RNA–Protein interactions for RNA: ENST00000617198.4

DDX1-207, Transcript of DEAD-box helicase 1, humanhuman

TSL 1 (best) BASIC

Gene DDX1, Length 2,257 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX1-207ENST00000617198 NISCHQ9Y2I1 1504 aa35.67■■■■□ 3.3
DDX1-207ENST00000617198 SHROOM4Q9ULL8 1493 aa30.49■■■□□ 2.47
DDX1-207ENST00000617198 CCDC180Q9P1Z9 1646 aa30.26■■■□□ 2.44
DDX1-207ENST00000617198 ZCCHC6Q5VYS8 1495 aaKnown RBP30.23■■■□□ 2.43
DDX1-207ENST00000617198 SUPT5HO00267 1087 aaKnown RBP30.02■■■□□ 2.4
DDX1-207ENST00000617198 DCAF8L2P0C7V8 631 aa29.38■■■□□ 2.29
DDX1-207ENST00000617198 CHIC1Q5VXU3 224 aa29.37■■■□□ 2.29
DDX1-207ENST00000617198 DCAF1Q9Y4B6 1507 aa29.32■■■□□ 2.28
DDX1-207ENST00000617198 MYO15BQ96JP2 1530 aa29.31■■■□□ 2.28
DDX1-207ENST00000617198 HRCP23327 699 aa28.92■■■□□ 2.22
DDX1-207ENST00000617198 PCGF6Q9BYE7 350 aa28.68■■■□□ 2.18
DDX1-207ENST00000617198 ABCC9O60706 1549 aa28.59■■■□□ 2.17
DDX1-207ENST00000617198 LOC105371045A0A1W2PR82 267 aa28.46■■■□□ 2.15
DDX1-207ENST00000617198 SCRIBQ14160 1630 aa28.33■■■□□ 2.13
DDX1-207ENST00000617198 RSF1Q96T23 1441 aaPredicted RBP28.31■■■□□ 2.12
DDX1-207ENST00000617198 PPARGC1BQ86YN6 1023 aaKnown RBP28.19■■■□□ 2.1
DDX1-207ENST00000617198 TRIM26Q12899 539 aaPredicted RBP28.15■■■□□ 2.1
DDX1-207ENST00000617198 RB1CC1Q8TDY2 1594 aa28.08■■■□□ 2.09
DDX1-207ENST00000617198 TRIM41Q8WV44 630 aa27.99■■■□□ 2.07
DDX1-207ENST00000617198 NACADO15069 1562 aa27.9■■■□□ 2.06
DDX1-207ENST00000617198 CECR2Q9BXF3 1484 aa27.76■■■□□ 2.03
DDX1-207ENST00000617198 MROH2BQ7Z745 1585 aa27.72■■■□□ 2.03
DDX1-207ENST00000617198 FAM9AQ8IZU1 332 aaPredicted RBP27.71■■■□□ 2.03
DDX1-207ENST00000617198 ZEB1P37275 1124 aaPredicted RBP27.69■■■□□ 2.02
DDX1-207ENST00000617198 WIZO95785 1651 aa27.59■■■□□ 2.01
DDX1-207ENST00000617198 BAZ1AQ9NRL2 1556 aaPredicted RBP27.48■■□□□ 1.99
DDX1-207ENST00000617198 EHMT2Q96KQ7 1210 aa27.42■■□□□ 1.98
DDX1-207ENST00000617198 EIF4G1Q04637 1599 aaKnown RBP27.38■■□□□ 1.97
DDX1-207ENST00000617198 TOP2AP11388 1531 aaKnown RBP27.19■■□□□ 1.94
DDX1-207ENST00000617198 SMARCA4P51532 1647 aa27.12■■□□□ 1.93
DDX1-207ENST00000617198 CCDC88BA6NC98 1476 aa27.05■■□□□ 1.92
DDX1-207ENST00000617198 ABCC8Q09428 1581 aa27.05■■□□□ 1.92
DDX1-207ENST00000617198 SMARCA2P51531 1590 aa27.04■■□□□ 1.92
DDX1-207ENST00000617198 UNC13AQ9UPW8 1703 aa26.98■■□□□ 1.91
DDX1-207ENST00000617198 WRNQ14191 1432 aaPredicted RBP eCLIP26.95■■□□□ 1.91
DDX1-207ENST00000617198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.9■■□□□ 1.9
DDX1-207ENST00000617198 CCER1Q8TC90 406 aaPredicted RBP26.88■■□□□ 1.89
DDX1-207ENST00000617198 CEP162Q5TB80 1403 aa26.86■■□□□ 1.89
DDX1-207ENST00000617198 SOGA1O94964 1423 aa26.84■■□□□ 1.89
DDX1-207ENST00000617198 EEA1Q15075 1411 aa26.83■■□□□ 1.89
DDX1-207ENST00000617198 TNIKQ9UKE5 1360 aa26.83■■□□□ 1.88
DDX1-207ENST00000617198 SCAF1Q9H7N4 1312 aaKnown RBP26.76■■□□□ 1.87
DDX1-207ENST00000617198 CSRNP3Q8WYN3 585 aa26.73■■□□□ 1.87
DDX1-207ENST00000617198 RUSC2Q8N2Y8 1516 aa26.68■■□□□ 1.86
DDX1-207ENST00000617198 GOLGA3Q08378 1498 aa26.63■■□□□ 1.85
DDX1-207ENST00000617198 TTBK1Q5TCY1 1321 aaPredicted RBP26.62■■□□□ 1.85
DDX1-207ENST00000617198 UBTFP17480 764 aaKnown RBP26.62■■□□□ 1.85
DDX1-207ENST00000617198 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
DDX1-207ENST00000617198 BICRAQ9NZM4 1560 aa26.61■■□□□ 1.85
DDX1-207ENST00000617198 PELP1Q8IZL8 1130 aaKnown RBP26.6■■□□□ 1.85
DDX1-207ENST00000617198 PABPN1Q86U42 306 aaKnown RBP eCLIP26.52■■□□□ 1.84
DDX1-207ENST00000617198 DIEXFQ68CQ4 756 aaKnown RBP26.51■■□□□ 1.83
DDX1-207ENST00000617198 ACIN1Q9UKV3 1341 aaKnown RBP26.47■■□□□ 1.83
DDX1-207ENST00000617198 CEP164Q9UPV0 1460 aa26.46■■□□□ 1.83
DDX1-207ENST00000617198 SYNJ1O43426 1573 aa26.45■■□□□ 1.82
DDX1-207ENST00000617198 KIF21BO75037 1637 aa26.45■■□□□ 1.82
DDX1-207ENST00000617198 NEUROD1Q13562 356 aa26.37■■□□□ 1.81
DDX1-207ENST00000617198 ATAD2BQ9ULI0 1458 aa26.34■■□□□ 1.81
DDX1-207ENST00000617198 CLIP1P30622 1438 aa26.32■■□□□ 1.8
DDX1-207ENST00000617198 CENPBP07199 599 aaPredicted RBP26.31■■□□□ 1.8
DDX1-207ENST00000617198 BAZ1BQ9UIG0 1483 aaKnown RBP26.29■■□□□ 1.8
DDX1-207ENST00000617198 ZNF316A6NFI3 1004 aaPredicted RBP26.26■■□□□ 1.79
DDX1-207ENST00000617198 VPS8Q8N3P4 1428 aa26.26■■□□□ 1.79
DDX1-207ENST00000617198 RAPGEF2Q9Y4G8 1499 aa26.19■■□□□ 1.78
DDX1-207ENST00000617198 HNRNPUL2Q1KMD3 747 aaKnown RBP26.16■■□□□ 1.78
DDX1-207ENST00000617198 GTF3C3Q9Y5Q9 886 aa26.14■■□□□ 1.77
DDX1-207ENST00000617198 TOP2BQ02880 1626 aa26.13■■□□□ 1.77
DDX1-207ENST00000617198 APLP2Q06481 763 aa26.12■■□□□ 1.77
DDX1-207ENST00000617198 BIVM-ERCC5R4GMW8 1640 aa26.05■■□□□ 1.76
DDX1-207ENST00000617198 ERICH3Q5RHP9 1530 aa25.98■■□□□ 1.75
DDX1-207ENST00000617198 RANGAP1P46060 587 aaPredicted RBP25.95■■□□□ 1.74
DDX1-207ENST00000617198 PRXQ9BXM0 1461 aa25.93■■□□□ 1.74
DDX1-207ENST00000617198 MIER1Q8N108 512 aa25.88■■□□□ 1.73
DDX1-207ENST00000617198 ARAP1Q96P48 1450 aa25.87■■□□□ 1.73
DDX1-207ENST00000617198 HMGXB3Q12766 1538 aa25.84■■□□□ 1.73
DDX1-207ENST00000617198 YTHDC1Q96MU7 727 aaKnown RBP25.84■■□□□ 1.73
DDX1-207ENST00000617198 CLSPNQ9HAW4 1339 aa25.83■■□□□ 1.73
DDX1-207ENST00000617198 CUX1P39880 1505 aa25.8■■□□□ 1.72
DDX1-207ENST00000617198 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
DDX1-207ENST00000617198 KIF27Q86VH2 1401 aa25.75■■□□□ 1.71
DDX1-207ENST00000617198 DHX57Q6P158 1386 aaKnown RBP25.75■■□□□ 1.71
DDX1-207ENST00000617198 KANK4Q5T7N3 995 aaPredicted RBP25.72■■□□□ 1.71
DDX1-207ENST00000617198 RRBP1Q9P2E9 1410 aaKnown RBP25.69■■□□□ 1.7
DDX1-207ENST00000617198 CFTRP13569 1480 aa25.67■■□□□ 1.7
DDX1-207ENST00000617198 ARHGAP35Q9NRY4 1499 aa25.6■■□□□ 1.69
DDX1-207ENST00000617198 CUX2O14529 1486 aa25.6■■□□□ 1.69
DDX1-207ENST00000617198 CCNB3Q8WWL7 1395 aa25.55■■□□□ 1.68
DDX1-207ENST00000617198 PRDM2Q13029 1718 aa25.52■■□□□ 1.68
DDX1-207ENST00000617198 IGF1RP08069 1367 aa25.43■■□□□ 1.66
DDX1-207ENST00000617198 MAP3K1Q13233 1512 aa25.42■■□□□ 1.66
DDX1-207ENST00000617198 TIAM1Q13009 1591 aa25.39■■□□□ 1.66
DDX1-207ENST00000617198 ITGAEP38570 1179 aa25.35■■□□□ 1.65
DDX1-207ENST00000617198 RAB3GAP2Q9H2M9 1393 aa25.33■■□□□ 1.65
DDX1-207ENST00000617198 CARMIL1Q5VZK9 1371 aa25.33■■□□□ 1.65
DDX1-207ENST00000617198 MYT1Q01538 1121 aa25.32■■□□□ 1.64
DDX1-207ENST00000617198 CADPSQ9ULU8 1353 aa25.31■■□□□ 1.64
DDX1-207ENST00000617198 FGD5Q6ZNL6 1462 aa25.29■■□□□ 1.64
DDX1-207ENST00000617198 MAPKBP1O60336 1514 aa25.29■■□□□ 1.64
DDX1-207ENST00000617198 LRRC9Q6ZRR7 1453 aa25.29■■□□□ 1.64
DDX1-207ENST00000617198 SETD5Q9C0A6 1442 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms