RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W DRS1P32892 752 aaKnown RBP3.16□□□□□ -1.9
CDC39YCR093W MTC1P47018 478 aaKnown RBP2.98□□□□□ -1.93
CDC39YCR093W BFR2Q06631 534 aaKnown RBP2.83□□□□□ -1.96
CDC39YCR093W FAP1P53971 965 aa2.77□□□□□ -1.97
CDC39YCR093W RQC2Q12532 1038 aaKnown RBP2.77□□□□□ -1.97
CDC39YCR093W TFA1P36100 482 aa2.75□□□□□ -1.97
CDC39YCR093W DIP2Q12220 943 aaPredicted RBP2.67□□□□□ -1.98
CDC39YCR093W ISW2Q08773 1120 aa2.61□□□□□ -1.99
CDC39YCR093W RSE1Q04693 1361 aaKnown RBP2.59□□□□□ -2
CDC39YCR093W AVT3P36062 692 aa2.58□□□□□ -2
CDC39YCR093W PRY3P47033 881 aa2.52□□□□□ -2.01
CDC39YCR093W REB1P21538 810 aa2.49□□□□□ -2.01
CDC39YCR093W RPG1P38249 964 aaKnown RBP2.44□□□□□ -2.02
CDC39YCR093W RPL17AP05740 184 aaKnown RBP2.4□□□□□ -2.03
CDC39YCR093W RPL17BP46990 184 aaKnown RBP2.4□□□□□ -2.03
CDC39YCR093W ARP8Q12386 881 aaKnown RBP RIP-Chip data2.37□□□□□ -2.03not detected
CDC39YCR093W PRI1P10363 409 aa2.36□□□□□ -2.03
CDC39YCR093W AAD16Q02895 342 aa2.33□□□□□ -2.04
CDC39YCR093W YIL055CP40523 627 aaKnown RBP2.32□□□□□ -2.04
CDC39YCR093W PTP3P40048 928 aa2.3□□□□□ -2.04
CDC39YCR093W MRPL32P25348 183 aa2.3□□□□□ -2.04
CDC39YCR093W HGH1P48362 394 aaKnown RBP2.29□□□□□ -2.04
CDC39YCR093W BBC1P47068 1157 aa2.27□□□□□ -2.05
CDC39YCR093W SSP1P38871 571 aa2.25□□□□□ -2.05
CDC39YCR093W TSR3Q12094 313 aaKnown RBP2.24□□□□□ -2.05
CDC39YCR093W RIM101P33400 625 aa2.23□□□□□ -2.05
CDC39YCR093W MON2P48563 1636 aaPredicted RBP2.23□□□□□ -2.05
CDC39YCR093W DMA1P38823 416 aa2.22□□□□□ -2.05
CDC39YCR093W LEO1P38439 464 aa2.21□□□□□ -2.06
CDC39YCR093W IFH1P39520 1085 aa2.21□□□□□ -2.06
CDC39YCR093W YAH1Q12184 172 aaKnown RBP2.2□□□□□ -2.06
CDC39YCR093W HAA1Q12753 694 aaKnown RBP2.2□□□□□ -2.06
CDC39YCR093W MGA2P40578 1113 aa2.18□□□□□ -2.06
CDC39YCR093W RSM7P47150 247 aa2.18□□□□□ -2.06
CDC39YCR093W SPT21P35209 758 aa2.17□□□□□ -2.06
CDC39YCR093W AI2P03876 854 aa2.15□□□□□ -2.07
CDC39YCR093W RTG3P38165 486 aa2.15□□□□□ -2.07
CDC39YCR093W TAF7Q05021 590 aa2.14□□□□□ -2.07
CDC39YCR093W SPB4P25808 606 aaPredicted RBP2.14□□□□□ -2.07
CDC39YCR093W CKB1P43639 278 aa2.13□□□□□ -2.07
CDC39YCR093W TIF4632P39936 914 aaKnown RBP2.13□□□□□ -2.07
CDC39YCR093W RPP1BP10622 106 aaKnown RBP2.13□□□□□ -2.07
CDC39YCR093W YGL015CP33199 130 aa2.13□□□□□ -2.07
CDC39YCR093W YLR271WQ06152 274 aa2.12□□□□□ -2.07
CDC39YCR093W RPN1P38764 993 aaKnown RBP2.12□□□□□ -2.07
CDC39YCR093W KIC1P38692 1080 aa2.11□□□□□ -2.07
CDC39YCR093W LEU3P08638 886 aa2.1□□□□□ -2.07
CDC39YCR093W YKR023WP36119 530 aaKnown RBP2.09□□□□□ -2.07
CDC39YCR093W NOP53Q12080 455 aaKnown RBP2.09□□□□□ -2.08
CDC39YCR093W GTT3P39996 337 aa2.08□□□□□ -2.08
CDC39YCR093W UBP10P53874 792 aaPredicted RBP2.08□□□□□ -2.08
CDC39YCR093W OXP1P28273 1286 aa2.08□□□□□ -2.08
CDC39YCR093W TFC8Q12308 588 aa2.08□□□□□ -2.08
CDC39YCR093W ABP1P15891 592 aaKnown RBP2.07□□□□□ -2.08
CDC39YCR093W EPS1P40557 701 aa2.07□□□□□ -2.08
CDC39YCR093W HOP09932 586 aa2.06□□□□□ -2.08
CDC39YCR093W SET1P38827 1080 aaKnown RBP2.06□□□□□ -2.08
CDC39YCR093W SAS10Q12136 610 aaPredicted RBP2.06□□□□□ -2.08
CDC39YCR093W YMR1P47147 688 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
CDC39YCR093W TGL3P40308 642 aa2.05□□□□□ -2.08
CDC39YCR093W MAM3Q12296 706 aa2.05□□□□□ -2.08
CDC39YCR093W MAK11P20484 414 aaKnown RBP2.05□□□□□ -2.08
CDC39YCR093W SLX5P32828 619 aaKnown RBP2.04□□□□□ -2.08
CDC39YCR093W YAP5P40574 245 aa2.04□□□□□ -2.08
CDC39YCR093W MAK21Q12176 1025 aaKnown RBP2.04□□□□□ -2.08
CDC39YCR093W RLF2Q12495 606 aa2.04□□□□□ -2.08
CDC39YCR093W PBS2P08018 668 aa2.03□□□□□ -2.08
CDC39YCR093W MRM1P25270 412 aa2.03□□□□□ -2.08
CDC39YCR093W BRL1P38770 471 aa2.03□□□□□ -2.08
CDC39YCR093W PEX21P50091 288 aa2.03□□□□□ -2.08
CDC39YCR093W YCK3P39962 524 aa2.03□□□□□ -2.09
CDC39YCR093W ATH1P48016 1211 aa2.03□□□□□ -2.09
CDC39YCR093W ATF2P53296 535 aa2.03□□□□□ -2.09
CDC39YCR093W EAP1P36041 632 aaKnown RBP2.02□□□□□ -2.09
CDC39YCR093W VPS70P47161 811 aa2.02□□□□□ -2.09
CDC39YCR093W SCY1P53009 804 aa2.02□□□□□ -2.09
CDC39YCR093W YPR148CQ06523 435 aa2.02□□□□□ -2.09
CDC39YCR093W PSD2P53037 1138 aaKnown RBP2.02□□□□□ -2.09
CDC39YCR093W YNR021WP53723 404 aaKnown RBP2.02□□□□□ -2.09
CDC39YCR093W SSA2P10592 639 aaKnown RBP2.01□□□□□ -2.09
CDC39YCR093W TFG1P41895 735 aaPredicted RBP2.01□□□□□ -2.09
CDC39YCR093W DCD1P06773 312 aa2.01□□□□□ -2.09
CDC39YCR093W MIF2P35201 549 aa2□□□□□ -2.09
CDC39YCR093W UBP9P39967 754 aa2□□□□□ -2.09
CDC39YCR093W REF2P42073 533 aaPredicted RBP2□□□□□ -2.09
CDC39YCR093W YOR238WQ08634 303 aa2□□□□□ -2.09
CDC39YCR093W CDC27P38042 758 aa1.99□□□□□ -2.09
CDC39YCR093W BCH2P36122 765 aa1.99□□□□□ -2.09
CDC39YCR093W CLB5P30283 435 aa1.99□□□□□ -2.09
CDC39YCR093W BDF1P35817 686 aa1.99□□□□□ -2.09
CDC39YCR093W KIN1P13185 1064 aa1.98□□□□□ -2.09
CDC39YCR093W RPL34BP40525 121 aaKnown RBP1.98□□□□□ -2.09
CDC39YCR093W GRE2Q12068 342 aaKnown RBP1.98□□□□□ -2.09
CDC39YCR093W AIM44Q99299 758 aa1.98□□□□□ -2.09
CDC39YCR093W AIM7Q12156 149 aa1.98□□□□□ -2.09
CDC39YCR093W CST9Q06032 482 aa1.97□□□□□ -2.09
CDC39YCR093W HTA1P04911 132 aaKnown RBP1.97□□□□□ -2.09
CDC39YCR093W HTA2P04912 132 aa1.97□□□□□ -2.09
CDC39YCR093W NSR1P27476 414 aaKnown RBP RIP-Chip data1.97□□□□□ -2.09not detected
CDC39YCR093W MSB4Q12317 492 aa1.97□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms