W SET1P38827 1080 aaKnown RBP9.09□□□□□ -0.95
VPS36YLR417W RTG3P38165 486 aa9.04□□□□□ -0.96
VPS36YLR417W CKB1P43639 278 aa9.03□□□□□ -0.96
VPS36YLR417W SCY1P53009 804 aa9.03□□□□□ -0.96
VPS36YLR417W YPR148CQ06523 435 aa9.03□□□□□ -0.96
VPS36YLR417W RCR1P38212 213 aa9.02□□□□□ -0.96
VPS36YLR417W RPN1P38764 993 aaKnown RBP9.02□□□□□ -0.96
VPS36YLR417W IFH1P39520 1085 aa9.02□□□□□ -0.96
VPS36YLR417W UBP10P53874 792 aaPredicted RBP8.99□□□□□ -0.97
VPS36YLR417W MAK11P20484 414 aaKnown RBP8.98□□□□□ -0.97
VPS36YLR417W VPS70P47161 811 aa8.98□□□□□ -0.97
VPS36YLR417W SPB4P25808 606 aaPredicted RBP8.97□□□□□ -0.97
VPS36YLR417W MAP2P38174 421 aaKnown RBP8.94□□□□□ -0.98
VPS36YLR417W VPS29P38759 282 aa8.89□□□□□ -0.99
VPS36YLR417W YGL015CP33199 130 aa8.86□□□□□ -0.99
VPS36YLR417W NOP53Q12080 455 aaKnown RBP8.85□□□□□ -0.99
VPS36YLR417W SLX5P32828 619 aaKnown RBP8.85□□□□□ -0.99
VPS36YLR417W COQ8P27697 501 aa8.84□□□□□ -0.99
VPS36YLR417W DSF2P38213 736 aa8.83□□□□□ -1
VPS36YLR417W DMA2P53924 522 aa8.81□□□□□ -1
VPS36YLR417W YMR1P47147 688 aaKnown RBP RIP-Chip data8.8□□□□□ -1not detected
VPS36YLR417W PBS2P08018 668 aa8.8□□□□□ -1
VPS36YLR417W MIF2P35201 549 aa8.74□□□□□ -1.01
VPS36YLR417W STS1P38637 319 aa8.74□□□□□ -1.01
VPS36YLR417W YNR021WP53723 404 aaKnown RBP8.72□□□□□ -1.01
VPS36YLR417W DBP1P24784 617 aaKnown RBP8.71□□□□□ -1.01
VPS36YLR417W REF2P42073 533 aaPredicted RBP8.71□□□□□ -1.01
VPS36YLR417W EDS1P38073 919 aa8.71□□□□□ -1.02
VPS36YLR417W MAM3Q12296 706 aa8.68□□□□□ -1.02
VPS36YLR417W YFR006WP43590 535 aa8.68□□□□□ -1.02
VPS36YLR417W YOR238WQ08634 303 aa8.67□□□□□ -1.02
VPS36YLR417W KIN1P13185 1064 aa8.65□□□□□ -1.03
VPS36YLR417W MAK21Q12176 1025 aaKnown RBP8.64□□□□□ -1.03
VPS36YLR417W NSR1P27476 414 aaKnown RBP RIP-Chip data8.63□□□□□ -1.03not detected
VPS36YLR417W PTC3P34221 468 aaKnown RBP8.63□□□□□ -1.03
VPS36YLR417W AIM7Q12156 149 aa8.63□□□□□ -1.03
VPS36YLR417W TIF4632P39936 914 aaKnown RBP8.62□□□□□ -1.03
VPS36YLR417W IES2P40154 320 aa8.62□□□□□ -1.03
VPS36YLR417W COX6P00427 148 aa8.6□□□□□ -1.03
VPS36YLR417W NUP42P49686 430 aaKnown RBP8.6□□□□□ -1.03
VPS36YLR417W GLC3P32775 704 aa8.59□□□□□ -1.03
VPS36YLR417W RLF2Q12495 606 aa8.59□□□□□ -1.03
VPS36YLR417W DIT2P21595 489 aa8.58□□□□□ -1.04
VPS36YLR417W YAP5P40574 245 aa8.57□□□□□ -1.04
VPS36YLR417W TGL3P40308 642 aa8.56□□□□□ -1.04
VPS36YLR417W HGH1P48362 394 aaKnown RBP8.54□□□□□ -1.04
VPS36YLR417W VMA1P17255 1071 aaKnown RBP8.52□□□□□ -1.05
VPS36YLR417W PIB1Q06651 286 aa8.51□□□□□ -1.05
VPS36YLR417W ABP1P15891 592 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms