RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 NISCHQ9Y2I1 1504 aa41.24■■■■■ 4.19
SYNGAP1-227ENST00000638142 SHROOM4Q9ULL8 1493 aa35.08■■■■□ 3.21
SYNGAP1-227ENST00000638142 CCDC180Q9P1Z9 1646 aa35.06■■■■□ 3.2
SYNGAP1-227ENST00000638142 ZCCHC6Q5VYS8 1495 aaKnown RBP34.97■■■■□ 3.19
SYNGAP1-227ENST00000638142 SUPT5HO00267 1087 aaKnown RBP34.53■■■■□ 3.12
SYNGAP1-227ENST00000638142 DCAF1Q9Y4B6 1507 aa33.97■■■■□ 3.03
SYNGAP1-227ENST00000638142 DCAF8L2P0C7V8 631 aa33.85■■■■□ 3.01
SYNGAP1-227ENST00000638142 CHIC1Q5VXU3 224 aa33.8■■■■□ 3
SYNGAP1-227ENST00000638142 MYO15BQ96JP2 1530 aa33.7■■■□□ 2.99
SYNGAP1-227ENST00000638142 HRCP23327 699 aa33.19■■■□□ 2.9
SYNGAP1-227ENST00000638142 ABCC9O60706 1549 aa33.05■■■□□ 2.88
SYNGAP1-227ENST00000638142 PCGF6Q9BYE7 350 aa32.9■■■□□ 2.86
SYNGAP1-227ENST00000638142 SCRIBQ14160 1630 aa32.72■■■□□ 2.83
SYNGAP1-227ENST00000638142 LOC105371045A0A1W2PR82 267 aa32.69■■■□□ 2.82
SYNGAP1-227ENST00000638142 RSF1Q96T23 1441 aaPredicted RBP32.68■■■□□ 2.82
SYNGAP1-227ENST00000638142 RB1CC1Q8TDY2 1594 aa32.44■■■□□ 2.78
SYNGAP1-227ENST00000638142 TRIM26Q12899 539 aaPredicted RBP32.36■■■□□ 2.77
SYNGAP1-227ENST00000638142 NACADO15069 1562 aa32.33■■■□□ 2.77
SYNGAP1-227ENST00000638142 PPARGC1BQ86YN6 1023 aaKnown RBP32.27■■■□□ 2.76
SYNGAP1-227ENST00000638142 TRIM41Q8WV44 630 aa32.24■■■□□ 2.75
SYNGAP1-227ENST00000638142 CECR2Q9BXF3 1484 aa32.05■■■□□ 2.72
SYNGAP1-227ENST00000638142 MROH2BQ7Z745 1585 aa32.01■■■□□ 2.71
SYNGAP1-227ENST00000638142 ZEB1P37275 1124 aaPredicted RBP31.85■■■□□ 2.69
SYNGAP1-227ENST00000638142 FAM9AQ8IZU1 332 aaPredicted RBP31.85■■■□□ 2.69
SYNGAP1-227ENST00000638142 WIZO95785 1651 aa31.84■■■□□ 2.69
SYNGAP1-227ENST00000638142 BAZ1AQ9NRL2 1556 aaPredicted RBP31.78■■■□□ 2.68
SYNGAP1-227ENST00000638142 EIF4G1Q04637 1599 aaKnown RBP31.63■■■□□ 2.65
SYNGAP1-227ENST00000638142 EHMT2Q96KQ7 1210 aa31.46■■■□□ 2.63
SYNGAP1-227ENST00000638142 TOP2AP11388 1531 aaKnown RBP31.45■■■□□ 2.63
SYNGAP1-227ENST00000638142 SMARCA4P51532 1647 aa31.37■■■□□ 2.61
SYNGAP1-227ENST00000638142 SMARCA2P51531 1590 aa31.25■■■□□ 2.59
SYNGAP1-227ENST00000638142 CCDC88BA6NC98 1476 aa31.25■■■□□ 2.59
SYNGAP1-227ENST00000638142 UNC13AQ9UPW8 1703 aa31.2■■■□□ 2.59
SYNGAP1-227ENST00000638142 ABCC8Q09428 1581 aa31.18■■■□□ 2.58
SYNGAP1-227ENST00000638142 WRNQ14191 1432 aaPredicted RBP eCLIP31.1■■■□□ 2.571e-7■■■■■ 66.8
SYNGAP1-227ENST00000638142 EEA1Q15075 1411 aa31.02■■■□□ 2.56
SYNGAP1-227ENST00000638142 CEP162Q5TB80 1403 aa30.97■■■□□ 2.55
SYNGAP1-227ENST00000638142 TNIKQ9UKE5 1360 aa30.95■■■□□ 2.55
SYNGAP1-227ENST00000638142 PELP1Q8IZL8 1130 aaKnown RBP30.94■■■□□ 2.54
SYNGAP1-227ENST00000638142 SOGA1O94964 1423 aa30.93■■■□□ 2.54
SYNGAP1-227ENST00000638142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.89■■■□□ 2.54
SYNGAP1-227ENST00000638142 CCER1Q8TC90 406 aaPredicted RBP30.89■■■□□ 2.54
SYNGAP1-227ENST00000638142 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
SYNGAP1-227ENST00000638142 CSRNP3Q8WYN3 585 aa30.83■■■□□ 2.53
SYNGAP1-227ENST00000638142 BICRAQ9NZM4 1560 aa30.81■■■□□ 2.52
SYNGAP1-227ENST00000638142 SCAF1Q9H7N4 1312 aaKnown RBP30.78■■■□□ 2.52
SYNGAP1-227ENST00000638142 GOLGA3Q08378 1498 aa30.74■■■□□ 2.51
SYNGAP1-227ENST00000638142 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
SYNGAP1-227ENST00000638142 UBTFP17480 764 aaKnown RBP30.66■■■□□ 2.5
SYNGAP1-227ENST00000638142 PABPN1Q86U42 306 aaKnown RBP eCLIP30.62■■■□□ 2.49
SYNGAP1-227ENST00000638142 CEP164Q9UPV0 1460 aa30.56■■■□□ 2.48
SYNGAP1-227ENST00000638142 TTBK1Q5TCY1 1321 aaPredicted RBP30.55■■■□□ 2.48
SYNGAP1-227ENST00000638142 KIF21BO75037 1637 aa30.55■■■□□ 2.48
SYNGAP1-227ENST00000638142 SYNJ1O43426 1573 aa30.53■■■□□ 2.48
SYNGAP1-227ENST00000638142 ATAD2BQ9ULI0 1458 aa30.48■■■□□ 2.47
SYNGAP1-227ENST00000638142 DIEXFQ68CQ4 756 aaKnown RBP30.43■■■□□ 2.46
SYNGAP1-227ENST00000638142 BAZ1BQ9UIG0 1483 aaKnown RBP30.41■■■□□ 2.46
SYNGAP1-227ENST00000638142 ACIN1Q9UKV3 1341 aaKnown RBP30.37■■■□□ 2.45
SYNGAP1-227ENST00000638142 CLIP1P30622 1438 aa30.35■■■□□ 2.45
SYNGAP1-227ENST00000638142 VPS8Q8N3P4 1428 aa30.29■■■□□ 2.44
SYNGAP1-227ENST00000638142 NEUROD1Q13562 356 aa30.22■■■□□ 2.43
SYNGAP1-227ENST00000638142 TOP2BQ02880 1626 aa30.21■■■□□ 2.43
SYNGAP1-227ENST00000638142 RAPGEF2Q9Y4G8 1499 aa30.21■■■□□ 2.43
SYNGAP1-227ENST00000638142 CENPBP07199 599 aaPredicted RBP30.21■■■□□ 2.43
SYNGAP1-227ENST00000638142 ZNF316A6NFI3 1004 aaPredicted RBP30.19■■■□□ 2.42
SYNGAP1-227ENST00000638142 BIVM-ERCC5R4GMW8 1640 aa30.12■■■□□ 2.41
SYNGAP1-227ENST00000638142 APLP2Q06481 763 aa30.09■■■□□ 2.41
SYNGAP1-227ENST00000638142 HNRNPUL2Q1KMD3 747 aaKnown RBP30.07■■■□□ 2.4
SYNGAP1-227ENST00000638142 ERICH3Q5RHP9 1530 aa30.04■■■□□ 2.4
SYNGAP1-227ENST00000638142 GTF3C3Q9Y5Q9 886 aa29.97■■■□□ 2.39
SYNGAP1-227ENST00000638142 PRXQ9BXM0 1461 aa29.96■■■□□ 2.39
SYNGAP1-227ENST00000638142 HMGXB3Q12766 1538 aa29.95■■■□□ 2.38
SYNGAP1-227ENST00000638142 NCAPD3P42695 1498 aa29.89■■■□□ 2.38
SYNGAP1-227ENST00000638142 ARAP1Q96P48 1450 aa29.84■■■□□ 2.37
SYNGAP1-227ENST00000638142 RANGAP1P46060 587 aaPredicted RBP29.82■■■□□ 2.36
SYNGAP1-227ENST00000638142 CUX1P39880 1505 aa29.8■■■□□ 2.36
SYNGAP1-227ENST00000638142 CLSPNQ9HAW4 1339 aa29.8■■■□□ 2.36
SYNGAP1-227ENST00000638142 KIF27Q86VH2 1401 aa29.77■■■□□ 2.36
SYNGAP1-227ENST00000638142 CFTRP13569 1480 aa29.71■■■□□ 2.35
SYNGAP1-227ENST00000638142 MIER1Q8N108 512 aa29.7■■■□□ 2.34
SYNGAP1-227ENST00000638142 DHX57Q6P158 1386 aaKnown RBP29.65■■■□□ 2.34
SYNGAP1-227ENST00000638142 RRBP1Q9P2E9 1410 aaKnown RBP29.64■■■□□ 2.34
SYNGAP1-227ENST00000638142 KANK4Q5T7N3 995 aaPredicted RBP29.61■■■□□ 2.33
SYNGAP1-227ENST00000638142 YTHDC1Q96MU7 727 aaKnown RBP29.59■■■□□ 2.33
SYNGAP1-227ENST00000638142 MYT1Q01538 1121 aa29.56■■■□□ 2.32
SYNGAP1-227ENST00000638142 ARHGAP35Q9NRY4 1499 aa29.55■■■□□ 2.32
SYNGAP1-227ENST00000638142 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
SYNGAP1-227ENST00000638142 CUX2O14529 1486 aa29.54■■■□□ 2.32
SYNGAP1-227ENST00000638142 CCNB3Q8WWL7 1395 aa29.46■■■□□ 2.31
SYNGAP1-227ENST00000638142 MAP3K1Q13233 1512 aa29.38■■■□□ 2.29
SYNGAP1-227ENST00000638142 IGF1RP08069 1367 aa29.37■■■□□ 2.29
SYNGAP1-227ENST00000638142 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
SYNGAP1-227ENST00000638142 TIAM1Q13009 1591 aa29.31■■■□□ 2.28
SYNGAP1-227ENST00000638142 CADPSQ9ULU8 1353 aa29.3■■■□□ 2.28
SYNGAP1-227ENST00000638142 CARMIL1Q5VZK9 1371 aa29.26■■■□□ 2.27
SYNGAP1-227ENST00000638142 FGD5Q6ZNL6 1462 aa29.24■■■□□ 2.27
SYNGAP1-227ENST00000638142 LRRC9Q6ZRR7 1453 aa29.18■■■□□ 2.26
SYNGAP1-227ENST00000638142 RAB3GAP2Q9H2M9 1393 aa29.18■■■□□ 2.26
SYNGAP1-227ENST00000638142 FHAD1B1AJZ9 1412 aa29.16■■■□□ 2.26
SYNGAP1-227ENST00000638142 ITGAEP38570 1179 aa29.14■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms