RNA–Protein interactions for RNA: ENST00000605814.1

HMGB1P50-201, Transcript of high mobility group box 1 pseudogene 50, humanhuman

BASIC

Gene HMGB1P50, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P50-201ENST00000605814 AEBP2Q6ZN18 517 aaPredicted RBP17.84■□□□□ 0.45
HMGB1P50-201ENST00000605814 CHIC1Q5VXU3 224 aa16.99■□□□□ 0.31
HMGB1P50-201ENST00000605814 SENP3Q9H4L4 574 aaPredicted RBP15.37■□□□□ 0.05
HMGB1P50-201ENST00000605814 PHF23Q9BUL5 403 aaPredicted RBP15.11■□□□□ 0.01
HMGB1P50-201ENST00000605814 FOXD1Q16676 465 aa14.24□□□□□ -0.13
HMGB1P50-201ENST00000605814 PLPPR3Q6T4P5 718 aa13.65□□□□□ -0.22
HMGB1P50-201ENST00000605814 MSH5O43196 834 aa13.44□□□□□ -0.26
HMGB1P50-201ENST00000605814 PIAS4Q8N2W9 510 aaPredicted RBP13.42□□□□□ -0.26
HMGB1P50-201ENST00000605814 ADRA2BP18089 450 aa13.27□□□□□ -0.29
HMGB1P50-201ENST00000605814 PPP6R1Q9UPN7 881 aa13.24□□□□□ -0.29
HMGB1P50-201ENST00000605814 POTEDQ86YR6 584 aa13.07□□□□□ -0.32
HMGB1P50-201ENST00000605814 SCAF1Q9H7N4 1312 aaKnown RBP12.28□□□□□ -0.44
HMGB1P50-201ENST00000605814 MAPK8IP2Q13387 824 aaPredicted RBP12.17□□□□□ -0.46
HMGB1P50-201ENST00000605814 DMRT2Q9Y5R5 561 aa12.13□□□□□ -0.47
HMGB1P50-201ENST00000605814 PPP4R3CPQ6ZMV5 832 aa11.93□□□□□ -0.5
HMGB1P50-201ENST00000605814 DCAF8L1A6NGE4 600 aa11.82□□□□□ -0.52
HMGB1P50-201ENST00000605814 CNKSR2Q8WXI2 1034 aa11.73□□□□□ -0.53
HMGB1P50-201ENST00000605814 HOXD11P31277 338 aaPredicted RBP11.64□□□□□ -0.55
HMGB1P50-201ENST00000605814 RNF216Q9NWF9 866 aaPredicted RBP11.6□□□□□ -0.55
HMGB1P50-201ENST00000605814 CACNB1Q02641 598 aaPredicted RBP11.58□□□□□ -0.56
HMGB1P50-201ENST00000605814 NCBP3Q53F19 620 aaKnown RBP11.56□□□□□ -0.56
HMGB1P50-201ENST00000605814 RNF39Q9H2S5 420 aa11.38□□□□□ -0.59
HMGB1P50-201ENST00000605814 NPM3O75607 178 aaKnown RBP11.28□□□□□ -0.6
HMGB1P50-201ENST00000605814 C1QBPQ07021 282 aaKnown RBP11.27□□□□□ -0.61
HMGB1P50-201ENST00000605814 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.25□□□□□ -0.61
HMGB1P50-201ENST00000605814 DNAJC5BQ9UF47 199 aa11.23□□□□□ -0.61
HMGB1P50-201ENST00000605814 KCNA4P22459 653 aa11.04□□□□□ -0.64
HMGB1P50-201ENST00000605814 U3KPZ7 1027 aaPredicted RBP10.89□□□□□ -0.67
HMGB1P50-201ENST00000605814 CAPN15O75808 1086 aa10.85□□□□□ -0.67
HMGB1P50-201ENST00000605814 APLP2Q06481 763 aa10.76□□□□□ -0.69
HMGB1P50-201ENST00000605814 SPINK5Q9NQ38 1064 aaPredicted RBP10.74□□□□□ -0.69
HMGB1P50-201ENST00000605814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.71□□□□□ -0.69
HMGB1P50-201ENST00000605814 SLC4A2P04920 1241 aa10.71□□□□□ -0.69
HMGB1P50-201ENST00000605814 HNRNPUL2Q1KMD3 747 aaKnown RBP10.71□□□□□ -0.69
HMGB1P50-201ENST00000605814 TRHP20396 242 aaPredicted RBP10.66□□□□□ -0.7
HMGB1P50-201ENST00000605814 DSG3P32926 999 aa10.66□□□□□ -0.7
HMGB1P50-201ENST00000605814 ZNF219Q9P2Y4 722 aaPredicted RBP10.63□□□□□ -0.71
HMGB1P50-201ENST00000605814 SAMD1Q6SPF0 538 aaPredicted RBP10.62□□□□□ -0.71
HMGB1P50-201ENST00000605814 ABCB7O75027 752 aa10.56□□□□□ -0.72
HMGB1P50-201ENST00000605814 MYCNP04198 464 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P50-201ENST00000605814 SLC4A1APQ9BWU0 796 aaKnown RBP10.49□□□□□ -0.73
HMGB1P50-201ENST00000605814 FOXD4L1Q9NU39 408 aa10.36□□□□□ -0.75
HMGB1P50-201ENST00000605814 POLA2Q14181 598 aa10.31□□□□□ -0.76
HMGB1P50-201ENST00000605814 RBM42Q9BTD8 480 aaKnown RBP10.29□□□□□ -0.76
HMGB1P50-201ENST00000605814 POTEHQ6S545 545 aa10.28□□□□□ -0.76
HMGB1P50-201ENST00000605814 ZBTB12Q9Y330 459 aaPredicted RBP10.18□□□□□ -0.78
HMGB1P50-201ENST00000605814 ATF5Q9Y2D1 282 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P50-201ENST00000605814 ZBTB22O15209 634 aa10.07□□□□□ -0.8
HMGB1P50-201ENST00000605814 ATXN8OSP0DMR3 200 aa10.02□□□□□ -0.81
HMGB1P50-201ENST00000605814 CHRDL2Q6WN34 429 aa10.01□□□□□ -0.81
HMGB1P50-201ENST00000605814 OSCARQ8IYS5 282 aa10□□□□□ -0.81
HMGB1P50-201ENST00000605814 AKT1S1Q96B36 256 aa9.99□□□□□ -0.81
HMGB1P50-201ENST00000605814 FBLN2P98095 1184 aa9.94□□□□□ -0.82
HMGB1P50-201ENST00000605814 REM2Q8IYK8 340 aaPredicted RBP9.87□□□□□ -0.83
HMGB1P50-201ENST00000605814 SPDYE2BA6NHP3 402 aa9.79□□□□□ -0.84
HMGB1P50-201ENST00000605814 SPDYE6P0CI01 402 aa9.79□□□□□ -0.84
HMGB1P50-201ENST00000605814 SPDYE2Q495Y8 402 aa9.79□□□□□ -0.84
HMGB1P50-201ENST00000605814 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
HMGB1P50-201ENST00000605814 PIP4P2Q8N4L2 257 aa9.74□□□□□ -0.85
HMGB1P50-201ENST00000605814 ZNF692Q9BU19 519 aaPredicted RBP9.71□□□□□ -0.86
HMGB1P50-201ENST00000605814 CLEC11AQ9Y240 323 aa9.7□□□□□ -0.86
HMGB1P50-201ENST00000605814 HAX1O00165 279 aa9.67□□□□□ -0.86
HMGB1P50-201ENST00000605814 SPDYE1Q8NFV5 336 aaPredicted RBP9.67□□□□□ -0.86
HMGB1P50-201ENST00000605814 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
HMGB1P50-201ENST00000605814 FXR2P51116 673 aaKnown RBP eCLIP9.65□□□□□ -0.86
HMGB1P50-201ENST00000605814 SP7Q8TDD2 431 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P50-201ENST00000605814 EHMT2Q96KQ7 1210 aa9.64□□□□□ -0.87
HMGB1P50-201ENST00000605814 CSRNP3Q8WYN3 585 aa9.63□□□□□ -0.87
HMGB1P50-201ENST00000605814 SSUH2Q9Y2M2 353 aa9.59□□□□□ -0.87
HMGB1P50-201ENST00000605814 PRKAR2AP13861 404 aaKnown RBP9.57□□□□□ -0.88
HMGB1P50-201ENST00000605814 PABPN1Q86U42 306 aaKnown RBP eCLIP9.54□□□□□ -0.88
HMGB1P50-201ENST00000605814 PRR29P0C7W0 189 aa9.51□□□□□ -0.89
HMGB1P50-201ENST00000605814 CHADLQ6NUI6 762 aa9.43□□□□□ -0.9
HMGB1P50-201ENST00000605814 EVX2Q03828 476 aa9.37□□□□□ -0.91
HMGB1P50-201ENST00000605814 C19orf67A6NJJ6 358 aa9.34□□□□□ -0.91
HMGB1P50-201ENST00000605814 SPDYE4A6NLX3 237 aa9.33□□□□□ -0.92
HMGB1P50-201ENST00000605814 STAG3Q9UJ98 1225 aa9.32□□□□□ -0.92
HMGB1P50-201ENST00000605814 CD44P16070 742 aaKnown RBP9.28□□□□□ -0.92
HMGB1P50-201ENST00000605814 FARP1Q9Y4F1 1045 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P50-201ENST00000605814 GABBR2O75899 941 aa9.24□□□□□ -0.93
HMGB1P50-201ENST00000605814 PAK3O75914 559 aaPredicted RBP9.17□□□□□ -0.94
HMGB1P50-201ENST00000605814 CREBZFQ9NS37 354 aa9.15□□□□□ -0.94
HMGB1P50-201ENST00000605814 ZRANB1Q9UGI0 708 aa9.15□□□□□ -0.94
HMGB1P50-201ENST00000605814 CLCN6P51797 869 aa9.14□□□□□ -0.95
HMGB1P50-201ENST00000605814 NPM1P06748 294 aaKnown RBP eCLIP9.12□□□□□ -0.95
HMGB1P50-201ENST00000605814 DCBLD2Q96PD2 775 aa9.1□□□□□ -0.95
HMGB1P50-201ENST00000605814 ZNF579Q8NAF0 562 aaKnown RBP9.07□□□□□ -0.96
HMGB1P50-201ENST00000605814 PLEKHG5O94827 1062 aa9.05□□□□□ -0.96
HMGB1P50-201ENST00000605814 LHX8Q68G74 356 aa9.05□□□□□ -0.96
HMGB1P50-201ENST00000605814 PHF12Q96QT6 1004 aa8.97□□□□□ -0.97
HMGB1P50-201ENST00000605814 GALR2O43603 387 aaPredicted RBP8.96□□□□□ -0.98
HMGB1P50-201ENST00000605814 POTEIP0CG38 1075 aa8.96□□□□□ -0.98
HMGB1P50-201ENST00000605814 MIER1Q8N108 512 aa8.94□□□□□ -0.98
HMGB1P50-201ENST00000605814 PROM2Q8N271 834 aa8.94□□□□□ -0.98
HMGB1P50-201ENST00000605814 MNX1P50219 401 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P50-201ENST00000605814 TSPYL2Q9H2G4 693 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P50-201ENST00000605814 PLCD3Q8N3E9 789 aa8.91□□□□□ -0.98
HMGB1P50-201ENST00000605814 FKBP8Q14318 412 aa8.85□□□□□ -0.99
HMGB1P50-201ENST00000605814 MS4A3Q96HJ5 214 aa8.85□□□□□ -0.99
HMGB1P50-201ENST00000605814 ZBTB47Q9UFB7 747 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms