RNA–Protein interactions for RNA: ENST00000622697.4

GABRB3-215, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 5 BASIC

Gene GABRB3, Length 5,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-215ENST00000622697 DCAF8L2P0C7V8 631 aa28.21■■■□□ 2.11
GABRB3-215ENST00000622697 NISCHQ9Y2I1 1504 aa27.84■■■□□ 2.05
GABRB3-215ENST00000622697 SUPT5HO00267 1087 aaKnown RBP27.28■■□□□ 1.96
GABRB3-215ENST00000622697 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
GABRB3-215ENST00000622697 EHMT2Q96KQ7 1210 aa26.36■■□□□ 1.81
GABRB3-215ENST00000622697 FAM9AQ8IZU1 332 aaPredicted RBP25.7■■□□□ 1.7
GABRB3-215ENST00000622697 PCGF6Q9BYE7 350 aa25.68■■□□□ 1.7
GABRB3-215ENST00000622697 TTBK1Q5TCY1 1321 aaPredicted RBP25.45■■□□□ 1.67
GABRB3-215ENST00000622697 APLP2Q06481 763 aa25.17■■□□□ 1.62
GABRB3-215ENST00000622697 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
GABRB3-215ENST00000622697 RANGAP1P46060 587 aaPredicted RBP25.02■■□□□ 1.6
GABRB3-215ENST00000622697 CCER1Q8TC90 406 aaPredicted RBP24.84■■□□□ 1.57
GABRB3-215ENST00000622697 PPARGC1BQ86YN6 1023 aaKnown RBP24.81■■□□□ 1.56
GABRB3-215ENST00000622697 PELP1Q8IZL8 1130 aaKnown RBP24.77■■□□□ 1.56
GABRB3-215ENST00000622697 ZEB1P37275 1124 aaPredicted RBP24.73■■□□□ 1.55
GABRB3-215ENST00000622697 UBTFP17480 764 aaKnown RBP24.66■■□□□ 1.54
GABRB3-215ENST00000622697 LOC105371045A0A1W2PR82 267 aa24.64■■□□□ 1.54
GABRB3-215ENST00000622697 CHIC1Q5VXU3 224 aa24.57■■□□□ 1.52
GABRB3-215ENST00000622697 CENPBP07199 599 aaPredicted RBP24.54■■□□□ 1.52
GABRB3-215ENST00000622697 HRCP23327 699 aa24.5■■□□□ 1.51
GABRB3-215ENST00000622697 ATP1B4Q9UN42 357 aaPredicted RBP24.49■■□□□ 1.51
GABRB3-215ENST00000622697 TRIM26Q12899 539 aaPredicted RBP24.47■■□□□ 1.51
GABRB3-215ENST00000622697 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
GABRB3-215ENST00000622697 ITGAEP38570 1179 aa23.99■■□□□ 1.43
GABRB3-215ENST00000622697 HNRNPUL2Q1KMD3 747 aaKnown RBP23.98■■□□□ 1.43
GABRB3-215ENST00000622697 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.93■■□□□ 1.42
GABRB3-215ENST00000622697 ERICH6Q7L0X2 663 aa23.9■■□□□ 1.42
GABRB3-215ENST00000622697 NEFLP07196 543 aa23.8■■□□□ 1.4
GABRB3-215ENST00000622697 ABCC9O60706 1549 aa23.63■■□□□ 1.37
GABRB3-215ENST00000622697 DIEXFQ68CQ4 756 aaKnown RBP23.61■■□□□ 1.37
GABRB3-215ENST00000622697 PABPN1Q86U42 306 aaKnown RBP eCLIP23.59■■□□□ 1.37
GABRB3-215ENST00000622697 POLR3GLQ9BT43 218 aa23.5■■□□□ 1.35
GABRB3-215ENST00000622697 CNGB1Q14028 1251 aaPredicted RBP23.5■■□□□ 1.35
GABRB3-215ENST00000622697 FAM50AQ14320 339 aaKnown RBP23.3■■□□□ 1.32
GABRB3-215ENST00000622697 MYT1Q01538 1121 aa23.26■■□□□ 1.31
GABRB3-215ENST00000622697 GTF3C3Q9Y5Q9 886 aa23.25■■□□□ 1.31
GABRB3-215ENST00000622697 NEUROD1Q13562 356 aa23.22■■□□□ 1.31
GABRB3-215ENST00000622697 MYT1LQ9UL68 1186 aa23.15■■□□□ 1.3
GABRB3-215ENST00000622697 ZCCHC6Q5VYS8 1495 aaKnown RBP23.13■■□□□ 1.29
GABRB3-215ENST00000622697 BCANQ96GW7 911 aa23.07■■□□□ 1.28
GABRB3-215ENST00000622697 ZNF316A6NFI3 1004 aaPredicted RBP23.06■■□□□ 1.28
GABRB3-215ENST00000622697 CSRNP3Q8WYN3 585 aa23.05■■□□□ 1.28
GABRB3-215ENST00000622697 TRIM52Q96A61 297 aa23.04■■□□□ 1.28
GABRB3-215ENST00000622697 SCRIBQ14160 1630 aa23.02■■□□□ 1.28
GABRB3-215ENST00000622697 P3H3Q8IVL6 736 aa22.96■■□□□ 1.27
GABRB3-215ENST00000622697 MYO15BQ96JP2 1530 aa22.94■■□□□ 1.26
GABRB3-215ENST00000622697 ACIN1Q9UKV3 1341 aaKnown RBP22.93■■□□□ 1.26
GABRB3-215ENST00000622697 DCAF1Q9Y4B6 1507 aa22.91■■□□□ 1.26
GABRB3-215ENST00000622697 DAXXQ9UER7 740 aaPredicted RBP22.87■■□□□ 1.25
GABRB3-215ENST00000622697 ZNF326Q5BKZ1 582 aaKnown RBP22.83■■□□□ 1.24
GABRB3-215ENST00000622697 ARID3CA6NKF2 412 aa22.81■■□□□ 1.24
GABRB3-215ENST00000622697 ANP32CO43423 234 aa22.8■■□□□ 1.24
GABRB3-215ENST00000622697 SLC4A1APQ9BWU0 796 aaKnown RBP22.79■■□□□ 1.24
GABRB3-215ENST00000622697 FBLN2P98095 1184 aa22.67■■□□□ 1.22
GABRB3-215ENST00000622697 CLSPNQ9HAW4 1339 aa22.57■■□□□ 1.2
GABRB3-215ENST00000622697 CCDC180Q9P1Z9 1646 aa22.56■■□□□ 1.2
GABRB3-215ENST00000622697 RTL5Q5HYW3 569 aaPredicted RBP22.53■■□□□ 1.2
GABRB3-215ENST00000622697 CDK11AQ9UQ88 783 aaPredicted RBP22.51■■□□□ 1.19
GABRB3-215ENST00000622697 SCAF1Q9H7N4 1312 aaKnown RBP22.51■■□□□ 1.19
GABRB3-215ENST00000622697 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
GABRB3-215ENST00000622697 DDX10Q13206 875 aaKnown RBP22.47■■□□□ 1.19
GABRB3-215ENST00000622697 ZNF777Q9ULD5 760 aaPredicted RBP22.47■■□□□ 1.19
GABRB3-215ENST00000622697 FKBP8Q14318 412 aa22.42■■□□□ 1.18
GABRB3-215ENST00000622697 MIER1Q8N108 512 aa22.42■■□□□ 1.18
GABRB3-215ENST00000622697 HIRIP3Q9BW71 556 aaPredicted RBP22.34■■□□□ 1.17
GABRB3-215ENST00000622697 TONSLQ96HA7 1378 aa22.34■■□□□ 1.17
GABRB3-215ENST00000622697 CHIC2Q9UKJ5 165 aa22.33■■□□□ 1.16
GABRB3-215ENST00000622697 CLIP1P30622 1438 aa22.3■■□□□ 1.16
GABRB3-215ENST00000622697 HNRNPUQ00839 825 aaKnown RBP eCLIP22.29■■□□□ 1.16
GABRB3-215ENST00000622697 CEP162Q5TB80 1403 aa22.27■■□□□ 1.16
GABRB3-215ENST00000622697 FAM9BQ8IZU0 186 aa22.25■■□□□ 1.15
GABRB3-215ENST00000622697 BCL11AQ9H165 835 aa22.19■■□□□ 1.14
GABRB3-215ENST00000622697 NPM2Q86SE8 214 aaKnown RBP22.16■■□□□ 1.14
GABRB3-215ENST00000622697 SALL2Q9Y467 1007 aaPredicted RBP22.15■■□□□ 1.14
GABRB3-215ENST00000622697 CANXP27824 592 aaKnown RBP22.13■■□□□ 1.13
GABRB3-215ENST00000622697 GOLGA3Q08378 1498 aa22.11■■□□□ 1.13
GABRB3-215ENST00000622697 IRX6P78412 446 aaPredicted RBP22.1■■□□□ 1.13
GABRB3-215ENST00000622697 ANP32AP39687 249 aaKnown RBP22.06■■□□□ 1.12
GABRB3-215ENST00000622697 CECR2Q9BXF3 1484 aa22.06■■□□□ 1.12
GABRB3-215ENST00000622697 WRNQ14191 1432 aaPredicted RBP eCLIP22.05■■□□□ 1.12
GABRB3-215ENST00000622697 MTUS2Q5JR59 1369 aa22.04■■□□□ 1.12
GABRB3-215ENST00000622697 RRP7BPQ9NSQ0 103 aa22.03■■□□□ 1.12
GABRB3-215ENST00000622697 TNIKQ9UKE5 1360 aa22.01■■□□□ 1.11
GABRB3-215ENST00000622697 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
GABRB3-215ENST00000622697 KDM2AQ9Y2K7 1162 aa21.99■■□□□ 1.11
GABRB3-215ENST00000622697 EEA1Q15075 1411 aa21.99■■□□□ 1.11
GABRB3-215ENST00000622697 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.98■■□□□ 1.11
GABRB3-215ENST00000622697 MRS2Q9HD23 443 aa21.98■■□□□ 1.11
GABRB3-215ENST00000622697 SENP3-EIF4A1A0A087X0R7 540 aa21.94■■□□□ 1.1
GABRB3-215ENST00000622697 TMC1Q8TDI8 760 aa21.94■■□□□ 1.1
GABRB3-215ENST00000622697 CHGAP10645 457 aaKnown RBP21.93■■□□□ 1.1
GABRB3-215ENST00000622697 SOGA1O94964 1423 aa21.92■■□□□ 1.1
GABRB3-215ENST00000622697 SLC24A1O60721 1099 aa21.91■■□□□ 1.1
GABRB3-215ENST00000622697 ZBTB47Q9UFB7 747 aaPredicted RBP21.9■■□□□ 1.1
GABRB3-215ENST00000622697 SIN3AQ96ST3 1273 aa21.88■■□□□ 1.09
GABRB3-215ENST00000622697 CCDC136Q96JN2 1154 aa21.88■■□□□ 1.09
GABRB3-215ENST00000622697 NACADO15069 1562 aa21.87■■□□□ 1.09
GABRB3-215ENST00000622697 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
GABRB3-215ENST00000622697 BAZ1BQ9UIG0 1483 aaKnown RBP21.85■■□□□ 1.09
GABRB3-215ENST00000622697 EIF4G2P78344 907 aaKnown RBP eCLIP21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms