RNA–Protein interactions for RNA: ENST00000614237.1

SENP3-EIF4A1-201, Transcript of SENP3-EIF4A1 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2 BASIC

Gene SENP3-EIF4A1, Length 3,519 nt, Biotype nonsense mediated decay.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1-201ENST00000614237 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.88□□□□□ -0.351e-323■■■□□ 14.8
SENP3-EIF4A1-201ENST00000614237 NIP7Q9Y221 180 aaKnown RBP eCLIP12.54□□□□□ -0.41e-323■■■□□ 14.6
SENP3-EIF4A1-201ENST00000614237 AATFQ9NY61 560 aaKnown RBP eCLIP12.39□□□□□ -0.431e-323■■■■□ 25.1
SENP3-EIF4A1-201ENST00000614237 DKC1O60832 514 aaKnown RBP eCLIP11.72□□□□□ -0.531e-323■■■■■ 31.9
SENP3-EIF4A1-201ENST00000614237 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.26□□□□□ -0.611e-323■■■□□ 16.1
SENP3-EIF4A1-201ENST00000614237 TRA2AQ13595 282 aaKnown RBP eCLIP9.66□□□□□ -0.865e-87■□□□□ 9.3
SENP3-EIF4A1-201ENST00000614237 SSBP05455 408 aaKnown RBP eCLIP12.08□□□□□ -0.479e-56■■■□□ 14.6
SENP3-EIF4A1-201ENST00000614237 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.29□□□□□ -0.63e-51■□□□□ 10
SENP3-EIF4A1-201ENST00000614237 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.14□□□□□ -0.635e-38■■□□□ 12.7
SENP3-EIF4A1-201ENST00000614237 SERBP1Q8NC51 408 aaKnown RBP eCLIP11□□□□□ -0.656e-20■■□□□ 11.6
SENP3-EIF4A1-201ENST00000614237 PABPC4Q13310 644 aaKnown RBP eCLIP11.81□□□□□ -0.522e-14■■■■□ 19.8
SENP3-EIF4A1-201ENST00000614237 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.64□□□□□ -0.715e-14■■■■■ 30.9
SENP3-EIF4A1-201ENST00000614237 NIPBLQ6KC79 2804 aaeCLIP7.74□□□□□ -1.171e-13■□□□□ 9.6
SENP3-EIF4A1-201ENST00000614237 SND1Q7KZF4 910 aaKnown RBP eCLIP12□□□□□ -0.497e-13■□□□□ 10
SENP3-EIF4A1-201ENST00000614237 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.12□□□□□ -0.799e-13■■□□□ 14.5
SENP3-EIF4A1-201ENST00000614237 GTF2F1P35269 517 aaKnown RBP eCLIP12.62□□□□□ -0.391e-12■■■□□ 17.1
SENP3-EIF4A1-201ENST00000614237 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.06□□□□□ -0.82e-11■■■■□ 25.1
SENP3-EIF4A1-201ENST00000614237 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.56□□□□□ -0.883e-11■■■■■ 29.2
SENP3-EIF4A1-201ENST00000614237 LARP4Q71RC2 724 aaKnown RBP eCLIP10.78□□□□□ -0.684e-11■■■■■ 31
SENP3-EIF4A1-201ENST00000614237 HNRNPMP52272 730 aaKnown RBP eCLIP15.03■□□□□ -07e-11■■■■□ 19.9
SENP3-EIF4A1-201ENST00000614237 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.33□□□□□ -0.448e-11■■□□□ 13.6
SENP3-EIF4A1-201ENST00000614237 EWSR1Q01844 656 aaKnown RBP eCLIP9.27□□□□□ -0.938e-11■■■■□ 21.5
SENP3-EIF4A1-201ENST00000614237 SF3B4Q15427 424 aaKnown RBP eCLIP10.68□□□□□ -0.79e-11■■■■■ 46.2
SENP3-EIF4A1-201ENST00000614237 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.5□□□□□ -0.572e-10■■■□□ 18.4
SENP3-EIF4A1-201ENST00000614237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.66□□□□□ -0.063e-10■■□□□ 11.7
SENP3-EIF4A1-201ENST00000614237 SF3B1O75533 1304 aaKnown RBP eCLIP11.25□□□□□ -0.614e-10■■■■■ 40.1
SENP3-EIF4A1-201ENST00000614237 TIA1P31483 386 aaKnown RBP eCLIP10.38□□□□□ -0.754e-10■■■□□ 14.8
SENP3-EIF4A1-201ENST00000614237 KHSRPQ92945 711 aaKnown RBP eCLIP11.27□□□□□ -0.66e-10■■■■■ 35.2
SENP3-EIF4A1-201ENST00000614237 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.83□□□□□ -0.516e-10■■□□□ 12.3
SENP3-EIF4A1-201ENST00000614237 G3BP1Q13283 466 aaKnown RBP eCLIP13.02□□□□□ -0.338e-10■■□□□ 14.1
SENP3-EIF4A1-201ENST00000614237 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.96□□□□□ -0.331e-9■■■■□ 25
SENP3-EIF4A1-201ENST00000614237 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.6□□□□□ -0.552e-9■■■□□ 17.3
SENP3-EIF4A1-201ENST00000614237 PRPF4O43172 522 aaKnown RBP eCLIP11.33□□□□□ -0.65e-9■■■■□ 20.8
SENP3-EIF4A1-201ENST00000614237 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.78□□□□□ -0.685e-9■■■■□ 21.8
SENP3-EIF4A1-201ENST00000614237 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.72□□□□□ -0.536e-9■■■■■ 163.7
SENP3-EIF4A1-201ENST00000614237 RBM15Q96T37 977 aaKnown RBP eCLIP11.31□□□□□ -0.68e-9■■■□□ 17.4
SENP3-EIF4A1-201ENST00000614237 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.52□□□□□ -1.058e-9■■■■□ 22.9
SENP3-EIF4A1-201ENST00000614237 NONOQ15233 471 aaKnown RBP eCLIP12.15□□□□□ -0.461e-8■■■■■ 39.3
SENP3-EIF4A1-201ENST00000614237 RPS3P23396 243 aaKnown RBP eCLIP10.74□□□□□ -0.691e-8■■■■□ 26.4
SENP3-EIF4A1-201ENST00000614237 U2AF1Q01081 240 aaKnown RBP eCLIP13.91□□□□□ -0.181e-8■■■■■ 28
SENP3-EIF4A1-201ENST00000614237 DDX3XO00571 662 aaKnown RBP eCLIP11.72□□□□□ -0.531e-8■■■■□ 23.1
SENP3-EIF4A1-201ENST00000614237 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.6□□□□□ -0.712e-8■□□□□ 10.5
SENP3-EIF4A1-201ENST00000614237 RBM22Q9NW64 420 aaKnown RBP eCLIP10.88□□□□□ -0.673e-8■■■■□ 23.3
SENP3-EIF4A1-201ENST00000614237 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.81□□□□□ -0.524e-8■■■■■ 50.8
SENP3-EIF4A1-201ENST00000614237 ZRANB2O95218 330 aaKnown RBP eCLIP12.14□□□□□ -0.474e-8■■■■□ 21.7
SENP3-EIF4A1-201ENST00000614237 TIAL1Q01085 375 aaKnown RBP eCLIP10.81□□□□□ -0.685e-8■■■□□ 16.5
SENP3-EIF4A1-201ENST00000614237 HNRNPCP07910 306 aaKnown RBP eCLIP11.17□□□□□ -0.625e-8■■■■□ 25.1
SENP3-EIF4A1-201ENST00000614237 RBM5P52756 815 aaKnown RBP eCLIP11.87□□□□□ -0.517e-8■■■■■ 28.3
SENP3-EIF4A1-201ENST00000614237 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.12□□□□□ -0.638e-8■■■□□ 17.7
SENP3-EIF4A1-201ENST00000614237 SF3A3Q12874 501 aaKnown RBP eCLIP12.18□□□□□ -0.468e-8■■■■□ 20.4
SENP3-EIF4A1-201ENST00000614237 FKBP4Q02790 459 aaKnown RBP eCLIP12.64□□□□□ -0.398e-8■■■□□ 18.8
SENP3-EIF4A1-201ENST00000614237 RBFOX2O43251 390 aaKnown RBP eCLIP9□□□□□ -0.979e-8■■■□□ 15.4
SENP3-EIF4A1-201ENST00000614237 U2AF2P26368 475 aaKnown RBP eCLIP12.91□□□□□ -0.341e-7■■■□□ 17.3
SENP3-EIF4A1-201ENST00000614237 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.69□□□□□ -0.541e-7■■■□□ 17.5
SENP3-EIF4A1-201ENST00000614237 EFTUD2Q15029 972 aaKnown RBP eCLIP11.26□□□□□ -0.611e-7■■■■□ 19.5
SENP3-EIF4A1-201ENST00000614237 LSM11P83369 360 aaKnown RBP eCLIP10.17□□□□□ -0.782e-7■■■■■ 29.7
SENP3-EIF4A1-201ENST00000614237 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.212e-7■■■■□ 20.2
SENP3-EIF4A1-201ENST00000614237 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.17□□□□□ -0.622e-7■■■□□ 18.5
SENP3-EIF4A1-201ENST00000614237 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.67□□□□□ -0.542e-7■■□□□ 11.4
SENP3-EIF4A1-201ENST00000614237 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.373e-7■■□□□ 11.6
SENP3-EIF4A1-201ENST00000614237 PUM1Q14671 1186 aaKnown RBP eCLIP10.22□□□□□ -0.773e-7■□□□□ 10.8
SENP3-EIF4A1-201ENST00000614237 FUSP35637 526 aaKnown RBP eCLIP7.17□□□□□ -1.263e-7■■■■□ 19.5
SENP3-EIF4A1-201ENST00000614237 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.68□□□□□ -0.73e-7■□□□□ 8.5
SENP3-EIF4A1-201ENST00000614237 PCBP2Q15366 365 aaKnown RBP eCLIP10.7□□□□□ -0.73e-7■■■□□ 17.4
SENP3-EIF4A1-201ENST00000614237 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.95□□□□□ -0.664e-7■■■□□ 17.8
SENP3-EIF4A1-201ENST00000614237 YBX3P16989 372 aaKnown RBP eCLIP11.25□□□□□ -0.614e-7■□□□□ 11
SENP3-EIF4A1-201ENST00000614237 FMR1Q06787 632 aaKnown RBP eCLIP12.23□□□□□ -0.454e-7■■□□□ 12.7
SENP3-EIF4A1-201ENST00000614237 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.46□□□□□ -0.415e-7■■■□□ 15.3
SENP3-EIF4A1-201ENST00000614237 DDX21Q9NR30 783 aaKnown RBP eCLIP13.2□□□□□ -0.35e-7■□□□□ 10.1
SENP3-EIF4A1-201ENST00000614237 NCBP2P52298 156 aaKnown RBP eCLIP10.13□□□□□ -0.795e-7■■□□□ 14.4
SENP3-EIF4A1-201ENST00000614237 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.31□□□□□ -0.765e-7■■■□□ 18.4
SENP3-EIF4A1-201ENST00000614237 FTOQ9C0B1 505 aaKnown RBP eCLIP12.56□□□□□ -0.46e-7■□□□□ 10.3
SENP3-EIF4A1-201ENST00000614237 SMNDC1O75940 238 aaKnown RBP eCLIP11.38□□□□□ -0.596e-7■■■■□ 26.7
SENP3-EIF4A1-201ENST00000614237 SFPQP23246 707 aaKnown RBP eCLIP12.39□□□□□ -0.436e-7■■■■□ 22.5
SENP3-EIF4A1-201ENST00000614237 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.88□□□□□ -0.516e-7■■■■□ 26.5
SENP3-EIF4A1-201ENST00000614237 EIF4G2P78344 907 aaKnown RBP eCLIP15.16■□□□□ 0.026e-7■□□□□ 9.9
SENP3-EIF4A1-201ENST00000614237 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.2■□□□□ 0.186e-7■■□□□ 14.4
SENP3-EIF4A1-201ENST00000614237 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.19□□□□□ -0.627e-7■■■■■ 43.5
SENP3-EIF4A1-201ENST00000614237 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.89□□□□□ -0.678e-7■■□□□ 13.6
SENP3-EIF4A1-201ENST00000614237 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.71□□□□□ -0.79e-7■■■□□ 17.3
SENP3-EIF4A1-201ENST00000614237 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.69□□□□□ -0.541e-6■■□□□ 13.7
SENP3-EIF4A1-201ENST00000614237 DDX42Q86XP3 938 aaKnown RBP eCLIP11.81□□□□□ -0.521e-6■■■□□ 15.1
SENP3-EIF4A1-201ENST00000614237 XRCC6P12956 609 aaKnown RBP eCLIP13.57□□□□□ -0.241e-6■■■□□ 17.2
SENP3-EIF4A1-201ENST00000614237 PPIGQ13427 754 aaKnown RBP eCLIP10.44□□□□□ -0.741e-6■■■□□ 18.4
SENP3-EIF4A1-201ENST00000614237 DDX6P26196 483 aaKnown RBP eCLIP10.62□□□□□ -0.711e-6■■■■■ 28.1
SENP3-EIF4A1-201ENST00000614237 CDC40O60508 579 aaKnown RBP eCLIP9.82□□□□□ -0.842e-6■■■□□ 16.1
SENP3-EIF4A1-201ENST00000614237 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.25■□□□□ 0.032e-6■■■□□ 15.2
SENP3-EIF4A1-201ENST00000614237 SUB1P53999 127 aaKnown RBP eCLIP8.7□□□□□ -1.022e-6■■■□□ 14.7
SENP3-EIF4A1-201ENST00000614237 FXR2P51116 673 aaKnown RBP eCLIP12.16□□□□□ -0.462e-6■■□□□ 14
SENP3-EIF4A1-201ENST00000614237 NOLC1Q14978 699 aaKnown RBP eCLIP12.87□□□□□ -0.353e-6■■■□□ 15.3
SENP3-EIF4A1-201ENST00000614237 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.353e-6■■■■□ 21.9
SENP3-EIF4A1-201ENST00000614237 TROVE2P10155 538 aaKnown RBP eCLIP11.22□□□□□ -0.614e-6■■□□□ 11.8
SENP3-EIF4A1-201ENST00000614237 TAF15Q92804 592 aaKnown RBP eCLIP9.02□□□□□ -0.975e-6■□□□□ 9.3
SENP3-EIF4A1-201ENST00000614237 NKRFO15226 690 aaKnown RBP eCLIP11.89□□□□□ -0.515e-6■□□□□ 8.5
SENP3-EIF4A1-201ENST00000614237 AARSP49588 968 aaKnown RBP eCLIP11.85□□□□□ -0.517e-6■■□□□ 13.7
SENP3-EIF4A1-201ENST00000614237 GPKOWQ92917 476 aaPredicted RBP eCLIP12.14□□□□□ -0.478e-6■■■□□ 18.6
Retrieved 96 of 96 RNA–protein pairs in 8.2 ms