RNA–Protein interactions for RNA: ENST00000616122.4

SYNCRIP-204, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,764 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-204ENST00000616122 NISCHQ9Y2I1 1504 aa10.6□□□□□ -0.71
SYNCRIP-204ENST00000616122 DCAF8L2P0C7V8 631 aa9.92□□□□□ -0.82
SYNCRIP-204ENST00000616122 SUPT5HO00267 1087 aaKnown RBP9.74□□□□□ -0.85
SYNCRIP-204ENST00000616122 SHROOM4Q9ULL8 1493 aa9.67□□□□□ -0.86
SYNCRIP-204ENST00000616122 CHIC1Q5VXU3 224 aa9.13□□□□□ -0.95
SYNCRIP-204ENST00000616122 PCGF6Q9BYE7 350 aa9.11□□□□□ -0.95
SYNCRIP-204ENST00000616122 FAM9AQ8IZU1 332 aaPredicted RBP9.08□□□□□ -0.96
SYNCRIP-204ENST00000616122 EHMT2Q96KQ7 1210 aa9.08□□□□□ -0.96
SYNCRIP-204ENST00000616122 TRIM41Q8WV44 630 aa9.01□□□□□ -0.97
SYNCRIP-204ENST00000616122 LOC105371045A0A1W2PR82 267 aa8.96□□□□□ -0.98
SYNCRIP-204ENST00000616122 HRCP23327 699 aa8.87□□□□□ -0.99
SYNCRIP-204ENST00000616122 ZCCHC6Q5VYS8 1495 aaKnown RBP8.85□□□□□ -0.99
SYNCRIP-204ENST00000616122 TRIM26Q12899 539 aaPredicted RBP8.78□□□□□ -1
SYNCRIP-204ENST00000616122 TTBK1Q5TCY1 1321 aaPredicted RBP8.77□□□□□ -1.01
SYNCRIP-204ENST00000616122 PPARGC1BQ86YN6 1023 aaKnown RBP8.74□□□□□ -1.01
SYNCRIP-204ENST00000616122 ABCC9O60706 1549 aa8.72□□□□□ -1.01
SYNCRIP-204ENST00000616122 ZEB1P37275 1124 aaPredicted RBP8.72□□□□□ -1.01
SYNCRIP-204ENST00000616122 UBTFP17480 764 aaKnown RBP8.72□□□□□ -1.01
SYNCRIP-204ENST00000616122 APLP2Q06481 763 aa8.71□□□□□ -1.02
SYNCRIP-204ENST00000616122 CCER1Q8TC90 406 aaPredicted RBP8.68□□□□□ -1.02
SYNCRIP-204ENST00000616122 RANGAP1P46060 587 aaPredicted RBP8.65□□□□□ -1.03
SYNCRIP-204ENST00000616122 PABPN1Q86U42 306 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNCRIP-204ENST00000616122 CCDC180Q9P1Z9 1646 aa8.56□□□□□ -1.04
SYNCRIP-204ENST00000616122 RSF1Q96T23 1441 aaPredicted RBP8.55□□□□□ -1.04
SYNCRIP-204ENST00000616122 MYO15BQ96JP2 1530 aa8.55□□□□□ -1.04
SYNCRIP-204ENST00000616122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.53□□□□□ -1.04
SYNCRIP-204ENST00000616122 CSRNP3Q8WYN3 585 aa8.5□□□□□ -1.05
SYNCRIP-204ENST00000616122 DCAF1Q9Y4B6 1507 aa8.5□□□□□ -1.05
SYNCRIP-204ENST00000616122 HNRNPUL2Q1KMD3 747 aaKnown RBP8.48□□□□□ -1.05
SYNCRIP-204ENST00000616122 CENPBP07199 599 aaPredicted RBP8.46□□□□□ -1.06
SYNCRIP-204ENST00000616122 SCRIBQ14160 1630 aa8.45□□□□□ -1.06
SYNCRIP-204ENST00000616122 ATP1B4Q9UN42 357 aaPredicted RBP8.41□□□□□ -1.06
SYNCRIP-204ENST00000616122 CECR2Q9BXF3 1484 aa8.41□□□□□ -1.06
SYNCRIP-204ENST00000616122 ITGAEP38570 1179 aa8.37□□□□□ -1.07
SYNCRIP-204ENST00000616122 DIEXFQ68CQ4 756 aaKnown RBP8.35□□□□□ -1.07
SYNCRIP-204ENST00000616122 YTHDC1Q96MU7 727 aaKnown RBP8.34□□□□□ -1.07
SYNCRIP-204ENST00000616122 NACADO15069 1562 aa8.27□□□□□ -1.09
SYNCRIP-204ENST00000616122 MROH2BQ7Z745 1585 aa8.25□□□□□ -1.09
SYNCRIP-204ENST00000616122 PELP1Q8IZL8 1130 aaKnown RBP8.25□□□□□ -1.09
SYNCRIP-204ENST00000616122 ZNF316A6NFI3 1004 aaPredicted RBP8.23□□□□□ -1.09
SYNCRIP-204ENST00000616122 MYT1Q01538 1121 aa8.22□□□□□ -1.09
SYNCRIP-204ENST00000616122 RB1CC1Q8TDY2 1594 aa8.21□□□□□ -1.09
SYNCRIP-204ENST00000616122 EEA1Q15075 1411 aa8.21□□□□□ -1.1
SYNCRIP-204ENST00000616122 WRNQ14191 1432 aaPredicted RBP eCLIP8.21□□□□□ -1.1
SYNCRIP-204ENST00000616122 CEP162Q5TB80 1403 aa8.21□□□□□ -1.1
SYNCRIP-204ENST00000616122 TNIKQ9UKE5 1360 aa8.2□□□□□ -1.1
SYNCRIP-204ENST00000616122 BAZ1AQ9NRL2 1556 aaPredicted RBP8.2□□□□□ -1.1
SYNCRIP-204ENST00000616122 SOGA1O94964 1423 aa8.18□□□□□ -1.1
SYNCRIP-204ENST00000616122 CLIP1P30622 1438 aa8.18□□□□□ -1.1
SYNCRIP-204ENST00000616122 ACIN1Q9UKV3 1341 aaKnown RBP8.17□□□□□ -1.1
SYNCRIP-204ENST00000616122 P3H3Q8IVL6 736 aa8.17□□□□□ -1.1
SYNCRIP-204ENST00000616122 GTF3C3Q9Y5Q9 886 aa8.17□□□□□ -1.1
SYNCRIP-204ENST00000616122 FAM50AQ14320 339 aaKnown RBP8.17□□□□□ -1.1
SYNCRIP-204ENST00000616122 CCDC88BA6NC98 1476 aa8.14□□□□□ -1.11
SYNCRIP-204ENST00000616122 NEUROD1Q13562 356 aa8.13□□□□□ -1.11
SYNCRIP-204ENST00000616122 GOLGA3Q08378 1498 aa8.11□□□□□ -1.11
SYNCRIP-204ENST00000616122 NEFLP07196 543 aa8.08□□□□□ -1.12
SYNCRIP-204ENST00000616122 SCAF1Q9H7N4 1312 aaKnown RBP8.08□□□□□ -1.12
SYNCRIP-204ENST00000616122 BAZ1BQ9UIG0 1483 aaKnown RBP8.07□□□□□ -1.12
SYNCRIP-204ENST00000616122 CEP164Q9UPV0 1460 aa8.07□□□□□ -1.12
SYNCRIP-204ENST00000616122 MIER1Q8N108 512 aa8.06□□□□□ -1.12
SYNCRIP-204ENST00000616122 ABCC8Q09428 1581 aa8.04□□□□□ -1.12
SYNCRIP-204ENST00000616122 KIF27Q86VH2 1401 aa8.03□□□□□ -1.12
SYNCRIP-204ENST00000616122 ARID3CA6NKF2 412 aa8.02□□□□□ -1.13
SYNCRIP-204ENST00000616122 TRIM52Q96A61 297 aa8.02□□□□□ -1.13
SYNCRIP-204ENST00000616122 RUSC2Q8N2Y8 1516 aa8.02□□□□□ -1.13
SYNCRIP-204ENST00000616122 VPS8Q8N3P4 1428 aa8.01□□□□□ -1.13
SYNCRIP-204ENST00000616122 KANK4Q5T7N3 995 aaPredicted RBP8.01□□□□□ -1.13
SYNCRIP-204ENST00000616122 WIZO95785 1651 aa8□□□□□ -1.13
SYNCRIP-204ENST00000616122 DDX10Q13206 875 aaKnown RBP7.99□□□□□ -1.13
SYNCRIP-204ENST00000616122 CLSPNQ9HAW4 1339 aa7.98□□□□□ -1.13
SYNCRIP-204ENST00000616122 CNGB1Q14028 1251 aaPredicted RBP7.98□□□□□ -1.13
SYNCRIP-204ENST00000616122 ATAD2BQ9ULI0 1458 aa7.98□□□□□ -1.13
SYNCRIP-204ENST00000616122 POLR3GLQ9BT43 218 aa7.98□□□□□ -1.13
SYNCRIP-204ENST00000616122 FBLN2P98095 1184 aa7.97□□□□□ -1.13
SYNCRIP-204ENST00000616122 TOP2AP11388 1531 aaKnown RBP7.97□□□□□ -1.13
SYNCRIP-204ENST00000616122 ANP32CO43423 234 aa7.95□□□□□ -1.14
SYNCRIP-204ENST00000616122 MTUS2Q5JR59 1369 aa7.95□□□□□ -1.14
SYNCRIP-204ENST00000616122 CARMIL1Q5VZK9 1371 aa7.94□□□□□ -1.14
SYNCRIP-204ENST00000616122 CHIC2Q9UKJ5 165 aa7.94□□□□□ -1.14
SYNCRIP-204ENST00000616122 CCNB3Q8WWL7 1395 aa7.93□□□□□ -1.14
SYNCRIP-204ENST00000616122 HIRIP3Q9BW71 556 aaPredicted RBP7.93□□□□□ -1.14
SYNCRIP-204ENST00000616122 TONSLQ96HA7 1378 aa7.93□□□□□ -1.14
SYNCRIP-204ENST00000616122 BCANQ96GW7 911 aa7.93□□□□□ -1.14
SYNCRIP-204ENST00000616122 RAPGEF2Q9Y4G8 1499 aa7.93□□□□□ -1.14
SYNCRIP-204ENST00000616122 CDK11AQ9UQ88 783 aaPredicted RBP7.92□□□□□ -1.14
SYNCRIP-204ENST00000616122 SIN3AQ96ST3 1273 aa7.92□□□□□ -1.14
SYNCRIP-204ENST00000616122 CUX2O14529 1486 aa7.91□□□□□ -1.14
SYNCRIP-204ENST00000616122 ZNF326Q5BKZ1 582 aaKnown RBP7.91□□□□□ -1.14
SYNCRIP-204ENST00000616122 CADPSQ9ULU8 1353 aa7.89□□□□□ -1.15
SYNCRIP-204ENST00000616122 SMARCA4P51532 1647 aa7.89□□□□□ -1.15
SYNCRIP-204ENST00000616122 ZNF777Q9ULD5 760 aaPredicted RBP7.89□□□□□ -1.15
SYNCRIP-204ENST00000616122 SMARCA2P51531 1590 aa7.88□□□□□ -1.15
SYNCRIP-204ENST00000616122 RRP7BPQ9NSQ0 103 aa7.88□□□□□ -1.15
SYNCRIP-204ENST00000616122 TDRD9Q8NDG6 1382 aaKnown RBP7.86□□□□□ -1.15
SYNCRIP-204ENST00000616122 TIMELESSQ9UNS1 1208 aa7.86□□□□□ -1.15
SYNCRIP-204ENST00000616122 IGF1RP08069 1367 aa7.85□□□□□ -1.15
SYNCRIP-204ENST00000616122 FHAD1B1AJZ9 1412 aa7.84□□□□□ -1.15
SYNCRIP-204ENST00000616122 HNRNPUQ00839 825 aaKnown RBP eCLIP7.84□□□□□ -1.15
SYNCRIP-204ENST00000616122 ERICH6Q7L0X2 663 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms