RNA–Protein interactions for RNA: ENST00000602888.5

UBE2E3-212, Transcript of ubiquitin conjugating enzyme E2 E3, humanhuman

TSL 2

Gene UBE2E3, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2E3-212ENST00000602888 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
UBE2E3-212ENST00000602888 CHIC1Q5VXU3 224 aa24.36■■□□□ 1.49
UBE2E3-212ENST00000602888 PHF23Q9BUL5 403 aaPredicted RBP21.41■■□□□ 1.02
UBE2E3-212ENST00000602888 SENP3Q9H4L4 574 aaPredicted RBP21.04■□□□□ 0.96
UBE2E3-212ENST00000602888 PLPPR3Q6T4P5 718 aa19.86■□□□□ 0.77
UBE2E3-212ENST00000602888 FOXD1Q16676 465 aa19.48■□□□□ 0.71
UBE2E3-212ENST00000602888 ADRA2BP18089 450 aa18.85■□□□□ 0.61
UBE2E3-212ENST00000602888 PPP6R1Q9UPN7 881 aa18.84■□□□□ 0.61
UBE2E3-212ENST00000602888 PIAS4Q8N2W9 510 aaPredicted RBP18.43■□□□□ 0.54
UBE2E3-212ENST00000602888 MSH5O43196 834 aa17.94■□□□□ 0.46
UBE2E3-212ENST00000602888 PPP4R3CPQ6ZMV5 832 aa17.51■□□□□ 0.39
UBE2E3-212ENST00000602888 SCAF1Q9H7N4 1312 aaKnown RBP17.28■□□□□ 0.36
UBE2E3-212ENST00000602888 KCNA4P22459 653 aa17.27■□□□□ 0.36
UBE2E3-212ENST00000602888 NCBP3Q53F19 620 aaKnown RBP17.12■□□□□ 0.33
UBE2E3-212ENST00000602888 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
UBE2E3-212ENST00000602888 CNKSR2Q8WXI2 1034 aa16.99■□□□□ 0.31
UBE2E3-212ENST00000602888 NPM3O75607 178 aaKnown RBP16.83■□□□□ 0.28
UBE2E3-212ENST00000602888 DMRT2Q9Y5R5 561 aa16.8■□□□□ 0.28
UBE2E3-212ENST00000602888 RNF216Q9NWF9 866 aaPredicted RBP16.63■□□□□ 0.25
UBE2E3-212ENST00000602888 HOXD11P31277 338 aaPredicted RBP16.51■□□□□ 0.23
UBE2E3-212ENST00000602888 SLC4A1APQ9BWU0 796 aaKnown RBP16.49■□□□□ 0.23
UBE2E3-212ENST00000602888 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
UBE2E3-212ENST00000602888 EHMT2Q96KQ7 1210 aa16.19■□□□□ 0.18
UBE2E3-212ENST00000602888 DCAF8L1A6NGE4 600 aa16.09■□□□□ 0.17
UBE2E3-212ENST00000602888 POTEDQ86YR6 584 aa16.05■□□□□ 0.16
UBE2E3-212ENST00000602888 CSRNP3Q8WYN3 585 aa15.91■□□□□ 0.14
UBE2E3-212ENST00000602888 ZBTB22O15209 634 aa15.88■□□□□ 0.13
UBE2E3-212ENST00000602888 FOXD4L1Q9NU39 408 aa15.87■□□□□ 0.13
UBE2E3-212ENST00000602888 SLC4A2P04920 1241 aa15.86■□□□□ 0.13
UBE2E3-212ENST00000602888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.75■□□□□ 0.11
UBE2E3-212ENST00000602888 MYCNP04198 464 aaPredicted RBP15.58■□□□□ 0.08
UBE2E3-212ENST00000602888 U3KPZ7 1027 aaPredicted RBP15.5■□□□□ 0.07
UBE2E3-212ENST00000602888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
UBE2E3-212ENST00000602888 HNRNPUL2Q1KMD3 747 aaKnown RBP15.39■□□□□ 0.05
UBE2E3-212ENST00000602888 RNF39Q9H2S5 420 aa15.37■□□□□ 0.05
UBE2E3-212ENST00000602888 SAMD1Q6SPF0 538 aaPredicted RBP15.34■□□□□ 0.05
UBE2E3-212ENST00000602888 ATXN8OSP0DMR3 200 aa15.3■□□□□ 0.04
UBE2E3-212ENST00000602888 APLP2Q06481 763 aa15.2■□□□□ 0.02
UBE2E3-212ENST00000602888 C1QBPQ07021 282 aaKnown RBP15.2■□□□□ 0.02
UBE2E3-212ENST00000602888 ATF5Q9Y2D1 282 aaPredicted RBP15.12■□□□□ 0.01
UBE2E3-212ENST00000602888 SPINK5Q9NQ38 1064 aaPredicted RBP15.02■□□□□ -0
UBE2E3-212ENST00000602888 CAPN15O75808 1086 aa14.97□□□□□ -0.01
UBE2E3-212ENST00000602888 ZNF219Q9P2Y4 722 aaPredicted RBP14.96□□□□□ -0.01
UBE2E3-212ENST00000602888 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
UBE2E3-212ENST00000602888 CACNB1Q02641 598 aaPredicted RBP14.87□□□□□ -0.03
UBE2E3-212ENST00000602888 POLA2Q14181 598 aa14.71□□□□□ -0.05
UBE2E3-212ENST00000602888 ABCB7O75027 752 aa14.69□□□□□ -0.06
UBE2E3-212ENST00000602888 DSG3P32926 999 aa14.67□□□□□ -0.06
UBE2E3-212ENST00000602888 FBLN2P98095 1184 aa14.52□□□□□ -0.09
UBE2E3-212ENST00000602888 ZBTB12Q9Y330 459 aaPredicted RBP14.52□□□□□ -0.09
UBE2E3-212ENST00000602888 MKRN4PQ13434 485 aaPredicted RBP14.47□□□□□ -0.09
UBE2E3-212ENST00000602888 FKBP8Q14318 412 aa14.4□□□□□ -0.1
UBE2E3-212ENST00000602888 SPDYE4A6NLX3 237 aa14.25□□□□□ -0.13
UBE2E3-212ENST00000602888 OSCARQ8IYS5 282 aa14.23□□□□□ -0.13
UBE2E3-212ENST00000602888 SPDYE2BA6NHP3 402 aa14.13□□□□□ -0.15
UBE2E3-212ENST00000602888 SPDYE6P0CI01 402 aa14.13□□□□□ -0.15
UBE2E3-212ENST00000602888 SPDYE2Q495Y8 402 aa14.13□□□□□ -0.15
UBE2E3-212ENST00000602888 ZNF692Q9BU19 519 aaPredicted RBP14.08□□□□□ -0.16
UBE2E3-212ENST00000602888 PROM2Q8N271 834 aa14.02□□□□□ -0.17
UBE2E3-212ENST00000602888 SSUH2Q9Y2M2 353 aa14.02□□□□□ -0.17
UBE2E3-212ENST00000602888 RBM42Q9BTD8 480 aaKnown RBP14.01□□□□□ -0.17
UBE2E3-212ENST00000602888 PABPN1Q86U42 306 aaKnown RBP eCLIP13.9□□□□□ -0.18
UBE2E3-212ENST00000602888 FBXO3Q9UK99 471 aa13.86□□□□□ -0.19
UBE2E3-212ENST00000602888 AKT1S1Q96B36 256 aa13.85□□□□□ -0.19
UBE2E3-212ENST00000602888 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
UBE2E3-212ENST00000602888 STAG3Q9UJ98 1225 aa13.71□□□□□ -0.21
UBE2E3-212ENST00000602888 SPDYE1Q8NFV5 336 aaPredicted RBP13.67□□□□□ -0.22
UBE2E3-212ENST00000602888 VASPP50552 380 aaPredicted RBP13.66□□□□□ -0.22
UBE2E3-212ENST00000602888 CLEC11AQ9Y240 323 aa13.59□□□□□ -0.23
UBE2E3-212ENST00000602888 PITPNM1O00562 1244 aa13.56□□□□□ -0.24
UBE2E3-212ENST00000602888 PRR29P0C7W0 189 aa13.5□□□□□ -0.25
UBE2E3-212ENST00000602888 PLCD3Q8N3E9 789 aa13.5□□□□□ -0.25
UBE2E3-212ENST00000602888 MIER1Q8N108 512 aa13.48□□□□□ -0.25
UBE2E3-212ENST00000602888 IFNLR1Q8IU57 520 aaPredicted RBP13.46□□□□□ -0.25
UBE2E3-212ENST00000602888 PLEKHG5O94827 1062 aa13.45□□□□□ -0.26
UBE2E3-212ENST00000602888 AMER1Q5JTC6 1135 aaPredicted RBP13.4□□□□□ -0.26
UBE2E3-212ENST00000602888 KLHL34Q8N239 644 aa13.4□□□□□ -0.26
UBE2E3-212ENST00000602888 CHRDL2Q6WN34 429 aa13.35□□□□□ -0.27
UBE2E3-212ENST00000602888 CREBZFQ9NS37 354 aa13.35□□□□□ -0.27
UBE2E3-212ENST00000602888 ZBTB47Q9UFB7 747 aaPredicted RBP13.35□□□□□ -0.27
UBE2E3-212ENST00000602888 RTN4Q9NQC3 1192 aaKnown RBP13.34□□□□□ -0.27
UBE2E3-212ENST00000602888 SPOCK2Q92563 424 aa13.3□□□□□ -0.28
UBE2E3-212ENST00000602888 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.29
UBE2E3-212ENST00000602888 CHADLQ6NUI6 762 aa13.23□□□□□ -0.29
UBE2E3-212ENST00000602888 PRKAR2AP13861 404 aaKnown RBP13.21□□□□□ -0.29
UBE2E3-212ENST00000602888 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
UBE2E3-212ENST00000602888 PIP4P2Q8N4L2 257 aa13.21□□□□□ -0.29
UBE2E3-212ENST00000602888 NPM1P06748 294 aaKnown RBP eCLIP13.16□□□□□ -0.3
UBE2E3-212ENST00000602888 FARP1Q9Y4F1 1045 aaPredicted RBP13.14□□□□□ -0.31
UBE2E3-212ENST00000602888 NUBP1P53384 320 aa13.11□□□□□ -0.31
UBE2E3-212ENST00000602888 PKD2Q13563 968 aa13.07□□□□□ -0.32
UBE2E3-212ENST00000602888 CIZ1Q9ULV3 898 aaPredicted RBP13.07□□□□□ -0.32
UBE2E3-212ENST00000602888 FAM212AQ96EL1 285 aa13.05□□□□□ -0.32
UBE2E3-212ENST00000602888 GSE1Q14687 1217 aa13.03□□□□□ -0.32
UBE2E3-212ENST00000602888 RASEFQ8IZ41 740 aa13.03□□□□□ -0.32
UBE2E3-212ENST00000602888 DCAF8Q5TAQ9 597 aa13.01□□□□□ -0.33
UBE2E3-212ENST00000602888 ECM2O94769 699 aaPredicted RBP12.98□□□□□ -0.33
UBE2E3-212ENST00000602888 TRIM41Q8WV44 630 aa12.96□□□□□ -0.33
UBE2E3-212ENST00000602888 TSPYL2Q9H2G4 693 aaPredicted RBP12.93□□□□□ -0.34
UBE2E3-212ENST00000602888 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms