RNA–Protein interactions for RNA: ENST00000640413.1

AP3S1-209, Transcript of adaptor related protein complex 3 subunit sigma 1, humanhuman

TSL 5 BASIC

Gene AP3S1, Length 489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S1-209ENST00000640413 AEBP2Q6ZN18 517 aaPredicted RBP28.9■■■□□ 2.22
AP3S1-209ENST00000640413 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
AP3S1-209ENST00000640413 SENP3Q9H4L4 574 aaPredicted RBP24.58■■□□□ 1.53
AP3S1-209ENST00000640413 PHF23Q9BUL5 403 aaPredicted RBP24.31■■□□□ 1.48
AP3S1-209ENST00000640413 FOXD1Q16676 465 aa22.98■■□□□ 1.27
AP3S1-209ENST00000640413 PLPPR3Q6T4P5 718 aa21.79■■□□□ 1.08
AP3S1-209ENST00000640413 PPP6R1Q9UPN7 881 aa21.47■■□□□ 1.03
AP3S1-209ENST00000640413 MSH5O43196 834 aa21.46■■□□□ 1.03
AP3S1-209ENST00000640413 PIAS4Q8N2W9 510 aaPredicted RBP21.45■■□□□ 1.02
AP3S1-209ENST00000640413 ADRA2BP18089 450 aa21.4■■□□□ 1.02
AP3S1-209ENST00000640413 POTEDQ86YR6 584 aa21.11■□□□□ 0.97
AP3S1-209ENST00000640413 MAPK8IP2Q13387 824 aaPredicted RBP19.7■□□□□ 0.74
AP3S1-209ENST00000640413 DMRT2Q9Y5R5 561 aa19.5■□□□□ 0.71
AP3S1-209ENST00000640413 SCAF1Q9H7N4 1312 aaKnown RBP19.49■□□□□ 0.71
AP3S1-209ENST00000640413 PPP4R3CPQ6ZMV5 832 aa19.14■□□□□ 0.65
AP3S1-209ENST00000640413 DCAF8L1A6NGE4 600 aa18.78■□□□□ 0.6
AP3S1-209ENST00000640413 HOXD11P31277 338 aaPredicted RBP18.75■□□□□ 0.59
AP3S1-209ENST00000640413 CNKSR2Q8WXI2 1034 aa18.75■□□□□ 0.59
AP3S1-209ENST00000640413 RNF216Q9NWF9 866 aaPredicted RBP18.59■□□□□ 0.57
AP3S1-209ENST00000640413 CACNB1Q02641 598 aaPredicted RBP18.51■□□□□ 0.55
AP3S1-209ENST00000640413 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.52
AP3S1-209ENST00000640413 RNF39Q9H2S5 420 aa18.33■□□□□ 0.52
AP3S1-209ENST00000640413 NPM3O75607 178 aaKnown RBP18.11■□□□□ 0.49
AP3S1-209ENST00000640413 DNAJC5BQ9UF47 199 aa18.04■□□□□ 0.48
AP3S1-209ENST00000640413 C1QBPQ07021 282 aaKnown RBP18.03■□□□□ 0.48
AP3S1-209ENST00000640413 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.46
AP3S1-209ENST00000640413 KCNA4P22459 653 aa17.74■□□□□ 0.43
AP3S1-209ENST00000640413 U3KPZ7 1027 aaPredicted RBP17.52■□□□□ 0.4
AP3S1-209ENST00000640413 SLC4A2P04920 1241 aa17.33■□□□□ 0.36
AP3S1-209ENST00000640413 SPINK5Q9NQ38 1064 aaPredicted RBP17.32■□□□□ 0.36
AP3S1-209ENST00000640413 CAPN15O75808 1086 aa17.28■□□□□ 0.36
AP3S1-209ENST00000640413 DSG3P32926 999 aa17.17■□□□□ 0.34
AP3S1-209ENST00000640413 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
AP3S1-209ENST00000640413 APLP2Q06481 763 aa16.94■□□□□ 0.3
AP3S1-209ENST00000640413 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.92■□□□□ 0.3
AP3S1-209ENST00000640413 HNRNPUL2Q1KMD3 747 aaKnown RBP16.92■□□□□ 0.3
AP3S1-209ENST00000640413 ABCB7O75027 752 aa16.9■□□□□ 0.3
AP3S1-209ENST00000640413 ZNF219Q9P2Y4 722 aaPredicted RBP16.89■□□□□ 0.29
AP3S1-209ENST00000640413 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
AP3S1-209ENST00000640413 MYCNP04198 464 aaPredicted RBP16.72■□□□□ 0.27
AP3S1-209ENST00000640413 SLC4A1APQ9BWU0 796 aaKnown RBP16.71■□□□□ 0.27
AP3S1-209ENST00000640413 FOXD4L1Q9NU39 408 aa16.53■□□□□ 0.24
AP3S1-209ENST00000640413 POTEHQ6S545 545 aa16.52■□□□□ 0.24
AP3S1-209ENST00000640413 POLA2Q14181 598 aa16.51■□□□□ 0.23
AP3S1-209ENST00000640413 ATF5Q9Y2D1 282 aaPredicted RBP16.42■□□□□ 0.22
AP3S1-209ENST00000640413 ZBTB22O15209 634 aa16.32■□□□□ 0.2
AP3S1-209ENST00000640413 RBM42Q9BTD8 480 aaKnown RBP16.32■□□□□ 0.2
AP3S1-209ENST00000640413 ZBTB12Q9Y330 459 aaPredicted RBP16.08■□□□□ 0.16
AP3S1-209ENST00000640413 CHRDL2Q6WN34 429 aa16.04■□□□□ 0.16
AP3S1-209ENST00000640413 OSCARQ8IYS5 282 aa15.99■□□□□ 0.15
AP3S1-209ENST00000640413 ATXN8OSP0DMR3 200 aa15.98■□□□□ 0.15
AP3S1-209ENST00000640413 AKT1S1Q96B36 256 aa15.96■□□□□ 0.15
AP3S1-209ENST00000640413 REM2Q8IYK8 340 aaPredicted RBP15.85■□□□□ 0.13
AP3S1-209ENST00000640413 FBLN2P98095 1184 aa15.71■□□□□ 0.11
AP3S1-209ENST00000640413 PITPNM1O00562 1244 aa15.68■□□□□ 0.1
AP3S1-209ENST00000640413 PIP4P2Q8N4L2 257 aa15.66■□□□□ 0.1
AP3S1-209ENST00000640413 MKRN4PQ13434 485 aaPredicted RBP15.63■□□□□ 0.09
AP3S1-209ENST00000640413 SPDYE2BA6NHP3 402 aa15.62■□□□□ 0.09
AP3S1-209ENST00000640413 SPDYE6P0CI01 402 aa15.62■□□□□ 0.09
AP3S1-209ENST00000640413 SPDYE2Q495Y8 402 aa15.62■□□□□ 0.09
AP3S1-209ENST00000640413 FXR2P51116 673 aaKnown RBP eCLIP15.54■□□□□ 0.08
AP3S1-209ENST00000640413 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
AP3S1-209ENST00000640413 ZNF692Q9BU19 519 aaPredicted RBP15.46■□□□□ 0.07
AP3S1-209ENST00000640413 SP7Q8TDD2 431 aaPredicted RBP15.45■□□□□ 0.06
AP3S1-209ENST00000640413 HAX1O00165 279 aa15.41■□□□□ 0.06
AP3S1-209ENST00000640413 CLEC11AQ9Y240 323 aa15.41■□□□□ 0.06
AP3S1-209ENST00000640413 SSUH2Q9Y2M2 353 aa15.41■□□□□ 0.06
AP3S1-209ENST00000640413 SPDYE1Q8NFV5 336 aaPredicted RBP15.36■□□□□ 0.05
AP3S1-209ENST00000640413 EHMT2Q96KQ7 1210 aa15.3■□□□□ 0.04
AP3S1-209ENST00000640413 PRKAR2AP13861 404 aaKnown RBP15.28■□□□□ 0.04
AP3S1-209ENST00000640413 EVX2Q03828 476 aa15.25■□□□□ 0.03
AP3S1-209ENST00000640413 PABPN1Q86U42 306 aaKnown RBP eCLIP15.24■□□□□ 0.03
AP3S1-209ENST00000640413 CHADLQ6NUI6 762 aa15.15■□□□□ 0.02
AP3S1-209ENST00000640413 PRR29P0C7W0 189 aa15.12■□□□□ 0.01
AP3S1-209ENST00000640413 C19orf67A6NJJ6 358 aa15.05■□□□□ -0
AP3S1-209ENST00000640413 GABBR2O75899 941 aa14.86□□□□□ -0.03
AP3S1-209ENST00000640413 SPDYE4A6NLX3 237 aa14.85□□□□□ -0.03
AP3S1-209ENST00000640413 FARP1Q9Y4F1 1045 aaPredicted RBP14.85□□□□□ -0.03
AP3S1-209ENST00000640413 CD44P16070 742 aaKnown RBP14.79□□□□□ -0.04
AP3S1-209ENST00000640413 STAG3Q9UJ98 1225 aa14.75□□□□□ -0.05
AP3S1-209ENST00000640413 CREBZFQ9NS37 354 aa14.73□□□□□ -0.05
AP3S1-209ENST00000640413 ZRANB1Q9UGI0 708 aa14.59□□□□□ -0.07
AP3S1-209ENST00000640413 POTEIP0CG38 1075 aa14.56□□□□□ -0.08
AP3S1-209ENST00000640413 ZNF579Q8NAF0 562 aaKnown RBP14.53□□□□□ -0.08
AP3S1-209ENST00000640413 LHX8Q68G74 356 aa14.51□□□□□ -0.09
AP3S1-209ENST00000640413 CLCN6P51797 869 aa14.5□□□□□ -0.09
AP3S1-209ENST00000640413 MNX1P50219 401 aaPredicted RBP14.46□□□□□ -0.09
AP3S1-209ENST00000640413 PROM2Q8N271 834 aa14.44□□□□□ -0.1
AP3S1-209ENST00000640413 DCBLD2Q96PD2 775 aa14.44□□□□□ -0.1
AP3S1-209ENST00000640413 NPM1P06748 294 aaKnown RBP eCLIP14.42□□□□□ -0.1
AP3S1-209ENST00000640413 GALR2O43603 387 aaPredicted RBP14.4□□□□□ -0.1
AP3S1-209ENST00000640413 PAK3O75914 559 aaPredicted RBP14.4□□□□□ -0.1
AP3S1-209ENST00000640413 PHF12Q96QT6 1004 aa14.39□□□□□ -0.11
AP3S1-209ENST00000640413 TSPYL2Q9H2G4 693 aaPredicted RBP14.23□□□□□ -0.13
AP3S1-209ENST00000640413 MIER1Q8N108 512 aa14.19□□□□□ -0.14
AP3S1-209ENST00000640413 MS4A3Q96HJ5 214 aa14.19□□□□□ -0.14
AP3S1-209ENST00000640413 PELP1Q8IZL8 1130 aaKnown RBP14.15□□□□□ -0.14
AP3S1-209ENST00000640413 PLEKHG5O94827 1062 aa14.12□□□□□ -0.15
AP3S1-209ENST00000640413 CCDC61Q9Y6R9 512 aa14.12□□□□□ -0.15
AP3S1-209ENST00000640413 POTEB2H3BUK9 544 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms