RNA–Protein interactions for RNA: ENST00000616315.1

NEAT1-205, nuclear paraspeckle assembly transcript 1, humanhuman

TSL 2 BASIC

Gene NEAT1, Length 483 nt, Biotype lincRNA, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEAT1-205ENST00000616315 AEBP2Q6ZN18 517 aaPredicted RBP27.33■■□□□ 1.97
NEAT1-205ENST00000616315 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
NEAT1-205ENST00000616315 SENP3Q9H4L4 574 aaPredicted RBP23.21■■□□□ 1.31
NEAT1-205ENST00000616315 PHF23Q9BUL5 403 aaPredicted RBP22.95■■□□□ 1.26
NEAT1-205ENST00000616315 FOXD1Q16676 465 aa21.73■■□□□ 1.07
NEAT1-205ENST00000616315 PLPPR3Q6T4P5 718 aa20.45■□□□□ 0.86
NEAT1-205ENST00000616315 MSH5O43196 834 aa20.3■□□□□ 0.84
NEAT1-205ENST00000616315 PPP6R1Q9UPN7 881 aa20.26■□□□□ 0.83
NEAT1-205ENST00000616315 PIAS4Q8N2W9 510 aaPredicted RBP20.23■□□□□ 0.83
NEAT1-205ENST00000616315 ADRA2BP18089 450 aa20.16■□□□□ 0.82
NEAT1-205ENST00000616315 POTEDQ86YR6 584 aa20.14■□□□□ 0.81
NEAT1-205ENST00000616315 MAPK8IP2Q13387 824 aaPredicted RBP18.59■□□□□ 0.57
NEAT1-205ENST00000616315 DMRT2Q9Y5R5 561 aa18.42■□□□□ 0.54
NEAT1-205ENST00000616315 SCAF1Q9H7N4 1312 aaKnown RBP18.31■□□□□ 0.52
NEAT1-205ENST00000616315 PPP4R3CPQ6ZMV5 832 aa17.95■□□□□ 0.46
NEAT1-205ENST00000616315 HOXD11P31277 338 aaPredicted RBP17.69■□□□□ 0.42
NEAT1-205ENST00000616315 DCAF8L1A6NGE4 600 aa17.65■□□□□ 0.42
NEAT1-205ENST00000616315 CNKSR2Q8WXI2 1034 aa17.62■□□□□ 0.41
NEAT1-205ENST00000616315 CACNB1Q02641 598 aaPredicted RBP17.54■□□□□ 0.4
NEAT1-205ENST00000616315 RNF216Q9NWF9 866 aaPredicted RBP17.5■□□□□ 0.39
NEAT1-205ENST00000616315 RNF39Q9H2S5 420 aa17.36■□□□□ 0.37
NEAT1-205ENST00000616315 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
NEAT1-205ENST00000616315 C1QBPQ07021 282 aaKnown RBP17.05■□□□□ 0.32
NEAT1-205ENST00000616315 DNAJC5BQ9UF47 199 aa17.05■□□□□ 0.32
NEAT1-205ENST00000616315 NPM3O75607 178 aaKnown RBP16.98■□□□□ 0.31
NEAT1-205ENST00000616315 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.82■□□□□ 0.28
NEAT1-205ENST00000616315 KCNA4P22459 653 aa16.55■□□□□ 0.24
NEAT1-205ENST00000616315 U3KPZ7 1027 aaPredicted RBP16.51■□□□□ 0.23
NEAT1-205ENST00000616315 SPINK5Q9NQ38 1064 aaPredicted RBP16.33■□□□□ 0.2
NEAT1-205ENST00000616315 SLC4A2P04920 1241 aa16.29■□□□□ 0.2
NEAT1-205ENST00000616315 CAPN15O75808 1086 aa16.24■□□□□ 0.19
NEAT1-205ENST00000616315 DSG3P32926 999 aa16.23■□□□□ 0.19
NEAT1-205ENST00000616315 TRHP20396 242 aaPredicted RBP15.97■□□□□ 0.15
NEAT1-205ENST00000616315 ABCB7O75027 752 aa15.9■□□□□ 0.14
NEAT1-205ENST00000616315 APLP2Q06481 763 aa15.88■□□□□ 0.13
NEAT1-205ENST00000616315 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
NEAT1-205ENST00000616315 HNRNPUL2Q1KMD3 747 aaKnown RBP15.87■□□□□ 0.13
NEAT1-205ENST00000616315 ZNF219Q9P2Y4 722 aaPredicted RBP15.87■□□□□ 0.13
NEAT1-205ENST00000616315 SAMD1Q6SPF0 538 aaPredicted RBP15.8■□□□□ 0.12
NEAT1-205ENST00000616315 POTEHQ6S545 545 aa15.73■□□□□ 0.11
NEAT1-205ENST00000616315 MYCNP04198 464 aaPredicted RBP15.65■□□□□ 0.1
NEAT1-205ENST00000616315 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
NEAT1-205ENST00000616315 POLA2Q14181 598 aa15.52■□□□□ 0.08
NEAT1-205ENST00000616315 FOXD4L1Q9NU39 408 aa15.43■□□□□ 0.06
NEAT1-205ENST00000616315 ATF5Q9Y2D1 282 aaPredicted RBP15.42■□□□□ 0.06
NEAT1-205ENST00000616315 RBM42Q9BTD8 480 aaKnown RBP15.39■□□□□ 0.05
NEAT1-205ENST00000616315 ZBTB22O15209 634 aa15.25■□□□□ 0.03
NEAT1-205ENST00000616315 CHRDL2Q6WN34 429 aa15.17■□□□□ 0.02
NEAT1-205ENST00000616315 ZBTB12Q9Y330 459 aaPredicted RBP15.09■□□□□ 0.01
NEAT1-205ENST00000616315 AKT1S1Q96B36 256 aa15.05■□□□□ -0
NEAT1-205ENST00000616315 OSCARQ8IYS5 282 aa15.03■□□□□ -0
NEAT1-205ENST00000616315 REM2Q8IYK8 340 aaPredicted RBP14.95□□□□□ -0.02
NEAT1-205ENST00000616315 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
NEAT1-205ENST00000616315 PIP4P2Q8N4L2 257 aa14.82□□□□□ -0.04
NEAT1-205ENST00000616315 PITPNM1O00562 1244 aa14.79□□□□□ -0.04
NEAT1-205ENST00000616315 FXR2P51116 673 aaKnown RBP eCLIP14.69□□□□□ -0.06
NEAT1-205ENST00000616315 FBLN2P98095 1184 aa14.69□□□□□ -0.06
NEAT1-205ENST00000616315 MKRN4PQ13434 485 aaPredicted RBP14.68□□□□□ -0.06
NEAT1-205ENST00000616315 SP7Q8TDD2 431 aaPredicted RBP14.67□□□□□ -0.06
NEAT1-205ENST00000616315 SPDYE2BA6NHP3 402 aa14.66□□□□□ -0.06
NEAT1-205ENST00000616315 SPDYE6P0CI01 402 aa14.66□□□□□ -0.06
NEAT1-205ENST00000616315 SPDYE2Q495Y8 402 aa14.66□□□□□ -0.06
NEAT1-205ENST00000616315 HAX1O00165 279 aa14.55□□□□□ -0.08
NEAT1-205ENST00000616315 SSUH2Q9Y2M2 353 aa14.49□□□□□ -0.09
NEAT1-205ENST00000616315 ZNF692Q9BU19 519 aaPredicted RBP14.48□□□□□ -0.09
NEAT1-205ENST00000616315 EVX2Q03828 476 aa14.46□□□□□ -0.09
NEAT1-205ENST00000616315 CLEC11AQ9Y240 323 aa14.45□□□□□ -0.1
NEAT1-205ENST00000616315 SPDYE1Q8NFV5 336 aaPredicted RBP14.43□□□□□ -0.1
NEAT1-205ENST00000616315 CSRNP3Q8WYN3 585 aa14.4□□□□□ -0.1
NEAT1-205ENST00000616315 PRKAR2AP13861 404 aaKnown RBP14.39□□□□□ -0.11
NEAT1-205ENST00000616315 PABPN1Q86U42 306 aaKnown RBP eCLIP14.29□□□□□ -0.12
NEAT1-205ENST00000616315 CHADLQ6NUI6 762 aa14.24□□□□□ -0.13
NEAT1-205ENST00000616315 C19orf67A6NJJ6 358 aa14.23□□□□□ -0.13
NEAT1-205ENST00000616315 PRR29P0C7W0 189 aa14.18□□□□□ -0.14
NEAT1-205ENST00000616315 EHMT2Q96KQ7 1210 aa14.1□□□□□ -0.15
NEAT1-205ENST00000616315 GABBR2O75899 941 aa14.06□□□□□ -0.16
NEAT1-205ENST00000616315 FARP1Q9Y4F1 1045 aaPredicted RBP13.98□□□□□ -0.17
NEAT1-205ENST00000616315 CD44P16070 742 aaKnown RBP13.92□□□□□ -0.18
NEAT1-205ENST00000616315 SPDYE4A6NLX3 237 aa13.85□□□□□ -0.19
NEAT1-205ENST00000616315 CREBZFQ9NS37 354 aa13.85□□□□□ -0.19
NEAT1-205ENST00000616315 POTEIP0CG38 1075 aa13.81□□□□□ -0.2
NEAT1-205ENST00000616315 STAG3Q9UJ98 1225 aa13.79□□□□□ -0.2
NEAT1-205ENST00000616315 LHX8Q68G74 356 aa13.76□□□□□ -0.21
NEAT1-205ENST00000616315 ZRANB1Q9UGI0 708 aa13.71□□□□□ -0.21
NEAT1-205ENST00000616315 ZNF579Q8NAF0 562 aaKnown RBP13.69□□□□□ -0.22
NEAT1-205ENST00000616315 CLCN6P51797 869 aa13.67□□□□□ -0.22
NEAT1-205ENST00000616315 MNX1P50219 401 aaPredicted RBP13.6□□□□□ -0.23
NEAT1-205ENST00000616315 DCBLD2Q96PD2 775 aa13.6□□□□□ -0.23
NEAT1-205ENST00000616315 GALR2O43603 387 aaPredicted RBP13.58□□□□□ -0.24
NEAT1-205ENST00000616315 PHF12Q96QT6 1004 aa13.54□□□□□ -0.24
NEAT1-205ENST00000616315 PROM2Q8N271 834 aa13.52□□□□□ -0.25
NEAT1-205ENST00000616315 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
NEAT1-205ENST00000616315 PAK3O75914 559 aaPredicted RBP13.48□□□□□ -0.25
NEAT1-205ENST00000616315 PELP1Q8IZL8 1130 aaKnown RBP13.37□□□□□ -0.27
NEAT1-205ENST00000616315 POTEB2H3BUK9 544 aa13.36□□□□□ -0.27
NEAT1-205ENST00000616315 MS4A3Q96HJ5 214 aa13.34□□□□□ -0.27
NEAT1-205ENST00000616315 TSPYL2Q9H2G4 693 aaPredicted RBP13.32□□□□□ -0.28
NEAT1-205ENST00000616315 OTUD5Q96G74 571 aa13.3□□□□□ -0.28
NEAT1-205ENST00000616315 CCDC61Q9Y6R9 512 aa13.27□□□□□ -0.29
NEAT1-205ENST00000616315 ASTLQ6HA08 431 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms