RNA–Protein interactions for RNA: ENST00000615671.1

GABPB1-212, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

Gene GABPB1, Length 6,266 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-212ENST00000615671 DCAF8L2P0C7V8 631 aa33.12■■■□□ 2.89
GABPB1-212ENST00000615671 SUPT5HO00267 1087 aaKnown RBP30.88■■■□□ 2.53
GABPB1-212ENST00000615671 EHMT2Q96KQ7 1210 aa30.87■■■□□ 2.53
GABPB1-212ENST00000615671 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
GABPB1-212ENST00000615671 TTBK1Q5TCY1 1321 aaPredicted RBP29.72■■■□□ 2.35
GABPB1-212ENST00000615671 APLP2Q06481 763 aa29.58■■■□□ 2.33
GABPB1-212ENST00000615671 FAM9AQ8IZU1 332 aaPredicted RBP29.43■■■□□ 2.3
GABPB1-212ENST00000615671 RANGAP1P46060 587 aaPredicted RBP29.42■■■□□ 2.3
GABPB1-212ENST00000615671 PELP1Q8IZL8 1130 aaKnown RBP29.4■■■□□ 2.3
GABPB1-212ENST00000615671 NISCHQ9Y2I1 1504 aa29.13■■■□□ 2.25
GABPB1-212ENST00000615671 ATP1B4Q9UN42 357 aaPredicted RBP29.12■■■□□ 2.25
GABPB1-212ENST00000615671 PCGF6Q9BYE7 350 aa28.86■■■□□ 2.21
GABPB1-212ENST00000615671 ERICH6Q7L0X2 663 aa28.67■■■□□ 2.18
GABPB1-212ENST00000615671 CCER1Q8TC90 406 aaPredicted RBP28.39■■■□□ 2.14
GABPB1-212ENST00000615671 UBTFP17480 764 aaKnown RBP28.33■■■□□ 2.13
GABPB1-212ENST00000615671 TRIM41Q8WV44 630 aa28.31■■■□□ 2.12
GABPB1-212ENST00000615671 YTHDC1Q96MU7 727 aaKnown RBP28.23■■■□□ 2.11
GABPB1-212ENST00000615671 MYT1LQ9UL68 1186 aa28.22■■■□□ 2.11
GABPB1-212ENST00000615671 PPARGC1BQ86YN6 1023 aaKnown RBP28.19■■■□□ 2.1
GABPB1-212ENST00000615671 CENPBP07199 599 aaPredicted RBP28.1■■■□□ 2.09
GABPB1-212ENST00000615671 CHIC1Q5VXU3 224 aa28.08■■■□□ 2.09
GABPB1-212ENST00000615671 POLR3GLQ9BT43 218 aa27.99■■■□□ 2.07
GABPB1-212ENST00000615671 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.94■■■□□ 2.06
GABPB1-212ENST00000615671 HNRNPUL2Q1KMD3 747 aaKnown RBP27.94■■■□□ 2.06
GABPB1-212ENST00000615671 NEFLP07196 543 aa27.92■■■□□ 2.06
GABPB1-212ENST00000615671 CNGB1Q14028 1251 aaPredicted RBP27.9■■■□□ 2.06
GABPB1-212ENST00000615671 ITGAEP38570 1179 aa27.85■■■□□ 2.05
GABPB1-212ENST00000615671 ZEB1P37275 1124 aaPredicted RBP27.72■■■□□ 2.03
GABPB1-212ENST00000615671 SLC4A1APQ9BWU0 796 aaKnown RBP27.63■■■□□ 2.01
GABPB1-212ENST00000615671 MYT1Q01538 1121 aa27.62■■■□□ 2.01
GABPB1-212ENST00000615671 DAXXQ9UER7 740 aaPredicted RBP27.43■■□□□ 1.98
GABPB1-212ENST00000615671 LOC105371045A0A1W2PR82 267 aa27■■□□□ 1.91
GABPB1-212ENST00000615671 TRIM26Q12899 539 aaPredicted RBP26.96■■□□□ 1.91
GABPB1-212ENST00000615671 CLSPNQ9HAW4 1339 aa26.96■■□□□ 1.91
GABPB1-212ENST00000615671 FAM50AQ14320 339 aaKnown RBP26.89■■□□□ 1.89
GABPB1-212ENST00000615671 BCL11AQ9H165 835 aa26.87■■□□□ 1.89
GABPB1-212ENST00000615671 SLC24A1O60721 1099 aa26.85■■□□□ 1.89
GABPB1-212ENST00000615671 TRIM52Q96A61 297 aa26.84■■□□□ 1.89
GABPB1-212ENST00000615671 ZNF316A6NFI3 1004 aaPredicted RBP26.8■■□□□ 1.88
GABPB1-212ENST00000615671 HRCP23327 699 aa26.76■■□□□ 1.87
GABPB1-212ENST00000615671 FBLN2P98095 1184 aa26.75■■□□□ 1.87
GABPB1-212ENST00000615671 ZNF326Q5BKZ1 582 aaKnown RBP26.74■■□□□ 1.87
GABPB1-212ENST00000615671 NEUROD1Q13562 356 aa26.72■■□□□ 1.87
GABPB1-212ENST00000615671 PABPN1Q86U42 306 aaKnown RBP eCLIP26.7■■□□□ 1.86
GABPB1-212ENST00000615671 BCANQ96GW7 911 aa26.68■■□□□ 1.86
GABPB1-212ENST00000615671 ARID3CA6NKF2 412 aa26.56■■□□□ 1.84
GABPB1-212ENST00000615671 PLPPR3Q6T4P5 718 aa26.54■■□□□ 1.84
GABPB1-212ENST00000615671 RTL5Q5HYW3 569 aaPredicted RBP26.47■■□□□ 1.83
GABPB1-212ENST00000615671 ZBTB47Q9UFB7 747 aaPredicted RBP26.4■■□□□ 1.82
GABPB1-212ENST00000615671 DIEXFQ68CQ4 756 aaKnown RBP26.33■■□□□ 1.81
GABPB1-212ENST00000615671 ABCC9O60706 1549 aa26.3■■□□□ 1.8
GABPB1-212ENST00000615671 CANXP27824 592 aaKnown RBP26.29■■□□□ 1.8
GABPB1-212ENST00000615671 P3H3Q8IVL6 736 aa26.27■■□□□ 1.8
GABPB1-212ENST00000615671 ZNF777Q9ULD5 760 aaPredicted RBP26.18■■□□□ 1.78
GABPB1-212ENST00000615671 ANP32CO43423 234 aa26.1■■□□□ 1.77
GABPB1-212ENST00000615671 NEFMP07197 916 aa26.08■■□□□ 1.77
GABPB1-212ENST00000615671 CHGAP10645 457 aaKnown RBP26.01■■□□□ 1.75
GABPB1-212ENST00000615671 ESF1Q9H501 851 aaKnown RBP26.01■■□□□ 1.75
GABPB1-212ENST00000615671 STAG3Q9UJ98 1225 aa25.95■■□□□ 1.74
GABPB1-212ENST00000615671 CDK11AQ9UQ88 783 aaPredicted RBP25.9■■□□□ 1.74
GABPB1-212ENST00000615671 NPM2Q86SE8 214 aaKnown RBP25.87■■□□□ 1.73
GABPB1-212ENST00000615671 SCAF1Q9H7N4 1312 aaKnown RBP25.85■■□□□ 1.73
GABPB1-212ENST00000615671 SENP3Q9H4L4 574 aaPredicted RBP25.84■■□□□ 1.73
GABPB1-212ENST00000615671 PLEKHG5O94827 1062 aa25.83■■□□□ 1.73
GABPB1-212ENST00000615671 A0A0G2JS52 829 aa25.8■■□□□ 1.72
GABPB1-212ENST00000615671 GTF3C3Q9Y5Q9 886 aa25.79■■□□□ 1.72
GABPB1-212ENST00000615671 SALL2Q9Y467 1007 aaPredicted RBP25.71■■□□□ 1.71
GABPB1-212ENST00000615671 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.64■■□□□ 1.7
GABPB1-212ENST00000615671 ZBTB7CA1YPR0 619 aa25.64■■□□□ 1.69
GABPB1-212ENST00000615671 NPM1P06748 294 aaKnown RBP eCLIP25.57■■□□□ 1.68
GABPB1-212ENST00000615671 HSP90AA1P07900 732 aaKnown RBP25.55■■□□□ 1.68
GABPB1-212ENST00000615671 ANP32AP39687 249 aaKnown RBP25.5■■□□□ 1.67
GABPB1-212ENST00000615671 CHIC2Q9UKJ5 165 aa25.47■■□□□ 1.67
GABPB1-212ENST00000615671 FAM9BQ8IZU0 186 aa25.46■■□□□ 1.67
GABPB1-212ENST00000615671 C14orf37Q86TY3 774 aa25.41■■□□□ 1.66
GABPB1-212ENST00000615671 ARXQ96QS3 562 aa25.4■■□□□ 1.66
GABPB1-212ENST00000615671 KDM2AQ9Y2K7 1162 aa25.38■■□□□ 1.65
GABPB1-212ENST00000615671 FKBP8Q14318 412 aa25.32■■□□□ 1.64
GABPB1-212ENST00000615671 TONSLQ96HA7 1378 aa25.31■■□□□ 1.64
GABPB1-212ENST00000615671 CSRNP3Q8WYN3 585 aa25.3■■□□□ 1.64
GABPB1-212ENST00000615671 ANP32BQ92688 251 aaKnown RBP25.3■■□□□ 1.64
GABPB1-212ENST00000615671 HNRNPUQ00839 825 aaKnown RBP eCLIP25.29■■□□□ 1.64
GABPB1-212ENST00000615671 DDX10Q13206 875 aaKnown RBP25.25■■□□□ 1.63
GABPB1-212ENST00000615671 EIF5BO60841 1220 aaKnown RBP25.24■■□□□ 1.63
GABPB1-212ENST00000615671 UPF2Q9HAU5 1272 aaKnown RBP25.23■■□□□ 1.63
GABPB1-212ENST00000615671 WDR43Q15061 677 aaKnown RBP eCLIP25.18■■□□□ 1.62
GABPB1-212ENST00000615671 TULP1O00294 542 aaPredicted RBP25.14■■□□□ 1.62
GABPB1-212ENST00000615671 TMC1Q8TDI8 760 aa25.14■■□□□ 1.62
GABPB1-212ENST00000615671 HAP1P54257 671 aaPredicted RBP25.14■■□□□ 1.62
GABPB1-212ENST00000615671 KCNH8Q96L42 1107 aa25.14■■□□□ 1.62
GABPB1-212ENST00000615671 HIRIP3Q9BW71 556 aaPredicted RBP25.14■■□□□ 1.61
GABPB1-212ENST00000615671 SENP3-EIF4A1A0A087X0R7 540 aa25.13■■□□□ 1.61
GABPB1-212ENST00000615671 PPP1R15AO75807 674 aaPredicted RBP25.12■■□□□ 1.61
GABPB1-212ENST00000615671 NBR1Q14596 966 aa25.1■■□□□ 1.61
GABPB1-212ENST00000615671 ARID4BQ4LE39 1312 aaPredicted RBP25.09■■□□□ 1.61
GABPB1-212ENST00000615671 IRX6P78412 446 aaPredicted RBP25.09■■□□□ 1.61
GABPB1-212ENST00000615671 SCRIBQ14160 1630 aa25.06■■□□□ 1.6
GABPB1-212ENST00000615671 CHMP7Q8WUX9 453 aaPredicted RBP25.06■■□□□ 1.6
GABPB1-212ENST00000615671 ACIN1Q9UKV3 1341 aaKnown RBP25.03■■□□□ 1.6
GABPB1-212ENST00000615671 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms