RNA–Protein interactions for RNA: ENST00000617482.4

C11orf54-215, Transcript of chromosome 11 open reading frame 54, humanhuman

TSL 3 BASIC

Gene C11orf54, Length 2,417 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-215ENST00000617482 NISCHQ9Y2I1 1504 aa24.18■■□□□ 1.46
C11orf54-215ENST00000617482 SHROOM4Q9ULL8 1493 aa20.84■□□□□ 0.93
C11orf54-215ENST00000617482 SUPT5HO00267 1087 aaKnown RBP20.49■□□□□ 0.87
C11orf54-215ENST00000617482 CCDC180Q9P1Z9 1646 aa20.49■□□□□ 0.87
C11orf54-215ENST00000617482 ZCCHC6Q5VYS8 1495 aaKnown RBP20.44■□□□□ 0.86
C11orf54-215ENST00000617482 DCAF8L2P0C7V8 631 aa20.27■□□□□ 0.84
C11orf54-215ENST00000617482 CHIC1Q5VXU3 224 aa19.89■□□□□ 0.77
C11orf54-215ENST00000617482 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
C11orf54-215ENST00000617482 DCAF1Q9Y4B6 1507 aa19.75■□□□□ 0.75
C11orf54-215ENST00000617482 PCGF6Q9BYE7 350 aa19.41■□□□□ 0.7
C11orf54-215ENST00000617482 HRCP23327 699 aa19.39■□□□□ 0.69
C11orf54-215ENST00000617482 LOC105371045A0A1W2PR82 267 aa19.38■□□□□ 0.69
C11orf54-215ENST00000617482 SCRIBQ14160 1630 aa19.35■□□□□ 0.69
C11orf54-215ENST00000617482 ABCC9O60706 1549 aa19.27■□□□□ 0.67
C11orf54-215ENST00000617482 RSF1Q96T23 1441 aaPredicted RBP19.21■□□□□ 0.67
C11orf54-215ENST00000617482 PPARGC1BQ86YN6 1023 aaKnown RBP19.05■□□□□ 0.64
C11orf54-215ENST00000617482 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
C11orf54-215ENST00000617482 NACADO15069 1562 aa18.97■□□□□ 0.63
C11orf54-215ENST00000617482 RB1CC1Q8TDY2 1594 aa18.97■□□□□ 0.63
C11orf54-215ENST00000617482 TRIM26Q12899 539 aaPredicted RBP18.96■□□□□ 0.63
C11orf54-215ENST00000617482 FAM9AQ8IZU1 332 aaPredicted RBP18.95■□□□□ 0.62
C11orf54-215ENST00000617482 CECR2Q9BXF3 1484 aa18.92■□□□□ 0.62
C11orf54-215ENST00000617482 EHMT2Q96KQ7 1210 aa18.85■□□□□ 0.61
C11orf54-215ENST00000617482 MROH2BQ7Z745 1585 aa18.83■□□□□ 0.6
C11orf54-215ENST00000617482 WIZO95785 1651 aa18.73■□□□□ 0.59
C11orf54-215ENST00000617482 BAZ1AQ9NRL2 1556 aaPredicted RBP18.54■□□□□ 0.56
C11orf54-215ENST00000617482 ZEB1P37275 1124 aaPredicted RBP18.53■□□□□ 0.56
C11orf54-215ENST00000617482 UNC13AQ9UPW8 1703 aa18.53■□□□□ 0.56
C11orf54-215ENST00000617482 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
C11orf54-215ENST00000617482 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
C11orf54-215ENST00000617482 EIF4G1Q04637 1599 aaKnown RBP18.4■□□□□ 0.54
C11orf54-215ENST00000617482 AEBP2Q6ZN18 517 aaPredicted RBP18.4■□□□□ 0.54
C11orf54-215ENST00000617482 CCDC88BA6NC98 1476 aa18.38■□□□□ 0.53
C11orf54-215ENST00000617482 TOP2AP11388 1531 aaKnown RBP18.38■□□□□ 0.53
C11orf54-215ENST00000617482 ABCC8Q09428 1581 aa18.36■□□□□ 0.53
C11orf54-215ENST00000617482 SMARCA2P51531 1590 aa18.29■□□□□ 0.52
C11orf54-215ENST00000617482 BICRAQ9NZM4 1560 aa18.27■□□□□ 0.51
C11orf54-215ENST00000617482 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.25■□□□□ 0.51
C11orf54-215ENST00000617482 TTBK1Q5TCY1 1321 aaPredicted RBP18.24■□□□□ 0.51
C11orf54-215ENST00000617482 SOGA1O94964 1423 aa18.24■□□□□ 0.51
C11orf54-215ENST00000617482 CCER1Q8TC90 406 aaPredicted RBP18.19■□□□□ 0.5
C11orf54-215ENST00000617482 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
C11orf54-215ENST00000617482 CEP162Q5TB80 1403 aa18.16■□□□□ 0.5
C11orf54-215ENST00000617482 UBTFP17480 764 aaKnown RBP18.15■□□□□ 0.5
C11orf54-215ENST00000617482 RUSC2Q8N2Y8 1516 aa18.15■□□□□ 0.5
C11orf54-215ENST00000617482 TNIKQ9UKE5 1360 aa18.11■□□□□ 0.49
C11orf54-215ENST00000617482 WRNQ14191 1432 aaPredicted RBP eCLIP18.1■□□□□ 0.49
C11orf54-215ENST00000617482 EEA1Q15075 1411 aa18.06■□□□□ 0.48
C11orf54-215ENST00000617482 GOLGA3Q08378 1498 aa17.97■□□□□ 0.47
C11orf54-215ENST00000617482 PEG3Q9GZU2 1588 aa17.97■□□□□ 0.47
C11orf54-215ENST00000617482 ATAD2BQ9ULI0 1458 aa17.96■□□□□ 0.47
C11orf54-215ENST00000617482 SCAF1Q9H7N4 1312 aaKnown RBP17.93■□□□□ 0.46
C11orf54-215ENST00000617482 BAZ1BQ9UIG0 1483 aaKnown RBP17.92■□□□□ 0.46
C11orf54-215ENST00000617482 SYNJ1O43426 1573 aa17.91■□□□□ 0.46
C11orf54-215ENST00000617482 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
C11orf54-215ENST00000617482 DIEXFQ68CQ4 756 aaKnown RBP17.86■□□□□ 0.45
C11orf54-215ENST00000617482 RANGAP1P46060 587 aaPredicted RBP17.85■□□□□ 0.45
C11orf54-215ENST00000617482 CLIP1P30622 1438 aa17.82■□□□□ 0.44
C11orf54-215ENST00000617482 HNRNPUL2Q1KMD3 747 aaKnown RBP17.81■□□□□ 0.44
C11orf54-215ENST00000617482 KIF21BO75037 1637 aa17.78■□□□□ 0.44
C11orf54-215ENST00000617482 RAPGEF2Q9Y4G8 1499 aa17.77■□□□□ 0.43
C11orf54-215ENST00000617482 APLP2Q06481 763 aa17.74■□□□□ 0.43
C11orf54-215ENST00000617482 PELP1Q8IZL8 1130 aaKnown RBP17.73■□□□□ 0.43
C11orf54-215ENST00000617482 NEUROD1Q13562 356 aa17.72■□□□□ 0.43
C11orf54-215ENST00000617482 ACIN1Q9UKV3 1341 aaKnown RBP17.72■□□□□ 0.43
C11orf54-215ENST00000617482 VPS8Q8N3P4 1428 aa17.72■□□□□ 0.43
C11orf54-215ENST00000617482 ZNF316A6NFI3 1004 aaPredicted RBP17.68■□□□□ 0.42
C11orf54-215ENST00000617482 MYT1Q01538 1121 aa17.67■□□□□ 0.42
C11orf54-215ENST00000617482 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
C11orf54-215ENST00000617482 CENPBP07199 599 aaPredicted RBP17.61■□□□□ 0.41
C11orf54-215ENST00000617482 NCAPD3P42695 1498 aa17.58■□□□□ 0.4
C11orf54-215ENST00000617482 GTF3C3Q9Y5Q9 886 aa17.56■□□□□ 0.4
C11orf54-215ENST00000617482 HMGXB3Q12766 1538 aa17.55■□□□□ 0.4
C11orf54-215ENST00000617482 BIVM-ERCC5R4GMW8 1640 aa17.54■□□□□ 0.4
C11orf54-215ENST00000617482 PRXQ9BXM0 1461 aa17.54■□□□□ 0.4
C11orf54-215ENST00000617482 KANK4Q5T7N3 995 aaPredicted RBP17.51■□□□□ 0.39
C11orf54-215ENST00000617482 CUX1P39880 1505 aa17.51■□□□□ 0.39
C11orf54-215ENST00000617482 YTHDC1Q96MU7 727 aaKnown RBP17.49■□□□□ 0.39
C11orf54-215ENST00000617482 ERICH3Q5RHP9 1530 aa17.49■□□□□ 0.39
C11orf54-215ENST00000617482 ARAP1Q96P48 1450 aa17.48■□□□□ 0.39
C11orf54-215ENST00000617482 MIER1Q8N108 512 aa17.48■□□□□ 0.39
C11orf54-215ENST00000617482 KIF27Q86VH2 1401 aa17.47■□□□□ 0.39
C11orf54-215ENST00000617482 CFTRP13569 1480 aa17.44■□□□□ 0.38
C11orf54-215ENST00000617482 DHX57Q6P158 1386 aaKnown RBP17.37■□□□□ 0.37
C11orf54-215ENST00000617482 ITGAEP38570 1179 aa17.33■□□□□ 0.37
C11orf54-215ENST00000617482 ARHGAP35Q9NRY4 1499 aa17.33■□□□□ 0.37
C11orf54-215ENST00000617482 CLSPNQ9HAW4 1339 aa17.32■□□□□ 0.36
C11orf54-215ENST00000617482 IGF1RP08069 1367 aa17.31■□□□□ 0.36
C11orf54-215ENST00000617482 CUX2O14529 1486 aa17.31■□□□□ 0.36
C11orf54-215ENST00000617482 RRBP1Q9P2E9 1410 aaKnown RBP17.31■□□□□ 0.36
C11orf54-215ENST00000617482 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
C11orf54-215ENST00000617482 CADPSQ9ULU8 1353 aa17.28■□□□□ 0.36
C11orf54-215ENST00000617482 CC2D2AQ9P2K1 1620 aa17.28■□□□□ 0.36
C11orf54-215ENST00000617482 PRDM2Q13029 1718 aa17.27■□□□□ 0.35
C11orf54-215ENST00000617482 CARMIL1Q5VZK9 1371 aa17.24■□□□□ 0.35
C11orf54-215ENST00000617482 FGD5Q6ZNL6 1462 aa17.21■□□□□ 0.35
C11orf54-215ENST00000617482 P3H3Q8IVL6 736 aa17.19■□□□□ 0.34
C11orf54-215ENST00000617482 PHF23Q9BUL5 403 aaPredicted RBP17.18■□□□□ 0.34
C11orf54-215ENST00000617482 ATP1B4Q9UN42 357 aaPredicted RBP17.17■□□□□ 0.34
C11orf54-215ENST00000617482 SLC24A1O60721 1099 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms