RNA–Protein interactions for RNA: ENST00000639240.1

ATM-228, Transcript of ATM serine/threonine kinase, humanhuman

TSL 5 BASIC

Gene ATM, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-228ENST00000639240 AEBP2Q6ZN18 517 aaPredicted RBP21■□□□□ 0.95
ATM-228ENST00000639240 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
ATM-228ENST00000639240 SENP3Q9H4L4 574 aaPredicted RBP17.7■□□□□ 0.42
ATM-228ENST00000639240 PHF23Q9BUL5 403 aaPredicted RBP17.63■□□□□ 0.41
ATM-228ENST00000639240 POTEDQ86YR6 584 aa17.23■□□□□ 0.35
ATM-228ENST00000639240 FOXD1Q16676 465 aa16.6■□□□□ 0.25
ATM-228ENST00000639240 PLPPR3Q6T4P5 718 aa15.94■□□□□ 0.14
ATM-228ENST00000639240 PPP6R1Q9UPN7 881 aa15.71■□□□□ 0.11
ATM-228ENST00000639240 MSH5O43196 834 aa15.64■□□□□ 0.09
ATM-228ENST00000639240 ADRA2BP18089 450 aa15.62■□□□□ 0.09
ATM-228ENST00000639240 PIAS4Q8N2W9 510 aaPredicted RBP15.46■□□□□ 0.07
ATM-228ENST00000639240 MAPK8IP2Q13387 824 aaPredicted RBP14.34□□□□□ -0.11
ATM-228ENST00000639240 CACNB1Q02641 598 aaPredicted RBP14.12□□□□□ -0.15
ATM-228ENST00000639240 DMRT2Q9Y5R5 561 aa14.11□□□□□ -0.15
ATM-228ENST00000639240 SCAF1Q9H7N4 1312 aaKnown RBP14.08□□□□□ -0.16
ATM-228ENST00000639240 PPP4R3CPQ6ZMV5 832 aa14.06□□□□□ -0.16
ATM-228ENST00000639240 CNKSR2Q8WXI2 1034 aa13.71□□□□□ -0.21
ATM-228ENST00000639240 HOXD11P31277 338 aaPredicted RBP13.66□□□□□ -0.22
ATM-228ENST00000639240 RNF216Q9NWF9 866 aaPredicted RBP13.56□□□□□ -0.24
ATM-228ENST00000639240 DCAF8L1A6NGE4 600 aa13.46□□□□□ -0.25
ATM-228ENST00000639240 NCBP3Q53F19 620 aaKnown RBP13.42□□□□□ -0.26
ATM-228ENST00000639240 NPM3O75607 178 aaKnown RBP13.39□□□□□ -0.27
ATM-228ENST00000639240 KCNA4P22459 653 aa13.29□□□□□ -0.28
ATM-228ENST00000639240 POTEHQ6S545 545 aa13.27□□□□□ -0.29
ATM-228ENST00000639240 RNF39Q9H2S5 420 aa13.26□□□□□ -0.29
ATM-228ENST00000639240 DNAJC5BQ9UF47 199 aa13.09□□□□□ -0.31
ATM-228ENST00000639240 C1QBPQ07021 282 aaKnown RBP12.99□□□□□ -0.33
ATM-228ENST00000639240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.94□□□□□ -0.349e-10■■□□□ 12.4
ATM-228ENST00000639240 SLC4A2P04920 1241 aa12.81□□□□□ -0.36
ATM-228ENST00000639240 U3KPZ7 1027 aaPredicted RBP12.79□□□□□ -0.36
ATM-228ENST00000639240 SPINK5Q9NQ38 1064 aaPredicted RBP12.58□□□□□ -0.4
ATM-228ENST00000639240 SLC4A1APQ9BWU0 796 aaKnown RBP12.48□□□□□ -0.41
ATM-228ENST00000639240 CAPN15O75808 1086 aa12.44□□□□□ -0.42
ATM-228ENST00000639240 DSG3P32926 999 aa12.42□□□□□ -0.42
ATM-228ENST00000639240 TRHP20396 242 aaPredicted RBP12.3□□□□□ -0.44
ATM-228ENST00000639240 ZBTB22O15209 634 aa12.29□□□□□ -0.44
ATM-228ENST00000639240 MYCNP04198 464 aaPredicted RBP12.29□□□□□ -0.44
ATM-228ENST00000639240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.28□□□□□ -0.44
ATM-228ENST00000639240 HNRNPUL2Q1KMD3 747 aaKnown RBP12.28□□□□□ -0.44
ATM-228ENST00000639240 SAMD1Q6SPF0 538 aaPredicted RBP12.26□□□□□ -0.45
ATM-228ENST00000639240 FOXD4L1Q9NU39 408 aa12.26□□□□□ -0.45
ATM-228ENST00000639240 ABCB7O75027 752 aa12.23□□□□□ -0.45
ATM-228ENST00000639240 ZNF219Q9P2Y4 722 aaPredicted RBP12.21□□□□□ -0.45
ATM-228ENST00000639240 APLP2Q06481 763 aa12.2□□□□□ -0.46
ATM-228ENST00000639240 ATF5Q9Y2D1 282 aaPredicted RBP12.17□□□□□ -0.46
ATM-228ENST00000639240 POLA2Q14181 598 aa12.03□□□□□ -0.48
ATM-228ENST00000639240 SP7Q8TDD2 431 aaPredicted RBP11.9□□□□□ -0.5
ATM-228ENST00000639240 ATXN8OSP0DMR3 200 aa11.83□□□□□ -0.52
ATM-228ENST00000639240 CSRNP3Q8WYN3 585 aa11.81□□□□□ -0.52
ATM-228ENST00000639240 CHRDL2Q6WN34 429 aa11.71□□□□□ -0.53
ATM-228ENST00000639240 RBM42Q9BTD8 480 aaKnown RBP11.69□□□□□ -0.54
ATM-228ENST00000639240 EHMT2Q96KQ7 1210 aa11.66□□□□□ -0.54
ATM-228ENST00000639240 OSCARQ8IYS5 282 aa11.65□□□□□ -0.54
ATM-228ENST00000639240 ZBTB12Q9Y330 459 aaPredicted RBP11.64□□□□□ -0.55
ATM-228ENST00000639240 MKRN4PQ13434 485 aaPredicted RBP11.59□□□□□ -0.55
ATM-228ENST00000639240 AKT1S1Q96B36 256 aa11.52□□□□□ -0.57
ATM-228ENST00000639240 REM2Q8IYK8 340 aaPredicted RBP11.47□□□□□ -0.57
ATM-228ENST00000639240 FBLN2P98095 1184 aa11.45□□□□□ -0.58
ATM-228ENST00000639240 PLSCR2Q9NRY7 297 aa11.39□□□□□ -0.59
ATM-228ENST00000639240 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
ATM-228ENST00000639240 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
ATM-228ENST00000639240 SPDYE2Q495Y8 402 aa11.38□□□□□ -0.59
ATM-228ENST00000639240 PITPNM1O00562 1244 aa11.35□□□□□ -0.59
ATM-228ENST00000639240 SSUH2Q9Y2M2 353 aa11.31□□□□□ -0.6
ATM-228ENST00000639240 HAX1O00165 279 aa11.29□□□□□ -0.6
ATM-228ENST00000639240 PIP4P2Q8N4L2 257 aa11.28□□□□□ -0.6
ATM-228ENST00000639240 ZNF692Q9BU19 519 aaPredicted RBP11.28□□□□□ -0.6
ATM-228ENST00000639240 FXR2P51116 673 aaKnown RBP eCLIP11.23□□□□□ -0.61
ATM-228ENST00000639240 LHX8Q68G74 356 aa11.15□□□□□ -0.62
ATM-228ENST00000639240 PABPN1Q86U42 306 aaKnown RBP eCLIP11.15□□□□□ -0.62
ATM-228ENST00000639240 CLEC11AQ9Y240 323 aa11.14□□□□□ -0.63
ATM-228ENST00000639240 SPDYE1Q8NFV5 336 aaPredicted RBP11.12□□□□□ -0.63
ATM-228ENST00000639240 EVX2Q03828 476 aa11.09□□□□□ -0.63
ATM-228ENST00000639240 PRKAR2AP13861 404 aaKnown RBP11.03□□□□□ -0.64
ATM-228ENST00000639240 SPDYE4A6NLX3 237 aa11□□□□□ -0.65
ATM-228ENST00000639240 CHADLQ6NUI6 762 aa11□□□□□ -0.65
ATM-228ENST00000639240 PRR29P0C7W0 189 aa10.96□□□□□ -0.65
ATM-228ENST00000639240 C19orf67A6NJJ6 358 aa10.86□□□□□ -0.67
ATM-228ENST00000639240 PROM2Q8N271 834 aa10.83□□□□□ -0.68
ATM-228ENST00000639240 CREBZFQ9NS37 354 aa10.81□□□□□ -0.68
ATM-228ENST00000639240 FARP1Q9Y4F1 1045 aaPredicted RBP10.79□□□□□ -0.68
ATM-228ENST00000639240 STAG3Q9UJ98 1225 aa10.77□□□□□ -0.69
ATM-228ENST00000639240 GABBR2O75899 941 aa10.76□□□□□ -0.69
ATM-228ENST00000639240 MNX1P50219 401 aaPredicted RBP10.69□□□□□ -0.7
ATM-228ENST00000639240 CD44P16070 742 aaKnown RBP10.67□□□□□ -0.7
ATM-228ENST00000639240 FKBP8Q14318 412 aa10.62□□□□□ -0.71
ATM-228ENST00000639240 POTEMA6NI47 508 aa10.56□□□□□ -0.72
ATM-228ENST00000639240 POTEIP0CG38 1075 aa10.54□□□□□ -0.72
ATM-228ENST00000639240 ZRANB1Q9UGI0 708 aa10.54□□□□□ -0.72
ATM-228ENST00000639240 ZNF579Q8NAF0 562 aaKnown RBP10.52□□□□□ -0.73
ATM-228ENST00000639240 POTEGQ6S5H5 508 aa10.48□□□□□ -0.73
ATM-228ENST00000639240 NPM1P06748 294 aaKnown RBP eCLIP10.47□□□□□ -0.73
ATM-228ENST00000639240 PHF12Q96QT6 1004 aa10.47□□□□□ -0.73
ATM-228ENST00000639240 MIER1Q8N108 512 aa10.46□□□□□ -0.73
ATM-228ENST00000639240 GALR2O43603 387 aaPredicted RBP10.45□□□□□ -0.74
ATM-228ENST00000639240 PCDH10Q9P2E7 1040 aa10.43□□□□□ -0.74
ATM-228ENST00000639240 CLCN6P51797 869 aa10.39□□□□□ -0.75
ATM-228ENST00000639240 RASEFQ8IZ41 740 aa10.38□□□□□ -0.75
ATM-228ENST00000639240 TSPYL2Q9H2G4 693 aaPredicted RBP10.38□□□□□ -0.75
ATM-228ENST00000639240 PAK3O75914 559 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms