RNA–Protein interactions for RNA: ENST00000638139.1

SMARCA2-265, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 5

Gene SMARCA2, Length 2,675 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-265ENST00000638139 NISCHQ9Y2I1 1504 aa20.49■□□□□ 0.87
SMARCA2-265ENST00000638139 SHROOM4Q9ULL8 1493 aa17.58■□□□□ 0.4
SMARCA2-265ENST00000638139 ZCCHC6Q5VYS8 1495 aaKnown RBP17.36■□□□□ 0.37
SMARCA2-265ENST00000638139 CCDC180Q9P1Z9 1646 aa17.36■□□□□ 0.37
SMARCA2-265ENST00000638139 SUPT5HO00267 1087 aaKnown RBP17.3■□□□□ 0.36
SMARCA2-265ENST00000638139 MYO15BQ96JP2 1530 aa16.94■□□□□ 0.3
SMARCA2-265ENST00000638139 CHIC1Q5VXU3 224 aa16.93■□□□□ 0.3
SMARCA2-265ENST00000638139 DCAF8L2P0C7V8 631 aa16.9■□□□□ 0.3
SMARCA2-265ENST00000638139 DCAF1Q9Y4B6 1507 aa16.8■□□□□ 0.28
SMARCA2-265ENST00000638139 HRCP23327 699 aa16.7■□□□□ 0.26
SMARCA2-265ENST00000638139 PCGF6Q9BYE7 350 aa16.56■□□□□ 0.24
SMARCA2-265ENST00000638139 LOC105371045A0A1W2PR82 267 aa16.43■□□□□ 0.22
SMARCA2-265ENST00000638139 ABCC9O60706 1549 aa16.43■□□□□ 0.22
SMARCA2-265ENST00000638139 PPARGC1BQ86YN6 1023 aaKnown RBP16.32■□□□□ 0.2
SMARCA2-265ENST00000638139 SCRIBQ14160 1630 aa16.29■□□□□ 0.2
SMARCA2-265ENST00000638139 RSF1Q96T23 1441 aaPredicted RBP16.27■□□□□ 0.2
SMARCA2-265ENST00000638139 TRIM26Q12899 539 aaPredicted RBP16.21■□□□□ 0.19
SMARCA2-265ENST00000638139 RB1CC1Q8TDY2 1594 aa16.14■□□□□ 0.17
SMARCA2-265ENST00000638139 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
SMARCA2-265ENST00000638139 FAM9AQ8IZU1 332 aaPredicted RBP15.99■□□□□ 0.15
SMARCA2-265ENST00000638139 NACADO15069 1562 aa15.99■□□□□ 0.15
SMARCA2-265ENST00000638139 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
SMARCA2-265ENST00000638139 MROH2BQ7Z745 1585 aa15.94■□□□□ 0.14
SMARCA2-265ENST00000638139 ZEB1P37275 1124 aaPredicted RBP15.92■□□□□ 0.14
SMARCA2-265ENST00000638139 WIZO95785 1651 aa15.88■□□□□ 0.13
SMARCA2-265ENST00000638139 EHMT2Q96KQ7 1210 aa15.84■□□□□ 0.13
SMARCA2-265ENST00000638139 BAZ1AQ9NRL2 1556 aaPredicted RBP15.79■□□□□ 0.12
SMARCA2-265ENST00000638139 EIF4G1Q04637 1599 aaKnown RBP15.75■□□□□ 0.11
SMARCA2-265ENST00000638139 TOP2AP11388 1531 aaKnown RBP15.62■□□□□ 0.09
SMARCA2-265ENST00000638139 SMARCA4P51532 1647 aa15.58■□□□□ 0.08
SMARCA2-265ENST00000638139 ABCC8Q09428 1581 aa15.58■□□□□ 0.08
SMARCA2-265ENST00000638139 CCDC88BA6NC98 1476 aa15.56■□□□□ 0.08
SMARCA2-265ENST00000638139 SMARCA2P51531 1590 aa15.55■□□□□ 0.08
SMARCA2-265ENST00000638139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.53■□□□□ 0.08
SMARCA2-265ENST00000638139 UNC13AQ9UPW8 1703 aa15.53■□□□□ 0.08
SMARCA2-265ENST00000638139 SCAF1Q9H7N4 1312 aaKnown RBP15.5■□□□□ 0.07
SMARCA2-265ENST00000638139 WRNQ14191 1432 aaPredicted RBP eCLIP15.5■□□□□ 0.07
SMARCA2-265ENST00000638139 CCER1Q8TC90 406 aaPredicted RBP15.49■□□□□ 0.07
SMARCA2-265ENST00000638139 CEP162Q5TB80 1403 aa15.46■□□□□ 0.07
SMARCA2-265ENST00000638139 SOGA1O94964 1423 aa15.46■□□□□ 0.06
SMARCA2-265ENST00000638139 TNIKQ9UKE5 1360 aa15.42■□□□□ 0.06
SMARCA2-265ENST00000638139 EEA1Q15075 1411 aa15.39■□□□□ 0.05
SMARCA2-265ENST00000638139 RUSC2Q8N2Y8 1516 aa15.38■□□□□ 0.05
SMARCA2-265ENST00000638139 TTBK1Q5TCY1 1321 aaPredicted RBP15.38■□□□□ 0.05
SMARCA2-265ENST00000638139 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
SMARCA2-265ENST00000638139 PELP1Q8IZL8 1130 aaKnown RBP15.34■□□□□ 0.05
SMARCA2-265ENST00000638139 UBTFP17480 764 aaKnown RBP15.31■□□□□ 0.04
SMARCA2-265ENST00000638139 GOLGA3Q08378 1498 aa15.31■□□□□ 0.04
SMARCA2-265ENST00000638139 DIEXFQ68CQ4 756 aaKnown RBP15.29■□□□□ 0.04
SMARCA2-265ENST00000638139 BICRAQ9NZM4 1560 aa15.29■□□□□ 0.04
SMARCA2-265ENST00000638139 ACIN1Q9UKV3 1341 aaKnown RBP15.29■□□□□ 0.04
SMARCA2-265ENST00000638139 PEG3Q9GZU2 1588 aa15.26■□□□□ 0.03
SMARCA2-265ENST00000638139 NEUROD1Q13562 356 aa15.25■□□□□ 0.03
SMARCA2-265ENST00000638139 PABPN1Q86U42 306 aaKnown RBP eCLIP15.24■□□□□ 0.03
SMARCA2-265ENST00000638139 SYNJ1O43426 1573 aa15.22■□□□□ 0.03
SMARCA2-265ENST00000638139 KIF21BO75037 1637 aa15.21■□□□□ 0.02
SMARCA2-265ENST00000638139 CEP164Q9UPV0 1460 aa15.19■□□□□ 0.02
SMARCA2-265ENST00000638139 CENPBP07199 599 aaPredicted RBP15.15■□□□□ 0.02
SMARCA2-265ENST00000638139 ZNF316A6NFI3 1004 aaPredicted RBP15.14■□□□□ 0.01
SMARCA2-265ENST00000638139 CLIP1P30622 1438 aa15.13■□□□□ 0.01
SMARCA2-265ENST00000638139 ATAD2BQ9ULI0 1458 aa15.12■□□□□ 0.01
SMARCA2-265ENST00000638139 GTF3C3Q9Y5Q9 886 aa15.11■□□□□ 0.01
SMARCA2-265ENST00000638139 VPS8Q8N3P4 1428 aa15.09■□□□□ 0.01
SMARCA2-265ENST00000638139 BAZ1BQ9UIG0 1483 aaKnown RBP15.09■□□□□ 0.01
SMARCA2-265ENST00000638139 HNRNPUL2Q1KMD3 747 aaKnown RBP15.09■□□□□ 0.01
SMARCA2-265ENST00000638139 RAPGEF2Q9Y4G8 1499 aa15.07■□□□□ 0
SMARCA2-265ENST00000638139 TOP2BQ02880 1626 aa15.02□□□□□ -0.01
SMARCA2-265ENST00000638139 APLP2Q06481 763 aa15□□□□□ -0.01
SMARCA2-265ENST00000638139 BIVM-ERCC5R4GMW8 1640 aa14.97□□□□□ -0.01
SMARCA2-265ENST00000638139 RANGAP1P46060 587 aaPredicted RBP14.96□□□□□ -0.01
SMARCA2-265ENST00000638139 MIER1Q8N108 512 aa14.95□□□□□ -0.02
SMARCA2-265ENST00000638139 YTHDC1Q96MU7 727 aaKnown RBP14.93□□□□□ -0.02
SMARCA2-265ENST00000638139 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
SMARCA2-265ENST00000638139 PRXQ9BXM0 1461 aa14.9□□□□□ -0.02
SMARCA2-265ENST00000638139 ARAP1Q96P48 1450 aa14.89□□□□□ -0.03
SMARCA2-265ENST00000638139 DHX57Q6P158 1386 aaKnown RBP14.83□□□□□ -0.03
SMARCA2-265ENST00000638139 CUX1P39880 1505 aa14.83□□□□□ -0.04
SMARCA2-265ENST00000638139 CLSPNQ9HAW4 1339 aa14.83□□□□□ -0.04
SMARCA2-265ENST00000638139 KANK4Q5T7N3 995 aaPredicted RBP14.82□□□□□ -0.04
SMARCA2-265ENST00000638139 HMGXB3Q12766 1538 aa14.81□□□□□ -0.04
SMARCA2-265ENST00000638139 NCAPD3P42695 1498 aa14.79□□□□□ -0.04
SMARCA2-265ENST00000638139 KIF27Q86VH2 1401 aa14.78□□□□□ -0.04
SMARCA2-265ENST00000638139 RRBP1Q9P2E9 1410 aaKnown RBP14.77□□□□□ -0.04
SMARCA2-265ENST00000638139 ARHGAP35Q9NRY4 1499 aa14.73□□□□□ -0.05
SMARCA2-265ENST00000638139 CFTRP13569 1480 aa14.72□□□□□ -0.05
SMARCA2-265ENST00000638139 CUX2O14529 1486 aa14.72□□□□□ -0.05
SMARCA2-265ENST00000638139 CCNB3Q8WWL7 1395 aa14.69□□□□□ -0.06
SMARCA2-265ENST00000638139 PRDM2Q13029 1718 aa14.67□□□□□ -0.06
SMARCA2-265ENST00000638139 ITGAEP38570 1179 aa14.61□□□□□ -0.07
SMARCA2-265ENST00000638139 IGF1RP08069 1367 aa14.61□□□□□ -0.07
SMARCA2-265ENST00000638139 TIAM1Q13009 1591 aa14.6□□□□□ -0.07
SMARCA2-265ENST00000638139 MYT1Q01538 1121 aa14.59□□□□□ -0.07
SMARCA2-265ENST00000638139 MAP3K1Q13233 1512 aa14.59□□□□□ -0.07
SMARCA2-265ENST00000638139 RAB3GAP2Q9H2M9 1393 aa14.58□□□□□ -0.08
SMARCA2-265ENST00000638139 MAPKBP1O60336 1514 aa14.57□□□□□ -0.08
SMARCA2-265ENST00000638139 CARMIL1Q5VZK9 1371 aa14.55□□□□□ -0.08
SMARCA2-265ENST00000638139 LRRC9Q6ZRR7 1453 aa14.54□□□□□ -0.08
SMARCA2-265ENST00000638139 FGD5Q6ZNL6 1462 aa14.53□□□□□ -0.08
SMARCA2-265ENST00000638139 SUPT16HQ9Y5B9 1047 aaKnown RBP14.53□□□□□ -0.08
SMARCA2-265ENST00000638139 SETD5Q9C0A6 1442 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms