RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeastyeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ASM4YDL088C MTC1P47018 478 aaKnown RBP13.13□□□□□ -0.31
ASM4YDL088C DRS1P32892 752 aaKnown RBP12.49□□□□□ -0.41
ASM4YDL088C FAP1P53971 965 aa11.75□□□□□ -0.53
ASM4YDL088C PRY3P47033 881 aa11□□□□□ -0.65
ASM4YDL088C PRI1P10363 409 aa10.97□□□□□ -0.65
ASM4YDL088C AAD16Q02895 342 aa10.91□□□□□ -0.66
ASM4YDL088C ISW2Q08773 1120 aa10.9□□□□□ -0.66
ASM4YDL088C DIP2Q12220 943 aaPredicted RBP10.87□□□□□ -0.67
ASM4YDL088C RPG1P38249 964 aaKnown RBP10.77□□□□□ -0.68
ASM4YDL088C RSE1Q04693 1361 aaKnown RBP10.48□□□□□ -0.73
ASM4YDL088C BFR2Q06631 534 aaKnown RBP10.48□□□□□ -0.73
ASM4YDL088C AVT3P36062 692 aa10.46□□□□□ -0.74
ASM4YDL088C TSR3Q12094 313 aaKnown RBP10.43□□□□□ -0.74
ASM4YDL088C HAA1Q12753 694 aaKnown RBP10.3□□□□□ -0.76
ASM4YDL088C YCK3P39962 524 aa10.23□□□□□ -0.77
ASM4YDL088C RPL17AP05740 184 aaKnown RBP10.14□□□□□ -0.79
ASM4YDL088C RPL17BP46990 184 aaKnown RBP10.14□□□□□ -0.79
ASM4YDL088C REB1P21538 810 aa10.12□□□□□ -0.79
ASM4YDL088C MRPL32P25348 183 aa10.04□□□□□ -0.8
ASM4YDL088C SPT21P35209 758 aa9.62□□□□□ -0.87
ASM4YDL088C YGL015CP33199 130 aa9.56□□□□□ -0.88
ASM4YDL088C YKR023WP36119 530 aaKnown RBP9.5□□□□□ -0.89
ASM4YDL088C CDC27P38042 758 aa9.5□□□□□ -0.89
ASM4YDL088C HOP09932 586 aa9.36□□□□□ -0.91
ASM4YDL088C RIM101P33400 625 aa9.34□□□□□ -0.91
ASM4YDL088C TFC8Q12308 588 aa9.32□□□□□ -0.92
ASM4YDL088C DCD1P06773 312 aa9.31□□□□□ -0.92
ASM4YDL088C TFA1P36100 482 aa9.26□□□□□ -0.93
ASM4YDL088C UBP10P53874 792 aaPredicted RBP9.21□□□□□ -0.93
ASM4YDL088C MAP2P38174 421 aaKnown RBP9.2□□□□□ -0.94
ASM4YDL088C SCY1P53009 804 aa9.08□□□□□ -0.96
ASM4YDL088C OXP1P28273 1286 aa9.03□□□□□ -0.96
ASM4YDL088C BCH2P36122 765 aa9.03□□□□□ -0.96
ASM4YDL088C YIL055CP40523 627 aaKnown RBP9.01□□□□□ -0.97
ASM4YDL088C PTP3P40048 928 aa8.99□□□□□ -0.97
ASM4YDL088C SLX5P32828 619 aaKnown RBP8.95□□□□□ -0.98
ASM4YDL088C TIF4632P39936 914 aaKnown RBP8.9□□□□□ -0.98
ASM4YDL088C YAH1Q12184 172 aaKnown RBP8.89□□□□□ -0.99
ASM4YDL088C EPS1P40557 701 aa8.83□□□□□ -1
ASM4YDL088C RSM7P47150 247 aa8.82□□□□□ -1
ASM4YDL088C TGL3P40308 642 aa8.81□□□□□ -1
ASM4YDL088C BDF1P35817 686 aa8.78□□□□□ -1
ASM4YDL088C BBC1P47068 1157 aa8.76□□□□□ -1.01
ASM4YDL088C BUD31P25337 157 aaPredicted RBP8.75□□□□□ -1.01
ASM4YDL088C AI2P03876 854 aa8.73□□□□□ -1.01
ASM4YDL088C YLR271WQ06152 274 aa8.67□□□□□ -1.02
ASM4YDL088C SSP1P38871 571 aa8.63□□□□□ -1.03
ASM4YDL088C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.61□□□□□ -1.03not detected
ASM4YDL088C UBP9P39967 754 aa8.55□□□□□ -1.04
ASM4YDL088C PSD2P53037 1138 aaKnown RBP8.5□□□□□ -1.05
ASM4YDL088C YOR238WQ08634 303 aa8.47□□□□□ -1.05
ASM4YDL088C MRM1P25270 412 aa8.44□□□□□ -1.06
ASM4YDL088C YAP5P40574 245 aa8.44□□□□□ -1.06
ASM4YDL088C NSR1P27476 414 aaKnown RBP RIP-Chip data8.42□□□□□ -1.06not detected
ASM4YDL088C MGA2P40578 1113 aa8.4□□□□□ -1.06
ASM4YDL088C MST1P07236 462 aa8.39□□□□□ -1.07
ASM4YDL088C CST9Q06032 482 aa8.37□□□□□ -1.07
ASM4YDL088C SIS1P25294 352 aaKnown RBP8.33□□□□□ -1.08
ASM4YDL088C YBL029C-AQ3E756 94 aa8.31□□□□□ -1.08
ASM4YDL088C GTT3P39996 337 aa8.3□□□□□ -1.08
ASM4YDL088C PIB1Q06651 286 aa8.28□□□□□ -1.08
ASM4YDL088C WSC3Q12215 556 aa8.27□□□□□ -1.09
ASM4YDL088C RTG3P38165 486 aa8.26□□□□□ -1.09
ASM4YDL088C VNX1P42839 908 aa8.22□□□□□ -1.09
ASM4YDL088C YMR1P47147 688 aaKnown RBP RIP-Chip data8.21□□□□□ -1.1not detected
ASM4YDL088C SPP1Q03012 353 aa8.19□□□□□ -1.1
ASM4YDL088C VPS29P38759 282 aa8.18□□□□□ -1.1
ASM4YDL088C DBP1P24784 617 aaKnown RBP8.17□□□□□ -1.1
ASM4YDL088C YFR006WP43590 535 aa8.16□□□□□ -1.1
ASM4YDL088C RCR1P38212 213 aa8.14□□□□□ -1.11
ASM4YDL088C TIF11P38912 153 aaKnown RBP8.1□□□□□ -1.11
ASM4YDL088C STS1P38637 319 aa8.1□□□□□ -1.11
ASM4YDL088C VMA1P17255 1071 aaKnown RBP8.04□□□□□ -1.12
ASM4YDL088C ULI1P43604 169 aa8.04□□□□□ -1.12
ASM4YDL088C SET4P42948 560 aa8.03□□□□□ -1.12
ASM4YDL088C YOL036WQ08206 761 aa8.02□□□□□ -1.13
ASM4YDL088C MSB4Q12317 492 aa8.02□□□□□ -1.13
ASM4YDL088C EAP1P36041 632 aaKnown RBP8.01□□□□□ -1.13
ASM4YDL088C LDB19Q12502 818 aa7.98□□□□□ -1.13
ASM4YDL088C SAM3Q08986 587 aa7.96□□□□□ -1.14
ASM4YDL088C RAM2P29703 316 aa7.95□□□□□ -1.14
ASM4YDL088C IOC2Q12072 812 aa7.94□□□□□ -1.14
ASM4YDL088C TRP5P00931 707 aaKnown RBP7.93□□□□□ -1.14
ASM4YDL088C YJL171CP46992 396 aa7.93□□□□□ -1.14
ASM4YDL088C MAK11P20484 414 aaKnown RBP7.92□□□□□ -1.14
ASM4YDL088C MIF2P35201 549 aa7.92□□□□□ -1.14
ASM4YDL088C FKH1P40466 484 aa7.92□□□□□ -1.14
ASM4YDL088C GYP5Q12344 894 aa7.92□□□□□ -1.14
ASM4YDL088C AIR2Q12476 344 aaKnown RBP7.9□□□□□ -1.14
ASM4YDL088C RTG1P32607 177 aa7.88□□□□□ -1.15
ASM4YDL088C ABP1P15891 592 aaKnown RBP7.87□□□□□ -1.15
ASM4YDL088C DCW1P36091 449 aa7.86□□□□□ -1.15
ASM4YDL088C HTA1P04911 132 aaKnown RBP7.84□□□□□ -1.15
ASM4YDL088C HTA2P04912 132 aa7.84□□□□□ -1.15
ASM4YDL088C YNL035CP53962 389 aaKnown RBP7.84□□□□□ -1.15
ASM4YDL088C GRE2Q12068 342 aaKnown RBP7.84□□□□□ -1.15
ASM4YDL088C COQ8P27697 501 aa7.82□□□□□ -1.16
ASM4YDL088C NCR1Q12200 1170 aa7.82□□□□□ -1.16
ASM4YDL088C TFG1P41895 735 aaPredicted RBP7.8□□□□□ -1.16
ASM4YDL088C ATH1P48016 1211 aa7.8□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms