RNA–Protein interactions for RNA: ENST00000640463.1

SPIN3-239, Transcript of spindlin family member 3, humanhuman

TSL 5

Gene SPIN3, Length 3,133 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIN3-239ENST00000640463 NISCHQ9Y2I1 1504 aa28.68■■■□□ 2.18
SPIN3-239ENST00000640463 SHROOM4Q9ULL8 1493 aa24.75■■□□□ 1.55
SPIN3-239ENST00000640463 SUPT5HO00267 1087 aaKnown RBP24.3■■□□□ 1.48
SPIN3-239ENST00000640463 ZCCHC6Q5VYS8 1495 aaKnown RBP24.25■■□□□ 1.47
SPIN3-239ENST00000640463 CCDC180Q9P1Z9 1646 aa24.25■■□□□ 1.47
SPIN3-239ENST00000640463 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
SPIN3-239ENST00000640463 CHIC1Q5VXU3 224 aa23.56■■□□□ 1.36
SPIN3-239ENST00000640463 MYO15BQ96JP2 1530 aa23.51■■□□□ 1.35
SPIN3-239ENST00000640463 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
SPIN3-239ENST00000640463 PCGF6Q9BYE7 350 aa22.99■■□□□ 1.27
SPIN3-239ENST00000640463 LOC105371045A0A1W2PR82 267 aa22.97■■□□□ 1.27
SPIN3-239ENST00000640463 HRCP23327 699 aa22.93■■□□□ 1.26
SPIN3-239ENST00000640463 SCRIBQ14160 1630 aa22.93■■□□□ 1.26
SPIN3-239ENST00000640463 ABCC9O60706 1549 aa22.9■■□□□ 1.26
SPIN3-239ENST00000640463 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
SPIN3-239ENST00000640463 PPARGC1BQ86YN6 1023 aaKnown RBP22.61■■□□□ 1.21
SPIN3-239ENST00000640463 RB1CC1Q8TDY2 1594 aa22.58■■□□□ 1.2
SPIN3-239ENST00000640463 TRIM41Q8WV44 630 aa22.55■■□□□ 1.2
SPIN3-239ENST00000640463 FAM9AQ8IZU1 332 aaPredicted RBP22.5■■□□□ 1.19
SPIN3-239ENST00000640463 CECR2Q9BXF3 1484 aa22.47■■□□□ 1.19
SPIN3-239ENST00000640463 NACADO15069 1562 aa22.44■■□□□ 1.18
SPIN3-239ENST00000640463 TRIM26Q12899 539 aaPredicted RBP22.42■■□□□ 1.18
SPIN3-239ENST00000640463 EHMT2Q96KQ7 1210 aa22.4■■□□□ 1.18
SPIN3-239ENST00000640463 MROH2BQ7Z745 1585 aa22.37■■□□□ 1.17
SPIN3-239ENST00000640463 WIZO95785 1651 aa22.27■■□□□ 1.16
SPIN3-239ENST00000640463 BAZ1AQ9NRL2 1556 aaPredicted RBP22.03■■□□□ 1.12
SPIN3-239ENST00000640463 EIF4G1Q04637 1599 aaKnown RBP21.89■■□□□ 1.1
SPIN3-239ENST00000640463 ZEB1P37275 1124 aaPredicted RBP21.88■■□□□ 1.09
SPIN3-239ENST00000640463 ABCC8Q09428 1581 aa21.84■■□□□ 1.09
SPIN3-239ENST00000640463 UNC13AQ9UPW8 1703 aa21.84■■□□□ 1.09
SPIN3-239ENST00000640463 SMARCA4P51532 1647 aa21.84■■□□□ 1.09
SPIN3-239ENST00000640463 TOP2AP11388 1531 aaKnown RBP21.82■■□□□ 1.08
SPIN3-239ENST00000640463 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
SPIN3-239ENST00000640463 SMARCA2P51531 1590 aa21.75■■□□□ 1.07
SPIN3-239ENST00000640463 PABPN1Q86U42 306 aaKnown RBP eCLIP21.74■■□□□ 1.07
SPIN3-239ENST00000640463 TTBK1Q5TCY1 1321 aaPredicted RBP21.68■■□□□ 1.06
SPIN3-239ENST00000640463 SOGA1O94964 1423 aa21.64■■□□□ 1.06
SPIN3-239ENST00000640463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.64■■□□□ 1.05
SPIN3-239ENST00000640463 RUSC2Q8N2Y8 1516 aa21.56■■□□□ 1.04
SPIN3-239ENST00000640463 BICRAQ9NZM4 1560 aa21.53■■□□□ 1.04
SPIN3-239ENST00000640463 CEP162Q5TB80 1403 aa21.53■■□□□ 1.04
SPIN3-239ENST00000640463 CCER1Q8TC90 406 aaPredicted RBP21.53■■□□□ 1.04
SPIN3-239ENST00000640463 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
SPIN3-239ENST00000640463 CSRNP3Q8WYN3 585 aa21.5■■□□□ 1.03
SPIN3-239ENST00000640463 TNIKQ9UKE5 1360 aa21.44■■□□□ 1.02
SPIN3-239ENST00000640463 WRNQ14191 1432 aaPredicted RBP eCLIP21.43■■□□□ 1.02
SPIN3-239ENST00000640463 EEA1Q15075 1411 aa21.37■■□□□ 1.01
SPIN3-239ENST00000640463 PEG3Q9GZU2 1588 aa21.32■■□□□ 1
SPIN3-239ENST00000640463 GOLGA3Q08378 1498 aa21.31■■□□□ 1
SPIN3-239ENST00000640463 SYNJ1O43426 1573 aa21.3■■□□□ 1
SPIN3-239ENST00000640463 ATAD2BQ9ULI0 1458 aa21.27■■□□□ 1
SPIN3-239ENST00000640463 SCAF1Q9H7N4 1312 aaKnown RBP21.23■□□□□ 0.99
SPIN3-239ENST00000640463 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
SPIN3-239ENST00000640463 RANGAP1P46060 587 aaPredicted RBP21.2■□□□□ 0.98
SPIN3-239ENST00000640463 CEP164Q9UPV0 1460 aa21.17■□□□□ 0.98
SPIN3-239ENST00000640463 DIEXFQ68CQ4 756 aaKnown RBP21.12■□□□□ 0.97
SPIN3-239ENST00000640463 CLIP1P30622 1438 aa21.12■□□□□ 0.97
SPIN3-239ENST00000640463 KIF21BO75037 1637 aa21.11■□□□□ 0.97
SPIN3-239ENST00000640463 HNRNPUL2Q1KMD3 747 aaKnown RBP21.11■□□□□ 0.97
SPIN3-239ENST00000640463 RAPGEF2Q9Y4G8 1499 aa21.09■□□□□ 0.97
SPIN3-239ENST00000640463 VPS8Q8N3P4 1428 aa21■□□□□ 0.95
SPIN3-239ENST00000640463 NEUROD1Q13562 356 aa21■□□□□ 0.95
SPIN3-239ENST00000640463 APLP2Q06481 763 aa20.99■□□□□ 0.95
SPIN3-239ENST00000640463 ACIN1Q9UKV3 1341 aaKnown RBP20.97■□□□□ 0.95
SPIN3-239ENST00000640463 TOP2BQ02880 1626 aa20.96■□□□□ 0.95
SPIN3-239ENST00000640463 ZNF316A6NFI3 1004 aaPredicted RBP20.92■□□□□ 0.94
SPIN3-239ENST00000640463 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
SPIN3-239ENST00000640463 CENPBP07199 599 aaPredicted RBP20.8■□□□□ 0.92
SPIN3-239ENST00000640463 CUX1P39880 1505 aa20.8■□□□□ 0.92
SPIN3-239ENST00000640463 NCAPD3P42695 1498 aa20.79■□□□□ 0.92
SPIN3-239ENST00000640463 PRXQ9BXM0 1461 aa20.79■□□□□ 0.92
SPIN3-239ENST00000640463 GTF3C3Q9Y5Q9 886 aa20.78■□□□□ 0.92
SPIN3-239ENST00000640463 HMGXB3Q12766 1538 aa20.76■□□□□ 0.91
SPIN3-239ENST00000640463 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
SPIN3-239ENST00000640463 KANK4Q5T7N3 995 aaPredicted RBP20.76■□□□□ 0.91
SPIN3-239ENST00000640463 PELP1Q8IZL8 1130 aaKnown RBP20.75■□□□□ 0.91
SPIN3-239ENST00000640463 YTHDC1Q96MU7 727 aaKnown RBP20.75■□□□□ 0.91
SPIN3-239ENST00000640463 ERICH3Q5RHP9 1530 aa20.75■□□□□ 0.91
SPIN3-239ENST00000640463 KIF27Q86VH2 1401 aa20.71■□□□□ 0.91
SPIN3-239ENST00000640463 MIER1Q8N108 512 aa20.7■□□□□ 0.9
SPIN3-239ENST00000640463 CFTRP13569 1480 aa20.67■□□□□ 0.9
SPIN3-239ENST00000640463 DHX57Q6P158 1386 aaKnown RBP20.58■□□□□ 0.89
SPIN3-239ENST00000640463 ARHGAP35Q9NRY4 1499 aa20.57■□□□□ 0.88
SPIN3-239ENST00000640463 ITGAEP38570 1179 aa20.57■□□□□ 0.88
SPIN3-239ENST00000640463 CUX2O14529 1486 aa20.54■□□□□ 0.88
SPIN3-239ENST00000640463 IGF1RP08069 1367 aa20.5■□□□□ 0.87
SPIN3-239ENST00000640463 RRBP1Q9P2E9 1410 aaKnown RBP20.49■□□□□ 0.87
SPIN3-239ENST00000640463 CCNB3Q8WWL7 1395 aa20.46■□□□□ 0.87
SPIN3-239ENST00000640463 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
SPIN3-239ENST00000640463 CLSPNQ9HAW4 1339 aa20.45■□□□□ 0.87
SPIN3-239ENST00000640463 PRDM2Q13029 1718 aa20.45■□□□□ 0.86
SPIN3-239ENST00000640463 FGD5Q6ZNL6 1462 aa20.43■□□□□ 0.86
SPIN3-239ENST00000640463 CARMIL1Q5VZK9 1371 aa20.43■□□□□ 0.86
SPIN3-239ENST00000640463 P3H3Q8IVL6 736 aa20.4■□□□□ 0.86
SPIN3-239ENST00000640463 ATP1B4Q9UN42 357 aaPredicted RBP20.36■□□□□ 0.85
SPIN3-239ENST00000640463 TIAM1Q13009 1591 aa20.33■□□□□ 0.84
SPIN3-239ENST00000640463 RAB3GAP2Q9H2M9 1393 aa20.32■□□□□ 0.84
SPIN3-239ENST00000640463 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
SPIN3-239ENST00000640463 FAM50AQ14320 339 aaKnown RBP20.29■□□□□ 0.84
SPIN3-239ENST00000640463 FANCD2Q9BXW9 1451 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms