RNA–Protein interactions for RNA: ENST00000637083.1

CLN8-212, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN8, Length 2,001 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-212ENST00000637083 NISCHQ9Y2I1 1504 aa25.86■■□□□ 1.73
CLN8-212ENST00000637083 CCDC180Q9P1Z9 1646 aa22.27■■□□□ 1.15
CLN8-212ENST00000637083 ZCCHC6Q5VYS8 1495 aaKnown RBP21.83■■□□□ 1.09
CLN8-212ENST00000637083 SHROOM4Q9ULL8 1493 aa21.53■■□□□ 1.04
CLN8-212ENST00000637083 DCAF1Q9Y4B6 1507 aa21.4■■□□□ 1.02
CLN8-212ENST00000637083 DCAF8L2P0C7V8 631 aa21.39■■□□□ 1.02
CLN8-212ENST00000637083 SUPT5HO00267 1087 aaKnown RBP21.05■□□□□ 0.96
CLN8-212ENST00000637083 MYO15BQ96JP2 1530 aa20.92■□□□□ 0.94
CLN8-212ENST00000637083 ABCC9O60706 1549 aa20.7■□□□□ 0.9
CLN8-212ENST00000637083 NACADO15069 1562 aa20.63■□□□□ 0.89
CLN8-212ENST00000637083 SCRIBQ14160 1630 aa20.55■□□□□ 0.88
CLN8-212ENST00000637083 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
CLN8-212ENST00000637083 RB1CC1Q8TDY2 1594 aa20.32■□□□□ 0.84
CLN8-212ENST00000637083 RSF1Q96T23 1441 aaPredicted RBP20.29■□□□□ 0.84
CLN8-212ENST00000637083 CECR2Q9BXF3 1484 aa20.07■□□□□ 0.8
CLN8-212ENST00000637083 MROH2BQ7Z745 1585 aa19.98■□□□□ 0.79
CLN8-212ENST00000637083 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
CLN8-212ENST00000637083 WIZO95785 1651 aa19.84■□□□□ 0.77
CLN8-212ENST00000637083 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.77
CLN8-212ENST00000637083 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
CLN8-212ENST00000637083 PABPN1Q86U42 306 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLN8-212ENST00000637083 SMARCA4P51532 1647 aa19.75■□□□□ 0.75
CLN8-212ENST00000637083 TOP2AP11388 1531 aaKnown RBP19.68■□□□□ 0.74
CLN8-212ENST00000637083 BICRAQ9NZM4 1560 aa19.67■□□□□ 0.74
CLN8-212ENST00000637083 LOC105371045A0A1W2PR82 267 aa19.66■□□□□ 0.74
CLN8-212ENST00000637083 EIF4G1Q04637 1599 aaKnown RBP19.53■□□□□ 0.72
CLN8-212ENST00000637083 SMARCA2P51531 1590 aa19.5■□□□□ 0.71
CLN8-212ENST00000637083 CCDC88BA6NC98 1476 aa19.49■□□□□ 0.71
CLN8-212ENST00000637083 PEG3Q9GZU2 1588 aa19.48■□□□□ 0.71
CLN8-212ENST00000637083 PCGF6Q9BYE7 350 aa19.44■□□□□ 0.7
CLN8-212ENST00000637083 FAM9AQ8IZU1 332 aaPredicted RBP19.4■□□□□ 0.7
CLN8-212ENST00000637083 HRCP23327 699 aa19.37■□□□□ 0.69
CLN8-212ENST00000637083 TRIM26Q12899 539 aaPredicted RBP19.33■□□□□ 0.68
CLN8-212ENST00000637083 ATAD2BQ9ULI0 1458 aa19.29■□□□□ 0.68
CLN8-212ENST00000637083 ABCC8Q09428 1581 aa19.25■□□□□ 0.67
CLN8-212ENST00000637083 BAZ1BQ9UIG0 1483 aaKnown RBP19.23■□□□□ 0.67
CLN8-212ENST00000637083 EEA1Q15075 1411 aa19.2■□□□□ 0.66
CLN8-212ENST00000637083 EHMT2Q96KQ7 1210 aa19.15■□□□□ 0.66
CLN8-212ENST00000637083 WRNQ14191 1432 aaPredicted RBP eCLIP19.11■□□□□ 0.65
CLN8-212ENST00000637083 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
CLN8-212ENST00000637083 NCAPD3P42695 1498 aa19.04■□□□□ 0.64
CLN8-212ENST00000637083 SOGA1O94964 1423 aa19.02■□□□□ 0.64
CLN8-212ENST00000637083 CSRNP3Q8WYN3 585 aa19.02■□□□□ 0.64
CLN8-212ENST00000637083 TNIKQ9UKE5 1360 aa18.99■□□□□ 0.63
CLN8-212ENST00000637083 SYNJ1O43426 1573 aa18.95■□□□□ 0.62
CLN8-212ENST00000637083 ZEB1P37275 1124 aaPredicted RBP18.94■□□□□ 0.62
CLN8-212ENST00000637083 GOLGA3Q08378 1498 aa18.93■□□□□ 0.62
CLN8-212ENST00000637083 CEP162Q5TB80 1403 aa18.9■□□□□ 0.62
CLN8-212ENST00000637083 RUSC2Q8N2Y8 1516 aa18.89■□□□□ 0.61
CLN8-212ENST00000637083 CEP164Q9UPV0 1460 aa18.87■□□□□ 0.61
CLN8-212ENST00000637083 UBTFP17480 764 aaKnown RBP18.86■□□□□ 0.61
CLN8-212ENST00000637083 TOP2BQ02880 1626 aa18.86■□□□□ 0.61
CLN8-212ENST00000637083 KIF21BO75037 1637 aa18.85■□□□□ 0.61
CLN8-212ENST00000637083 BIVM-ERCC5R4GMW8 1640 aa18.82■□□□□ 0.6
CLN8-212ENST00000637083 DNAJC5BQ9UF47 199 aa18.8■□□□□ 0.6
CLN8-212ENST00000637083 CFTRP13569 1480 aa18.77■□□□□ 0.6
CLN8-212ENST00000637083 PPARGC1BQ86YN6 1023 aaKnown RBP18.74■□□□□ 0.59
CLN8-212ENST00000637083 PRDM2Q13029 1718 aa18.68■□□□□ 0.58
CLN8-212ENST00000637083 CC2D2AQ9P2K1 1620 aa18.64■□□□□ 0.58
CLN8-212ENST00000637083 CLIP1P30622 1438 aa18.64■□□□□ 0.57
CLN8-212ENST00000637083 CUX1P39880 1505 aa18.64■□□□□ 0.57
CLN8-212ENST00000637083 ERICH3Q5RHP9 1530 aa18.64■□□□□ 0.57
CLN8-212ENST00000637083 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
CLN8-212ENST00000637083 RAPGEF2Q9Y4G8 1499 aa18.61■□□□□ 0.57
CLN8-212ENST00000637083 KIF27Q86VH2 1401 aa18.6■□□□□ 0.57
CLN8-212ENST00000637083 PRXQ9BXM0 1461 aa18.58■□□□□ 0.56
CLN8-212ENST00000637083 VPS8Q8N3P4 1428 aa18.56■□□□□ 0.56
CLN8-212ENST00000637083 APLP2Q06481 763 aa18.51■□□□□ 0.55
CLN8-212ENST00000637083 CCER1Q8TC90 406 aaPredicted RBP18.47■□□□□ 0.55
CLN8-212ENST00000637083 TTBK1Q5TCY1 1321 aaPredicted RBP18.44■□□□□ 0.54
CLN8-212ENST00000637083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.41■□□□□ 0.54
CLN8-212ENST00000637083 RANGAP1P46060 587 aaPredicted RBP18.39■□□□□ 0.53
CLN8-212ENST00000637083 FANCD2Q9BXW9 1451 aa18.39■□□□□ 0.53
CLN8-212ENST00000637083 CUX2O14529 1486 aa18.39■□□□□ 0.53
CLN8-212ENST00000637083 FGD5Q6ZNL6 1462 aa18.37■□□□□ 0.53
CLN8-212ENST00000637083 IGF1RP08069 1367 aa18.35■□□□□ 0.53
CLN8-212ENST00000637083 NESP48681 1621 aa18.33■□□□□ 0.52
CLN8-212ENST00000637083 ARAP1Q96P48 1450 aa18.33■□□□□ 0.52
CLN8-212ENST00000637083 DNMBPQ6XZF7 1577 aa18.32■□□□□ 0.52
CLN8-212ENST00000637083 LAMC3Q9Y6N6 1575 aa18.29■□□□□ 0.52
CLN8-212ENST00000637083 CARMIL1Q5VZK9 1371 aa18.28■□□□□ 0.52
CLN8-212ENST00000637083 TOPBP1Q92547 1522 aa18.24■□□□□ 0.51
CLN8-212ENST00000637083 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
CLN8-212ENST00000637083 ARHGAP35Q9NRY4 1499 aa18.23■□□□□ 0.51
CLN8-212ENST00000637083 POLA1P09884 1462 aaPredicted RBP18.19■□□□□ 0.5
CLN8-212ENST00000637083 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
CLN8-212ENST00000637083 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
CLN8-212ENST00000637083 PDS5BQ9NTI5 1447 aa18.18■□□□□ 0.5
CLN8-212ENST00000637083 CUL7Q14999 1698 aa18.15■□□□□ 0.5
CLN8-212ENST00000637083 MAP3K1Q13233 1512 aa18.15■□□□□ 0.5
CLN8-212ENST00000637083 URB2Q14146 1524 aaKnown RBP18.13■□□□□ 0.49
CLN8-212ENST00000637083 FHAD1B1AJZ9 1412 aa18.11■□□□□ 0.49
CLN8-212ENST00000637083 KANK4Q5T7N3 995 aaPredicted RBP18.1■□□□□ 0.49
CLN8-212ENST00000637083 RRBP1Q9P2E9 1410 aaKnown RBP18.09■□□□□ 0.49
CLN8-212ENST00000637083 EFCAB5A4FU69 1503 aa18.07■□□□□ 0.48
CLN8-212ENST00000637083 WDR97A6NE52 1622 aa18.07■□□□□ 0.48
CLN8-212ENST00000637083 CLSPNQ9HAW4 1339 aa18.05■□□□□ 0.48
CLN8-212ENST00000637083 TIAM1Q13009 1591 aa18.04■□□□□ 0.48
CLN8-212ENST00000637083 TDRD9Q8NDG6 1382 aaKnown RBP18.03■□□□□ 0.48
CLN8-212ENST00000637083 CCNB3Q8WWL7 1395 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms