RNA–Protein interactions for RNA: ENST00000633552.1

GPCPD1-207, Transcript of glycerophosphocholine phosphodiesterase 1, humanhuman

TSL 5

Gene GPCPD1, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPCPD1-207ENST00000633552 AEBP2Q6ZN18 517 aaPredicted RBP22.21■■□□□ 1.15
GPCPD1-207ENST00000633552 CHIC1Q5VXU3 224 aa20.94■□□□□ 0.94
GPCPD1-207ENST00000633552 SENP3Q9H4L4 574 aaPredicted RBP19.16■□□□□ 0.66
GPCPD1-207ENST00000633552 PHF23Q9BUL5 403 aaPredicted RBP18.8■□□□□ 0.6
GPCPD1-207ENST00000633552 FOXD1Q16676 465 aa17.79■□□□□ 0.44
GPCPD1-207ENST00000633552 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
GPCPD1-207ENST00000633552 MSH5O43196 834 aa16.88■□□□□ 0.29
GPCPD1-207ENST00000633552 PLPPR3Q6T4P5 718 aa16.69■□□□□ 0.26
GPCPD1-207ENST00000633552 PIAS4Q8N2W9 510 aaPredicted RBP16.62■□□□□ 0.25
GPCPD1-207ENST00000633552 PPP6R1Q9UPN7 881 aa16.35■□□□□ 0.21
GPCPD1-207ENST00000633552 ADRA2BP18089 450 aa16.32■□□□□ 0.2
GPCPD1-207ENST00000633552 SCAF1Q9H7N4 1312 aaKnown RBP15.12■□□□□ 0.01
GPCPD1-207ENST00000633552 DMRT2Q9Y5R5 561 aa15.1■□□□□ 0.01
GPCPD1-207ENST00000633552 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
GPCPD1-207ENST00000633552 PPP4R3CPQ6ZMV5 832 aa14.74□□□□□ -0.05
GPCPD1-207ENST00000633552 KCNA4P22459 653 aa14.71□□□□□ -0.05
GPCPD1-207ENST00000633552 CACNB1Q02641 598 aaPredicted RBP14.65□□□□□ -0.06
GPCPD1-207ENST00000633552 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
GPCPD1-207ENST00000633552 NCBP3Q53F19 620 aaKnown RBP14.47□□□□□ -0.09
GPCPD1-207ENST00000633552 HOXD11P31277 338 aaPredicted RBP14.42□□□□□ -0.1
GPCPD1-207ENST00000633552 CNKSR2Q8WXI2 1034 aa14.33□□□□□ -0.12
GPCPD1-207ENST00000633552 RNF39Q9H2S5 420 aa14.3□□□□□ -0.12
GPCPD1-207ENST00000633552 RNF216Q9NWF9 866 aaPredicted RBP14.27□□□□□ -0.13
GPCPD1-207ENST00000633552 NPM3O75607 178 aaKnown RBP14.2□□□□□ -0.14
GPCPD1-207ENST00000633552 C1QBPQ07021 282 aaKnown RBP14.15□□□□□ -0.14
GPCPD1-207ENST00000633552 EHMT2Q96KQ7 1210 aa14.1□□□□□ -0.15
GPCPD1-207ENST00000633552 SLC4A1APQ9BWU0 796 aaKnown RBP14.1□□□□□ -0.15
GPCPD1-207ENST00000633552 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
GPCPD1-207ENST00000633552 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.81□□□□□ -0.2
GPCPD1-207ENST00000633552 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
GPCPD1-207ENST00000633552 ZBTB22O15209 634 aa13.49□□□□□ -0.25
GPCPD1-207ENST00000633552 FOXD4L1Q9NU39 408 aa13.47□□□□□ -0.25
GPCPD1-207ENST00000633552 U3KPZ7 1027 aaPredicted RBP13.38□□□□□ -0.27
GPCPD1-207ENST00000633552 CAPN15O75808 1086 aa13.35□□□□□ -0.27
GPCPD1-207ENST00000633552 POTEHQ6S545 545 aa13.34□□□□□ -0.27
GPCPD1-207ENST00000633552 SLC4A2P04920 1241 aa13.3□□□□□ -0.28
GPCPD1-207ENST00000633552 DSG3P32926 999 aa13.28□□□□□ -0.28
GPCPD1-207ENST00000633552 SPINK5Q9NQ38 1064 aaPredicted RBP13.27□□□□□ -0.29
GPCPD1-207ENST00000633552 APLP2Q06481 763 aa13.19□□□□□ -0.3
GPCPD1-207ENST00000633552 MYCNP04198 464 aaPredicted RBP13.16□□□□□ -0.3
GPCPD1-207ENST00000633552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.08□□□□□ -0.32
GPCPD1-207ENST00000633552 HNRNPUL2Q1KMD3 747 aaKnown RBP13.08□□□□□ -0.32
GPCPD1-207ENST00000633552 ZNF219Q9P2Y4 722 aaPredicted RBP13.07□□□□□ -0.32
GPCPD1-207ENST00000633552 TRHP20396 242 aaPredicted RBP13.06□□□□□ -0.32
GPCPD1-207ENST00000633552 ABCB7O75027 752 aa12.96□□□□□ -0.33
GPCPD1-207ENST00000633552 SAMD1Q6SPF0 538 aaPredicted RBP12.95□□□□□ -0.34
GPCPD1-207ENST00000633552 ATXN8OSP0DMR3 200 aa12.91□□□□□ -0.34
GPCPD1-207ENST00000633552 RBM42Q9BTD8 480 aaKnown RBP12.81□□□□□ -0.36
GPCPD1-207ENST00000633552 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
GPCPD1-207ENST00000633552 POLA2Q14181 598 aa12.62□□□□□ -0.39
GPCPD1-207ENST00000633552 CHRDL2Q6WN34 429 aa12.57□□□□□ -0.4
GPCPD1-207ENST00000633552 ZBTB12Q9Y330 459 aaPredicted RBP12.46□□□□□ -0.41
GPCPD1-207ENST00000633552 FKBP8Q14318 412 aa12.43□□□□□ -0.42
GPCPD1-207ENST00000633552 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
GPCPD1-207ENST00000633552 FBLN2P98095 1184 aa12.29□□□□□ -0.44
GPCPD1-207ENST00000633552 SP7Q8TDD2 431 aaPredicted RBP12.28□□□□□ -0.44
GPCPD1-207ENST00000633552 REM2Q8IYK8 340 aaPredicted RBP12.24□□□□□ -0.45
GPCPD1-207ENST00000633552 OSCARQ8IYS5 282 aa12.2□□□□□ -0.46
GPCPD1-207ENST00000633552 MKRN4PQ13434 485 aaPredicted RBP12.18□□□□□ -0.46
GPCPD1-207ENST00000633552 PIP4P2Q8N4L2 257 aa12.17□□□□□ -0.46
GPCPD1-207ENST00000633552 SPDYE4A6NLX3 237 aa12.12□□□□□ -0.47
GPCPD1-207ENST00000633552 HAX1O00165 279 aa12.1□□□□□ -0.47
GPCPD1-207ENST00000633552 PITPNM1O00562 1244 aa12.09□□□□□ -0.47
GPCPD1-207ENST00000633552 FXR2P51116 673 aaKnown RBP eCLIP12.05□□□□□ -0.48
GPCPD1-207ENST00000633552 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
GPCPD1-207ENST00000633552 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
GPCPD1-207ENST00000633552 SPDYE2Q495Y8 402 aa11.99□□□□□ -0.49
GPCPD1-207ENST00000633552 FBXO3Q9UK99 471 aa11.9□□□□□ -0.5
GPCPD1-207ENST00000633552 ZNF692Q9BU19 519 aaPredicted RBP11.89□□□□□ -0.51
GPCPD1-207ENST00000633552 SPDYE1Q8NFV5 336 aaPredicted RBP11.87□□□□□ -0.51
GPCPD1-207ENST00000633552 EVX2Q03828 476 aa11.85□□□□□ -0.51
GPCPD1-207ENST00000633552 CLEC11AQ9Y240 323 aa11.84□□□□□ -0.51
GPCPD1-207ENST00000633552 PRKAR2AP13861 404 aaKnown RBP11.81□□□□□ -0.52
GPCPD1-207ENST00000633552 PROM2Q8N271 834 aa11.81□□□□□ -0.52
GPCPD1-207ENST00000633552 AMER1Q5JTC6 1135 aaPredicted RBP11.79□□□□□ -0.52
GPCPD1-207ENST00000633552 RTN4Q9NQC3 1192 aaKnown RBP11.75□□□□□ -0.53
GPCPD1-207ENST00000633552 PABPN1Q86U42 306 aaKnown RBP eCLIP11.73□□□□□ -0.53
GPCPD1-207ENST00000633552 SSUH2Q9Y2M2 353 aa11.73□□□□□ -0.53
GPCPD1-207ENST00000633552 VASPP50552 380 aaPredicted RBP11.71□□□□□ -0.53
GPCPD1-207ENST00000633552 C19orf67A6NJJ6 358 aa11.68□□□□□ -0.54
GPCPD1-207ENST00000633552 PRR29P0C7W0 189 aa11.62□□□□□ -0.55
GPCPD1-207ENST00000633552 GABBR2O75899 941 aa11.58□□□□□ -0.56
GPCPD1-207ENST00000633552 STAG3Q9UJ98 1225 aa11.58□□□□□ -0.56
GPCPD1-207ENST00000633552 CHADLQ6NUI6 762 aa11.56□□□□□ -0.56
GPCPD1-207ENST00000633552 PLCD3Q8N3E9 789 aa11.55□□□□□ -0.56
GPCPD1-207ENST00000633552 KLHL34Q8N239 644 aa11.54□□□□□ -0.56
GPCPD1-207ENST00000633552 IFNLR1Q8IU57 520 aaPredicted RBP11.52□□□□□ -0.57
GPCPD1-207ENST00000633552 LHX8Q68G74 356 aa11.51□□□□□ -0.57
GPCPD1-207ENST00000633552 MIER1Q8N108 512 aa11.5□□□□□ -0.57
GPCPD1-207ENST00000633552 PLEKHG5O94827 1062 aa11.48□□□□□ -0.57
GPCPD1-207ENST00000633552 CLCN6P51797 869 aa11.46□□□□□ -0.57
GPCPD1-207ENST00000633552 CD44P16070 742 aaKnown RBP11.43□□□□□ -0.58
GPCPD1-207ENST00000633552 FARP1Q9Y4F1 1045 aaPredicted RBP11.41□□□□□ -0.58
GPCPD1-207ENST00000633552 SPOCK2Q92563 424 aa11.4□□□□□ -0.58
GPCPD1-207ENST00000633552 ZBTB47Q9UFB7 747 aaPredicted RBP11.36□□□□□ -0.59
GPCPD1-207ENST00000633552 DCAF8L2P0C7V8 631 aa11.33□□□□□ -0.6
GPCPD1-207ENST00000633552 POTEIP0CG38 1075 aa11.31□□□□□ -0.6
GPCPD1-207ENST00000633552 DCBLD2Q96PD2 775 aa11.3□□□□□ -0.6
GPCPD1-207ENST00000633552 CIZ1Q9ULV3 898 aaPredicted RBP11.25□□□□□ -0.61
GPCPD1-207ENST00000633552 PKD2Q13563 968 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms