RNA–Protein interactions for RNA: ENST00000618944.4

TP53-223, Transcript of tumor protein p53, humanhuman

TSL 1 (best) BASIC

Gene TP53, Length 2,404 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TP53-223ENST00000618944 NISCHQ9Y2I1 1504 aa23.33■■□□□ 1.33
TP53-223ENST00000618944 SHROOM4Q9ULL8 1493 aa20.02■□□□□ 0.8
TP53-223ENST00000618944 CCDC180Q9P1Z9 1646 aa19.73■□□□□ 0.75
TP53-223ENST00000618944 ZCCHC6Q5VYS8 1495 aaKnown RBP19.68■□□□□ 0.74
TP53-223ENST00000618944 DCAF8L2P0C7V8 631 aa19.65■□□□□ 0.74
TP53-223ENST00000618944 SUPT5HO00267 1087 aaKnown RBP19.63■□□□□ 0.73
TP53-223ENST00000618944 DCAF1Q9Y4B6 1507 aa19.05■□□□□ 0.64
TP53-223ENST00000618944 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
TP53-223ENST00000618944 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
TP53-223ENST00000618944 SCRIBQ14160 1630 aa18.64■□□□□ 0.57
TP53-223ENST00000618944 ABCC9O60706 1549 aa18.58■□□□□ 0.57
TP53-223ENST00000618944 RSF1Q96T23 1441 aaPredicted RBP18.49■□□□□ 0.55
TP53-223ENST00000618944 LOC105371045A0A1W2PR82 267 aa18.49■□□□□ 0.55
TP53-223ENST00000618944 PCGF6Q9BYE7 350 aa18.35■□□□□ 0.53
TP53-223ENST00000618944 NACADO15069 1562 aa18.35■□□□□ 0.53
TP53-223ENST00000618944 CECR2Q9BXF3 1484 aa18.28■□□□□ 0.52
TP53-223ENST00000618944 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
TP53-223ENST00000618944 HRCP23327 699 aa18.21■□□□□ 0.51
TP53-223ENST00000618944 RB1CC1Q8TDY2 1594 aa18.21■□□□□ 0.51
TP53-223ENST00000618944 FAM9AQ8IZU1 332 aaPredicted RBP18.17■□□□□ 0.5
TP53-223ENST00000618944 MROH2BQ7Z745 1585 aa18.17■□□□□ 0.5
TP53-223ENST00000618944 EHMT2Q96KQ7 1210 aa18.08■□□□□ 0.49
TP53-223ENST00000618944 WIZO95785 1651 aa18.04■□□□□ 0.48
TP53-223ENST00000618944 TRIM26Q12899 539 aaPredicted RBP17.96■□□□□ 0.46
TP53-223ENST00000618944 PPARGC1BQ86YN6 1023 aaKnown RBP17.94■□□□□ 0.46
TP53-223ENST00000618944 BAZ1AQ9NRL2 1556 aaPredicted RBP17.9■□□□□ 0.46
TP53-223ENST00000618944 PABPN1Q86U42 306 aaKnown RBP eCLIP17.87■□□□□ 0.45
TP53-223ENST00000618944 SMARCA4P51532 1647 aa17.74■□□□□ 0.43
TP53-223ENST00000618944 UNC13AQ9UPW8 1703 aa17.73■□□□□ 0.43
TP53-223ENST00000618944 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
TP53-223ENST00000618944 TOP2AP11388 1531 aaKnown RBP17.72■□□□□ 0.43
TP53-223ENST00000618944 EIF4G1Q04637 1599 aaKnown RBP17.66■□□□□ 0.42
TP53-223ENST00000618944 ABCC8Q09428 1581 aa17.65■□□□□ 0.42
TP53-223ENST00000618944 SMARCA2P51531 1590 aa17.63■□□□□ 0.41
TP53-223ENST00000618944 BICRAQ9NZM4 1560 aa17.6■□□□□ 0.41
TP53-223ENST00000618944 SOGA1O94964 1423 aa17.51■□□□□ 0.39
TP53-223ENST00000618944 ZEB1P37275 1124 aaPredicted RBP17.48■□□□□ 0.39
TP53-223ENST00000618944 TTBK1Q5TCY1 1321 aaPredicted RBP17.44■□□□□ 0.38
TP53-223ENST00000618944 CSRNP3Q8WYN3 585 aa17.44■□□□□ 0.38
TP53-223ENST00000618944 RUSC2Q8N2Y8 1516 aa17.43■□□□□ 0.38
TP53-223ENST00000618944 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
TP53-223ENST00000618944 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
TP53-223ENST00000618944 WRNQ14191 1432 aaPredicted RBP eCLIP17.36■□□□□ 0.37
TP53-223ENST00000618944 PEG3Q9GZU2 1588 aa17.36■□□□□ 0.37
TP53-223ENST00000618944 CEP162Q5TB80 1403 aa17.35■□□□□ 0.37
TP53-223ENST00000618944 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.33■□□□□ 0.36
TP53-223ENST00000618944 TNIKQ9UKE5 1360 aa17.33■□□□□ 0.36
TP53-223ENST00000618944 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
TP53-223ENST00000618944 EEA1Q15075 1411 aa17.3■□□□□ 0.36
TP53-223ENST00000618944 CCER1Q8TC90 406 aaPredicted RBP17.26■□□□□ 0.35
TP53-223ENST00000618944 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
TP53-223ENST00000618944 GOLGA3Q08378 1498 aa17.22■□□□□ 0.35
TP53-223ENST00000618944 RANGAP1P46060 587 aaPredicted RBP17.19■□□□□ 0.34
TP53-223ENST00000618944 CEP164Q9UPV0 1460 aa17.12■□□□□ 0.33
TP53-223ENST00000618944 CLIP1P30622 1438 aa17.06■□□□□ 0.32
TP53-223ENST00000618944 RAPGEF2Q9Y4G8 1499 aa17.06■□□□□ 0.32
TP53-223ENST00000618944 NCAPD3P42695 1498 aa17.04■□□□□ 0.32
TP53-223ENST00000618944 KIF21BO75037 1637 aa17.02■□□□□ 0.32
TP53-223ENST00000618944 HNRNPUL2Q1KMD3 747 aaKnown RBP17■□□□□ 0.31
TP53-223ENST00000618944 TOP2BQ02880 1626 aa16.99■□□□□ 0.31
TP53-223ENST00000618944 APLP2Q06481 763 aa16.99■□□□□ 0.31
TP53-223ENST00000618944 HMGXB3Q12766 1538 aa16.95■□□□□ 0.3
TP53-223ENST00000618944 VPS8Q8N3P4 1428 aa16.94■□□□□ 0.3
TP53-223ENST00000618944 CUX1P39880 1505 aa16.9■□□□□ 0.3
TP53-223ENST00000618944 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
TP53-223ENST00000618944 CFTRP13569 1480 aa16.88■□□□□ 0.29
TP53-223ENST00000618944 PRXQ9BXM0 1461 aa16.86■□□□□ 0.29
TP53-223ENST00000618944 DIEXFQ68CQ4 756 aaKnown RBP16.85■□□□□ 0.29
TP53-223ENST00000618944 KIF27Q86VH2 1401 aa16.84■□□□□ 0.29
TP53-223ENST00000618944 KANK4Q5T7N3 995 aaPredicted RBP16.79■□□□□ 0.28
TP53-223ENST00000618944 ERICH3Q5RHP9 1530 aa16.77■□□□□ 0.28
TP53-223ENST00000618944 ARAP1Q96P48 1450 aa16.76■□□□□ 0.27
TP53-223ENST00000618944 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
TP53-223ENST00000618944 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
TP53-223ENST00000618944 ZNF316A6NFI3 1004 aaPredicted RBP16.73■□□□□ 0.27
TP53-223ENST00000618944 CUX2O14529 1486 aa16.71■□□□□ 0.27
TP53-223ENST00000618944 IGF1RP08069 1367 aa16.7■□□□□ 0.26
TP53-223ENST00000618944 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
TP53-223ENST00000618944 CC2D2AQ9P2K1 1620 aa16.64■□□□□ 0.25
TP53-223ENST00000618944 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
TP53-223ENST00000618944 CARMIL1Q5VZK9 1371 aa16.63■□□□□ 0.25
TP53-223ENST00000618944 FGD5Q6ZNL6 1462 aa16.63■□□□□ 0.25
TP53-223ENST00000618944 ITGAEP38570 1179 aa16.62■□□□□ 0.25
TP53-223ENST00000618944 ACIN1Q9UKV3 1341 aaKnown RBP16.61■□□□□ 0.25
TP53-223ENST00000618944 P3H3Q8IVL6 736 aa16.6■□□□□ 0.25
TP53-223ENST00000618944 FANCD2Q9BXW9 1451 aa16.58■□□□□ 0.24
TP53-223ENST00000618944 ATP1B4Q9UN42 357 aaPredicted RBP16.55■□□□□ 0.24
TP53-223ENST00000618944 PRDM2Q13029 1718 aa16.54■□□□□ 0.24
TP53-223ENST00000618944 DHX57Q6P158 1386 aaKnown RBP16.53■□□□□ 0.24
TP53-223ENST00000618944 NESP48681 1621 aa16.53■□□□□ 0.24
TP53-223ENST00000618944 RAD54L2Q9Y4B4 1467 aa16.53■□□□□ 0.24
TP53-223ENST00000618944 CENPBP07199 599 aaPredicted RBP16.53■□□□□ 0.24
TP53-223ENST00000618944 MIER1Q8N108 512 aa16.52■□□□□ 0.24
TP53-223ENST00000618944 CCNB3Q8WWL7 1395 aa16.52■□□□□ 0.23
TP53-223ENST00000618944 RRBP1Q9P2E9 1410 aaKnown RBP16.51■□□□□ 0.23
TP53-223ENST00000618944 YTHDC1Q96MU7 727 aaKnown RBP16.51■□□□□ 0.23
TP53-223ENST00000618944 DNAJC5BQ9UF47 199 aa16.46■□□□□ 0.23
TP53-223ENST00000618944 GTF3C3Q9Y5Q9 886 aa16.45■□□□□ 0.22
TP53-223ENST00000618944 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
TP53-223ENST00000618944 POLA1P09884 1462 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 227.1 ms