RNA–Protein interactions for RNA: YDR499W

LCD1, Transcript of Essential protein required for the DNA integrity checkpoint pathways, yeastyeast

Gene LCD1, Length 2,244 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCD1YDR499W MTC1P47018 478 aaKnown RBP8.48□□□□□ -1.05
LCD1YDR499W DRS1P32892 752 aaKnown RBP7.93□□□□□ -1.14
LCD1YDR499W FAP1P53971 965 aa7.71□□□□□ -1.17
LCD1YDR499W PRY3P47033 881 aa7.24□□□□□ -1.25
LCD1YDR499W PRI1P10363 409 aa7.15□□□□□ -1.26
LCD1YDR499W AAD16Q02895 342 aa7.12□□□□□ -1.27
LCD1YDR499W ISW2Q08773 1120 aa7.03□□□□□ -1.28
LCD1YDR499W RPG1P38249 964 aaKnown RBP6.98□□□□□ -1.29
LCD1YDR499W DIP2Q12220 943 aaPredicted RBP6.95□□□□□ -1.3
LCD1YDR499W TSR3Q12094 313 aaKnown RBP6.8□□□□□ -1.32
LCD1YDR499W YCK3P39962 524 aa6.8□□□□□ -1.32
LCD1YDR499W HAA1Q12753 694 aaKnown RBP6.74□□□□□ -1.33
LCD1YDR499W RSE1Q04693 1361 aaKnown RBP6.71□□□□□ -1.34
LCD1YDR499W AVT3P36062 692 aa6.66□□□□□ -1.34
LCD1YDR499W BFR2Q06631 534 aaKnown RBP6.58□□□□□ -1.36
LCD1YDR499W RPL17AP05740 184 aaKnown RBP6.52□□□□□ -1.37
LCD1YDR499W RPL17BP46990 184 aaKnown RBP6.52□□□□□ -1.37
LCD1YDR499W MRPL32P25348 183 aa6.51□□□□□ -1.37
LCD1YDR499W REB1P21538 810 aa6.5□□□□□ -1.37
LCD1YDR499W YGL015CP33199 130 aa6.23□□□□□ -1.41
LCD1YDR499W SPT21P35209 758 aa6.2□□□□□ -1.42
LCD1YDR499W CDC27P38042 758 aa6.19□□□□□ -1.42
LCD1YDR499W YKR023WP36119 530 aaKnown RBP6.15□□□□□ -1.43
LCD1YDR499W HOP09932 586 aa6.06□□□□□ -1.44
LCD1YDR499W DCD1P06773 312 aa6.05□□□□□ -1.44
LCD1YDR499W TFC8Q12308 588 aa6.02□□□□□ -1.45
LCD1YDR499W MAP2P38174 421 aaKnown RBP6□□□□□ -1.45
LCD1YDR499W RIM101P33400 625 aa5.97□□□□□ -1.45
LCD1YDR499W UBP10P53874 792 aaPredicted RBP5.97□□□□□ -1.45
LCD1YDR499W SCY1P53009 804 aa5.89□□□□□ -1.47
LCD1YDR499W BCH2P36122 765 aa5.83□□□□□ -1.48
LCD1YDR499W OXP1P28273 1286 aa5.79□□□□□ -1.48
LCD1YDR499W SLX5P32828 619 aaKnown RBP5.79□□□□□ -1.48
LCD1YDR499W TIF4632P39936 914 aaKnown RBP5.74□□□□□ -1.49
LCD1YDR499W PTP3P40048 928 aa5.74□□□□□ -1.49
LCD1YDR499W YIL055CP40523 627 aaKnown RBP5.72□□□□□ -1.49
LCD1YDR499W TFA1P36100 482 aa5.71□□□□□ -1.49
LCD1YDR499W BUD31P25337 157 aaPredicted RBP5.71□□□□□ -1.5
LCD1YDR499W TGL3P40308 642 aa5.7□□□□□ -1.5
LCD1YDR499W EPS1P40557 701 aa5.69□□□□□ -1.5
LCD1YDR499W YAH1Q12184 172 aaKnown RBP5.67□□□□□ -1.5
LCD1YDR499W BDF1P35817 686 aa5.66□□□□□ -1.5
LCD1YDR499W RSM7P47150 247 aa5.62□□□□□ -1.51
LCD1YDR499W AI2P03876 854 aa5.58□□□□□ -1.52
LCD1YDR499W BBC1P47068 1157 aa5.58□□□□□ -1.52
LCD1YDR499W UBP9P39967 754 aa5.55□□□□□ -1.52
LCD1YDR499W YLR271WQ06152 274 aa5.52□□□□□ -1.53
LCD1YDR499W SIS1P25294 352 aaKnown RBP5.47□□□□□ -1.53
LCD1YDR499W YOR238WQ08634 303 aa5.46□□□□□ -1.54
LCD1YDR499W SSP1P38871 571 aa5.44□□□□□ -1.54
LCD1YDR499W MST1P07236 462 aa5.44□□□□□ -1.54
LCD1YDR499W PSD2P53037 1138 aaKnown RBP5.43□□□□□ -1.54
LCD1YDR499W YAP5P40574 245 aa5.42□□□□□ -1.54
LCD1YDR499W YBL029C-AQ3E756 94 aa5.42□□□□□ -1.54
LCD1YDR499W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.42□□□□□ -1.54not detected
LCD1YDR499W NSR1P27476 414 aaKnown RBP RIP-Chip data5.41□□□□□ -1.54not detected
LCD1YDR499W MRM1P25270 412 aa5.39□□□□□ -1.55
LCD1YDR499W WSC3Q12215 556 aa5.36□□□□□ -1.55
LCD1YDR499W PIB1Q06651 286 aa5.35□□□□□ -1.55
LCD1YDR499W CST9Q06032 482 aa5.35□□□□□ -1.55
LCD1YDR499W VNX1P42839 908 aa5.33□□□□□ -1.56
LCD1YDR499W GTT3P39996 337 aa5.33□□□□□ -1.56
LCD1YDR499W MGA2P40578 1113 aa5.31□□□□□ -1.56
LCD1YDR499W SPP1Q03012 353 aa5.31□□□□□ -1.56
LCD1YDR499W RTG3P38165 486 aa5.25□□□□□ -1.57
LCD1YDR499W VPS29P38759 282 aa5.24□□□□□ -1.57
LCD1YDR499W TIF11P38912 153 aaKnown RBP5.24□□□□□ -1.57
LCD1YDR499W YFR006WP43590 535 aa5.24□□□□□ -1.57
LCD1YDR499W YMR1P47147 688 aaKnown RBP RIP-Chip data5.23□□□□□ -1.57not detected
LCD1YDR499W DBP1P24784 617 aaKnown RBP5.23□□□□□ -1.57
LCD1YDR499W RCR1P38212 213 aa5.23□□□□□ -1.57
LCD1YDR499W STS1P38637 319 aa5.2□□□□□ -1.58
LCD1YDR499W ULI1P43604 169 aa5.19□□□□□ -1.58
LCD1YDR499W SET4P42948 560 aa5.17□□□□□ -1.58
LCD1YDR499W LDB19Q12502 818 aa5.17□□□□□ -1.58
LCD1YDR499W YOL036WQ08206 761 aa5.17□□□□□ -1.58
LCD1YDR499W VMA1P17255 1071 aaKnown RBP5.16□□□□□ -1.58
LCD1YDR499W FKH1P40466 484 aa5.16□□□□□ -1.58
LCD1YDR499W AIR2Q12476 344 aaKnown RBP5.16□□□□□ -1.58
LCD1YDR499W IOC2Q12072 812 aa5.15□□□□□ -1.59
LCD1YDR499W MSB4Q12317 492 aa5.15□□□□□ -1.59
LCD1YDR499W YJL171CP46992 396 aa5.13□□□□□ -1.59
LCD1YDR499W EAP1P36041 632 aaKnown RBP5.12□□□□□ -1.59
LCD1YDR499W TRP5P00931 707 aaKnown RBP5.11□□□□□ -1.59
LCD1YDR499W SAM3Q08986 587 aa5.1□□□□□ -1.59
LCD1YDR499W RTG1P32607 177 aa5.08□□□□□ -1.6
LCD1YDR499W GYP5Q12344 894 aa5.07□□□□□ -1.6
LCD1YDR499W BMT6Q12291 365 aa5.06□□□□□ -1.6
LCD1YDR499W RAM2P29703 316 aa5.04□□□□□ -1.6
LCD1YDR499W YNL035CP53962 389 aaKnown RBP5.04□□□□□ -1.6
LCD1YDR499W DCW1P36091 449 aa5.04□□□□□ -1.6
LCD1YDR499W NCR1Q12200 1170 aa5.04□□□□□ -1.6
LCD1YDR499W MIF2P35201 549 aa5.03□□□□□ -1.6
LCD1YDR499W HTA1P04911 132 aaKnown RBP5.01□□□□□ -1.61
LCD1YDR499W HTA2P04912 132 aa5.01□□□□□ -1.61
LCD1YDR499W MAK11P20484 414 aaKnown RBP5.01□□□□□ -1.61
LCD1YDR499W SEC61P32915 480 aa5.01□□□□□ -1.61
LCD1YDR499W ABP1P15891 592 aaKnown RBP5□□□□□ -1.61
LCD1YDR499W EDS1P38073 919 aa4.99□□□□□ -1.61
LCD1YDR499W TFG1P41895 735 aaPredicted RBP4.99□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms