RNA–Protein interactions for RNA: YDR192C

NUP42, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP42, Length 1,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP42YDR192C DRS1P32892 752 aaKnown RBP13.44□□□□□ -0.26
NUP42YDR192C MTC1P47018 478 aaKnown RBP13.17□□□□□ -0.3
NUP42YDR192C BFR2Q06631 534 aaKnown RBP11.75□□□□□ -0.53
NUP42YDR192C DIP2Q12220 943 aaPredicted RBP11.37□□□□□ -0.59
NUP42YDR192C AVT3P36062 692 aa11.26□□□□□ -0.61
NUP42YDR192C TFA1P36100 482 aa11.22□□□□□ -0.61
NUP42YDR192C ISW2Q08773 1120 aa10.73□□□□□ -0.69
NUP42YDR192C RSE1Q04693 1361 aaKnown RBP10.7□□□□□ -0.7
NUP42YDR192C FAP1P53971 965 aa10.53□□□□□ -0.72
NUP42YDR192C RPG1P38249 964 aaKnown RBP10.49□□□□□ -0.73
NUP42YDR192C PRI1P10363 409 aa10.43□□□□□ -0.74
NUP42YDR192C RPL17AP05740 184 aaKnown RBP10.24□□□□□ -0.77
NUP42YDR192C RPL17BP46990 184 aaKnown RBP10.24□□□□□ -0.77
NUP42YDR192C AAD16Q02895 342 aa10.24□□□□□ -0.77
NUP42YDR192C REB1P21538 810 aa10.14□□□□□ -0.79
NUP42YDR192C RQC2Q12532 1038 aaKnown RBP9.96□□□□□ -0.82
NUP42YDR192C PRY3P47033 881 aa9.88□□□□□ -0.83
NUP42YDR192C SPT21P35209 758 aa9.87□□□□□ -0.83
NUP42YDR192C TSR3Q12094 313 aaKnown RBP9.87□□□□□ -0.83
NUP42YDR192C RIM101P33400 625 aa9.8□□□□□ -0.84
NUP42YDR192C MRPL32P25348 183 aa9.59□□□□□ -0.87
NUP42YDR192C PTP3P40048 928 aa9.58□□□□□ -0.88
NUP42YDR192C SSP1P38871 571 aa9.5□□□□□ -0.89
NUP42YDR192C YCK3P39962 524 aa9.5□□□□□ -0.89
NUP42YDR192C YKR023WP36119 530 aaKnown RBP9.47□□□□□ -0.89
NUP42YDR192C OXP1P28273 1286 aa9.45□□□□□ -0.9
NUP42YDR192C YIL055CP40523 627 aaKnown RBP9.43□□□□□ -0.9
NUP42YDR192C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.41□□□□□ -0.9not detected
NUP42YDR192C HAA1Q12753 694 aaKnown RBP9.37□□□□□ -0.91
NUP42YDR192C YAH1Q12184 172 aaKnown RBP9.36□□□□□ -0.91
NUP42YDR192C TFC8Q12308 588 aa9.32□□□□□ -0.92
NUP42YDR192C DMA1P38823 416 aa9.28□□□□□ -0.92
NUP42YDR192C HOP09932 586 aa9.26□□□□□ -0.93
NUP42YDR192C RSM7P47150 247 aa9.25□□□□□ -0.93
NUP42YDR192C YLR271WQ06152 274 aa9.25□□□□□ -0.93
NUP42YDR192C CDC27P38042 758 aa9.2□□□□□ -0.94
NUP42YDR192C MGA2P40578 1113 aa9.16□□□□□ -0.94
NUP42YDR192C DCD1P06773 312 aa9.14□□□□□ -0.95
NUP42YDR192C BBC1P47068 1157 aa9.07□□□□□ -0.96
NUP42YDR192C AI2P03876 854 aa9.05□□□□□ -0.96
NUP42YDR192C BCH2P36122 765 aa9.03□□□□□ -0.96
NUP42YDR192C PSD2P53037 1138 aaKnown RBP9.02□□□□□ -0.97
NUP42YDR192C CST9Q06032 482 aa8.96□□□□□ -0.98
NUP42YDR192C UBP10P53874 792 aaPredicted RBP8.94□□□□□ -0.98
NUP42YDR192C EPS1P40557 701 aa8.92□□□□□ -0.98
NUP42YDR192C YGL015CP33199 130 aa8.88□□□□□ -0.99
NUP42YDR192C SCY1P53009 804 aa8.86□□□□□ -0.99
NUP42YDR192C BDF1P35817 686 aa8.84□□□□□ -0.99
NUP42YDR192C MAP2P38174 421 aaKnown RBP8.81□□□□□ -1
NUP42YDR192C MRM1P25270 412 aa8.78□□□□□ -1
NUP42YDR192C SAS10Q12136 610 aaPredicted RBP8.77□□□□□ -1.01
NUP42YDR192C SLX5P32828 619 aaKnown RBP8.74□□□□□ -1.01
NUP42YDR192C RTG3P38165 486 aa8.73□□□□□ -1.01
NUP42YDR192C RAM2P29703 316 aa8.69□□□□□ -1.02
NUP42YDR192C LEO1P38439 464 aa8.63□□□□□ -1.03
NUP42YDR192C IFH1P39520 1085 aa8.63□□□□□ -1.03
NUP42YDR192C LEU3P08638 886 aa8.62□□□□□ -1.03
NUP42YDR192C MAK11P20484 414 aaKnown RBP8.62□□□□□ -1.03
NUP42YDR192C SET1P38827 1080 aaKnown RBP8.62□□□□□ -1.03
NUP42YDR192C RCR1P38212 213 aa8.61□□□□□ -1.03
NUP42YDR192C TIF4632P39936 914 aaKnown RBP8.6□□□□□ -1.03
NUP42YDR192C VPS29P38759 282 aa8.54□□□□□ -1.04
NUP42YDR192C CKB1P43639 278 aa8.54□□□□□ -1.04
NUP42YDR192C YMR1P47147 688 aaKnown RBP RIP-Chip data8.54□□□□□ -1.04not detected
NUP42YDR192C YPR148CQ06523 435 aa8.54□□□□□ -1.04
NUP42YDR192C NSR1P27476 414 aaKnown RBP RIP-Chip data8.51□□□□□ -1.05not detected
NUP42YDR192C NOP53Q12080 455 aaKnown RBP8.51□□□□□ -1.05
NUP42YDR192C TGL3P40308 642 aa8.48□□□□□ -1.05
NUP42YDR192C COQ8P27697 501 aa8.46□□□□□ -1.06
NUP42YDR192C VPS70P47161 811 aa8.46□□□□□ -1.06
NUP42YDR192C YOR238WQ08634 303 aa8.45□□□□□ -1.06
NUP42YDR192C YAP5P40574 245 aa8.44□□□□□ -1.06
NUP42YDR192C DBP1P24784 617 aaKnown RBP8.43□□□□□ -1.06
NUP42YDR192C TAF7Q05021 590 aa8.43□□□□□ -1.06
NUP42YDR192C STS1P38637 319 aa8.42□□□□□ -1.06
NUP42YDR192C INO80P53115 1489 aa8.41□□□□□ -1.06
NUP42YDR192C SPB4P25808 606 aaPredicted RBP8.41□□□□□ -1.06
NUP42YDR192C MIF2P35201 549 aa8.4□□□□□ -1.06
NUP42YDR192C MON2P48563 1636 aaPredicted RBP8.39□□□□□ -1.07
NUP42YDR192C RPN1P38764 993 aaKnown RBP8.37□□□□□ -1.07
NUP42YDR192C YFR006WP43590 535 aa8.36□□□□□ -1.07
NUP42YDR192C EDS1P38073 919 aa8.32□□□□□ -1.08
NUP42YDR192C DSF2P38213 736 aa8.31□□□□□ -1.08
NUP42YDR192C PBS2P08018 668 aa8.3□□□□□ -1.08
NUP42YDR192C PTC3P34221 468 aaKnown RBP8.3□□□□□ -1.08
NUP42YDR192C VMA1P17255 1071 aaKnown RBP8.28□□□□□ -1.08
NUP42YDR192C REF2P42073 533 aaPredicted RBP8.28□□□□□ -1.08
NUP42YDR192C MAK21Q12176 1025 aaKnown RBP8.26□□□□□ -1.09
NUP42YDR192C PIB1Q06651 286 aa8.25□□□□□ -1.09
NUP42YDR192C MST1P07236 462 aa8.24□□□□□ -1.09
NUP42YDR192C GTT3P39996 337 aa8.22□□□□□ -1.09
NUP42YDR192C ATH1P48016 1211 aa8.22□□□□□ -1.09
NUP42YDR192C GRE2Q12068 342 aaKnown RBP8.22□□□□□ -1.09
NUP42YDR192C MAM3Q12296 706 aa8.22□□□□□ -1.09
NUP42YDR192C SAM3Q08986 587 aa8.21□□□□□ -1.1
NUP42YDR192C GUT1P32190 709 aa8.2□□□□□ -1.1
NUP42YDR192C ABP1P15891 592 aaKnown RBP8.19□□□□□ -1.1
NUP42YDR192C YNR021WP53723 404 aaKnown RBP8.19□□□□□ -1.1
NUP42YDR192C COX6P00427 148 aa8.15□□□□□ -1.1
NUP42YDR192C GYP5Q12344 894 aa8.15□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms