RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	DRS1	P32892	752 aa	Known RBP	16.14	■□□□□ 0.17
TRP1	YDR007W	MTC1	P47018	478 aa	Known RBP	15.35	■□□□□ 0.05
TRP1	YDR007W	BFR2	Q06631	534 aa	Known RBP	14.27	□□□□□ -0.13
TRP1	YDR007W	TFA1	P36100	482 aa		13.88	□□□□□ -0.19
TRP1	YDR007W	DIP2	Q12220	943 aa	Predicted RBP	13.52	□□□□□ -0.25
TRP1	YDR007W	AVT3	P36062	692 aa		13.49	□□□□□ -0.25
TRP1	YDR007W	FAP1	P53971	965 aa		12.86	□□□□□ -0.35
TRP1	YDR007W	RQC2	Q12532	1038 aa	Known RBP	12.57	□□□□□ -0.4
TRP1	YDR007W	RSE1	Q04693	1361 aa	Known RBP	12.56	□□□□□ -0.4
TRP1	YDR007W	ISW2	Q08773	1120 aa		12.37	□□□□□ -0.43
TRP1	YDR007W	RPG1	P38249	964 aa	Known RBP	12.18	□□□□□ -0.46
TRP1	YDR007W	PRI1	P10363	409 aa		12.14	□□□□□ -0.47
TRP1	YDR007W	PRY3	P47033	881 aa		12.06	□□□□□ -0.48
TRP1	YDR007W	RPL17A	P05740	184 aa	Known RBP	12.05	□□□□□ -0.48
TRP1	YDR007W	RPL17B	P46990	184 aa	Known RBP	12.05	□□□□□ -0.48
TRP1	YDR007W	AAD16	Q02895	342 aa		12.04	□□□□□ -0.48
TRP1	YDR007W	REB1	P21538	810 aa		11.85	□□□□□ -0.51
TRP1	YDR007W	DMA1	P38823	416 aa		11.72	□□□□□ -0.53
TRP1	YDR007W	PTP3	P40048	928 aa		11.69	□□□□□ -0.54
TRP1	YDR007W	RIM101	P33400	625 aa		11.63	□□□□□ -0.55
TRP1	YDR007W	SPT21	P35209	758 aa		11.61	□□□□□ -0.55
TRP1	YDR007W	TSR3	Q12094	313 aa	Known RBP	11.51	□□□□□ -0.57
TRP1	YDR007W	SSP1	P38871	571 aa		11.44	□□□□□ -0.58
TRP1	YDR007W	YCK3	P39962	524 aa		11.4	□□□□□ -0.58
TRP1	YDR007W	HAA1	Q12753	694 aa	Known RBP	11.32	□□□□□ -0.6
TRP1	YDR007W	OXP1	P28273	1286 aa		11.29	□□□□□ -0.6
TRP1	YDR007W	YAH1	Q12184	172 aa	Known RBP	11.25	□□□□□ -0.61
TRP1	YDR007W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.22	□□□□□ -0.61	not detected
TRP1	YDR007W	YIL055C	P40523	627 aa	Known RBP	11.18	□□□□□ -0.62
TRP1	YDR007W	TAF7	Q05021	590 aa		11.15	□□□□□ -0.62
TRP1	YDR007W	YKR023W	P36119	530 aa	Known RBP	11.11	□□□□□ -0.63
TRP1	YDR007W	YLR271W	Q06152	274 aa		11.1	□□□□□ -0.63
TRP1	YDR007W	MRPL32	P25348	183 aa		11.04	□□□□□ -0.64
TRP1	YDR007W	LEO1	P38439	464 aa		11.03	□□□□□ -0.64
TRP1	YDR007W	RSM7	P47150	247 aa		10.97	□□□□□ -0.65
TRP1	YDR007W	MGA2	P40578	1113 aa		10.96	□□□□□ -0.65
TRP1	YDR007W	HO	P09932	586 aa		10.9	□□□□□ -0.66
TRP1	YDR007W	TFC8	Q12308	588 aa		10.88	□□□□□ -0.67
TRP1	YDR007W	SAS10	Q12136	610 aa	Predicted RBP	10.84	□□□□□ -0.67
TRP1	YDR007W	CST9	Q06032	482 aa		10.79	□□□□□ -0.68
TRP1	YDR007W	DCD1	P06773	312 aa		10.78	□□□□□ -0.68
TRP1	YDR007W	LEU3	P08638	886 aa		10.74	□□□□□ -0.69
TRP1	YDR007W	AI2	P03876	854 aa		10.73	□□□□□ -0.69
TRP1	YDR007W	PSD2	P53037	1138 aa	Known RBP	10.72	□□□□□ -0.69
TRP1	YDR007W	CDC27	P38042	758 aa		10.69	□□□□□ -0.7
TRP1	YDR007W	BBC1	P47068	1157 aa		10.64	□□□□□ -0.71
TRP1	YDR007W	BCH2	P36122	765 aa		10.6	□□□□□ -0.71
TRP1	YDR007W	YGL015C	P33199	130 aa		10.52	□□□□□ -0.73
TRP1	YDR007W	RAM2	P29703	316 aa		10.49	□□□□□ -0.73
TRP1	YDR007W	EPS1	P40557	701 aa		10.47	□□□□□ -0.73
TRP1	YDR007W	SET1	P38827	1080 aa	Known RBP	10.45	□□□□□ -0.74
TRP1	YDR007W	MRM1	P25270	412 aa		10.44	□□□□□ -0.74
TRP1	YDR007W	RPN1	P38764	993 aa	Known RBP	10.44	□□□□□ -0.74
TRP1	YDR007W	SPB4	P25808	606 aa	Predicted RBP	10.4	□□□□□ -0.74
TRP1	YDR007W	CKB1	P43639	278 aa		10.38	□□□□□ -0.75
TRP1	YDR007W	BDF1	P35817	686 aa		10.37	□□□□□ -0.75
TRP1	YDR007W	RTG3	P38165	486 aa		10.36	□□□□□ -0.75
TRP1	YDR007W	VPS70	P47161	811 aa		10.36	□□□□□ -0.75
TRP1	YDR007W	RCR1	P38212	213 aa		10.35	□□□□□ -0.75
TRP1	YDR007W	IFH1	P39520	1085 aa		10.35	□□□□□ -0.75
TRP1	YDR007W	YPR148C	Q06523	435 aa		10.35	□□□□□ -0.75
TRP1	YDR007W	SCY1	P53009	804 aa		10.3	□□□□□ -0.76
TRP1	YDR007W	MAK11	P20484	414 aa	Known RBP	10.28	□□□□□ -0.76
TRP1	YDR007W	DMA2	P53924	522 aa		10.27	□□□□□ -0.77
TRP1	YDR007W	MAP2	P38174	421 aa	Known RBP	10.18	□□□□□ -0.78
TRP1	YDR007W	UBP10	P53874	792 aa	Predicted RBP	10.18	□□□□□ -0.78
TRP1	YDR007W	VPS29	P38759	282 aa		10.15	□□□□□ -0.78
TRP1	YDR007W	PBS2	P08018	668 aa		10.14	□□□□□ -0.79
TRP1	YDR007W	COQ8	P27697	501 aa		10.14	□□□□□ -0.79
TRP1	YDR007W	DSF2	P38213	736 aa		10.14	□□□□□ -0.79
TRP1	YDR007W	NOP53	Q12080	455 aa	Known RBP	10.08	□□□□□ -0.8
TRP1	YDR007W	SLX5	P32828	619 aa	Known RBP	10.06	□□□□□ -0.8
TRP1	YDR007W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	10.05	□□□□□ -0.8	not detected
TRP1	YDR007W	MIF2	P35201	549 aa		10.04	□□□□□ -0.8
TRP1	YDR007W	YNR021W	P53723	404 aa	Known RBP	10.04	□□□□□ -0.8
TRP1	YDR007W	KIN1	P13185	1064 aa		10	□□□□□ -0.81
TRP1	YDR007W	REF2	P42073	533 aa	Predicted RBP	10	□□□□□ -0.81
TRP1	YDR007W	MAM3	Q12296	706 aa		10	□□□□□ -0.81
TRP1	YDR007W	STS1	P38637	319 aa		9.98	□□□□□ -0.81
TRP1	YDR007W	RLF2	Q12495	606 aa		9.98	□□□□□ -0.81
TRP1	YDR007W	DBP1	P24784	617 aa	Known RBP	9.97	□□□□□ -0.81
TRP1	YDR007W	EDS1	P38073	919 aa		9.96	□□□□□ -0.82
TRP1	YDR007W	YFR006W	P43590	535 aa		9.96	□□□□□ -0.82
TRP1	YDR007W	IES2	P40154	320 aa		9.94	□□□□□ -0.82
TRP1	YDR007W	GLC3	P32775	704 aa		9.93	□□□□□ -0.82
TRP1	YDR007W	AIM7	Q12156	149 aa		9.92	□□□□□ -0.82
TRP1	YDR007W	YOR238W	Q08634	303 aa		9.9	□□□□□ -0.82
TRP1	YDR007W	DIT2	P21595	489 aa		9.89	□□□□□ -0.83
TRP1	YDR007W	HGH1	P48362	394 aa	Known RBP	9.89	□□□□□ -0.83
TRP1	YDR007W	MAK21	Q12176	1025 aa	Known RBP	9.89	□□□□□ -0.83
TRP1	YDR007W	ABP1	P15891	592 aa	Known RBP	9.88	□□□□□ -0.83
TRP1	YDR007W	NUP42	P49686	430 aa	Known RBP	9.88	□□□□□ -0.83
TRP1	YDR007W	PTC3	P34221	468 aa	Known RBP	9.87	□□□□□ -0.83
TRP1	YDR007W	COX6	P00427	148 aa		9.86	□□□□□ -0.83
TRP1	YDR007W	ATF2	P53296	535 aa		9.82	□□□□□ -0.84
TRP1	YDR007W	TIF4632	P39936	914 aa	Known RBP	9.78	□□□□□ -0.84
TRP1	YDR007W	GUA1	P38625	525 aa	Known RBP	9.77	□□□□□ -0.85
TRP1	YDR007W	PIB1	Q06651	286 aa		9.76	□□□□□ -0.85
TRP1	YDR007W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	9.75	□□□□□ -0.85	RIP-Chip
TRP1	YDR007W	YAP5	P40574	245 aa		9.75	□□□□□ -0.85

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms