RNA–Protein interactions for RNA: ENST00000589076.5

SMAD4-207, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-207ENST00000589076 AEBP2Q6ZN18 517 aaPredicted RBP23.68■■□□□ 1.38
SMAD4-207ENST00000589076 CHIC1Q5VXU3 224 aa22.58■■□□□ 1.21
SMAD4-207ENST00000589076 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
SMAD4-207ENST00000589076 PHF23Q9BUL5 403 aaPredicted RBP20.06■□□□□ 0.8
SMAD4-207ENST00000589076 FOXD1Q16676 465 aa18.89■□□□□ 0.61
SMAD4-207ENST00000589076 PLPPR3Q6T4P5 718 aa18.13■□□□□ 0.49
SMAD4-207ENST00000589076 MSH5O43196 834 aa17.85■□□□□ 0.45
SMAD4-207ENST00000589076 PIAS4Q8N2W9 510 aaPredicted RBP17.75■□□□□ 0.43
SMAD4-207ENST00000589076 ADRA2BP18089 450 aa17.59■□□□□ 0.41
SMAD4-207ENST00000589076 PPP6R1Q9UPN7 881 aa17.58■□□□□ 0.4
SMAD4-207ENST00000589076 POTEDQ86YR6 584 aa17.32■□□□□ 0.36
SMAD4-207ENST00000589076 SCAF1Q9H7N4 1312 aaKnown RBP16.33■□□□□ 0.2
SMAD4-207ENST00000589076 MAPK8IP2Q13387 824 aaPredicted RBP16.13■□□□□ 0.17
SMAD4-207ENST00000589076 DMRT2Q9Y5R5 561 aa16.12■□□□□ 0.17
SMAD4-207ENST00000589076 PPP4R3CPQ6ZMV5 832 aa15.83■□□□□ 0.12
SMAD4-207ENST00000589076 CNKSR2Q8WXI2 1034 aa15.58■□□□□ 0.08
SMAD4-207ENST00000589076 DCAF8L1A6NGE4 600 aa15.57■□□□□ 0.08
SMAD4-207ENST00000589076 HOXD11P31277 338 aaPredicted RBP15.5■□□□□ 0.07
SMAD4-207ENST00000589076 RNF216Q9NWF9 866 aaPredicted RBP15.44■□□□□ 0.06
SMAD4-207ENST00000589076 NCBP3Q53F19 620 aaKnown RBP15.36■□□□□ 0.05
SMAD4-207ENST00000589076 CACNB1Q02641 598 aaPredicted RBP15.32■□□□□ 0.04
SMAD4-207ENST00000589076 RNF39Q9H2S5 420 aa15.13■□□□□ 0.01
SMAD4-207ENST00000589076 DNAJC5BQ9UF47 199 aa15.04■□□□□ -0
SMAD4-207ENST00000589076 C1QBPQ07021 282 aaKnown RBP14.99□□□□□ -0.01
SMAD4-207ENST00000589076 NPM3O75607 178 aaKnown RBP14.95□□□□□ -0.02
SMAD4-207ENST00000589076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.89□□□□□ -0.033e-6■■□□□ 11.7
SMAD4-207ENST00000589076 KCNA4P22459 653 aa14.63□□□□□ -0.07
SMAD4-207ENST00000589076 U3KPZ7 1027 aaPredicted RBP14.44□□□□□ -0.1
SMAD4-207ENST00000589076 CAPN15O75808 1086 aa14.33□□□□□ -0.12
SMAD4-207ENST00000589076 APLP2Q06481 763 aa14.3□□□□□ -0.12
SMAD4-207ENST00000589076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.24□□□□□ -0.13
SMAD4-207ENST00000589076 HNRNPUL2Q1KMD3 747 aaKnown RBP14.24□□□□□ -0.13
SMAD4-207ENST00000589076 SLC4A2P04920 1241 aa14.23□□□□□ -0.13
SMAD4-207ENST00000589076 SPINK5Q9NQ38 1064 aaPredicted RBP14.22□□□□□ -0.13
SMAD4-207ENST00000589076 DSG3P32926 999 aa14.15□□□□□ -0.14
SMAD4-207ENST00000589076 ZNF219Q9P2Y4 722 aaPredicted RBP14.11□□□□□ -0.15
SMAD4-207ENST00000589076 SAMD1Q6SPF0 538 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-207ENST00000589076 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
SMAD4-207ENST00000589076 MYCNP04198 464 aaPredicted RBP13.93□□□□□ -0.18
SMAD4-207ENST00000589076 ABCB7O75027 752 aa13.92□□□□□ -0.18
SMAD4-207ENST00000589076 SLC4A1APQ9BWU0 796 aaKnown RBP13.9□□□□□ -0.18
SMAD4-207ENST00000589076 FOXD4L1Q9NU39 408 aa13.75□□□□□ -0.21
SMAD4-207ENST00000589076 POLA2Q14181 598 aa13.67□□□□□ -0.22
SMAD4-207ENST00000589076 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
SMAD4-207ENST00000589076 POTEHQ6S545 545 aa13.62□□□□□ -0.23
SMAD4-207ENST00000589076 ZBTB12Q9Y330 459 aaPredicted RBP13.52□□□□□ -0.25
SMAD4-207ENST00000589076 ATF5Q9Y2D1 282 aaPredicted RBP13.44□□□□□ -0.26
SMAD4-207ENST00000589076 ZBTB22O15209 634 aa13.37□□□□□ -0.27
SMAD4-207ENST00000589076 ATXN8OSP0DMR3 200 aa13.37□□□□□ -0.27
SMAD4-207ENST00000589076 CHRDL2Q6WN34 429 aa13.28□□□□□ -0.28
SMAD4-207ENST00000589076 AKT1S1Q96B36 256 aa13.28□□□□□ -0.28
SMAD4-207ENST00000589076 OSCARQ8IYS5 282 aa13.2□□□□□ -0.3
SMAD4-207ENST00000589076 FBLN2P98095 1184 aa13.16□□□□□ -0.3
SMAD4-207ENST00000589076 REM2Q8IYK8 340 aaPredicted RBP13.1□□□□□ -0.31
SMAD4-207ENST00000589076 SPDYE2BA6NHP3 402 aa13.02□□□□□ -0.33
SMAD4-207ENST00000589076 SPDYE6P0CI01 402 aa13.02□□□□□ -0.33
SMAD4-207ENST00000589076 SPDYE2Q495Y8 402 aa13.02□□□□□ -0.33
SMAD4-207ENST00000589076 PITPNM1O00562 1244 aa12.94□□□□□ -0.34
SMAD4-207ENST00000589076 PIP4P2Q8N4L2 257 aa12.91□□□□□ -0.34
SMAD4-207ENST00000589076 ZNF692Q9BU19 519 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-207ENST00000589076 FXR2P51116 673 aaKnown RBP eCLIP12.83□□□□□ -0.36
SMAD4-207ENST00000589076 MKRN4PQ13434 485 aaPredicted RBP12.83□□□□□ -0.36
SMAD4-207ENST00000589076 SPDYE1Q8NFV5 336 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-207ENST00000589076 CSRNP3Q8WYN3 585 aa12.79□□□□□ -0.36
SMAD4-207ENST00000589076 CLEC11AQ9Y240 323 aa12.79□□□□□ -0.36
SMAD4-207ENST00000589076 HAX1O00165 279 aa12.78□□□□□ -0.36
SMAD4-207ENST00000589076 SP7Q8TDD2 431 aaPredicted RBP12.77□□□□□ -0.37
SMAD4-207ENST00000589076 SSUH2Q9Y2M2 353 aa12.76□□□□□ -0.37
SMAD4-207ENST00000589076 EHMT2Q96KQ7 1210 aa12.7□□□□□ -0.38
SMAD4-207ENST00000589076 PRKAR2AP13861 404 aaKnown RBP12.65□□□□□ -0.38
SMAD4-207ENST00000589076 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
SMAD4-207ENST00000589076 PRR29P0C7W0 189 aa12.59□□□□□ -0.39
SMAD4-207ENST00000589076 CHADLQ6NUI6 762 aa12.45□□□□□ -0.42
SMAD4-207ENST00000589076 C19orf67A6NJJ6 358 aa12.42□□□□□ -0.42
SMAD4-207ENST00000589076 EVX2Q03828 476 aa12.41□□□□□ -0.42
SMAD4-207ENST00000589076 STAG3Q9UJ98 1225 aa12.4□□□□□ -0.42
SMAD4-207ENST00000589076 SPDYE4A6NLX3 237 aa12.36□□□□□ -0.43
SMAD4-207ENST00000589076 FARP1Q9Y4F1 1045 aaPredicted RBP12.31□□□□□ -0.44
SMAD4-207ENST00000589076 CD44P16070 742 aaKnown RBP12.27□□□□□ -0.45
SMAD4-207ENST00000589076 GABBR2O75899 941 aa12.25□□□□□ -0.45
SMAD4-207ENST00000589076 CLCN6P51797 869 aa12.22□□□□□ -0.45
SMAD4-207ENST00000589076 CREBZFQ9NS37 354 aa12.15□□□□□ -0.46
SMAD4-207ENST00000589076 PAK3O75914 559 aaPredicted RBP12.12□□□□□ -0.47
SMAD4-207ENST00000589076 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
SMAD4-207ENST00000589076 ZRANB1Q9UGI0 708 aa12.09□□□□□ -0.47
SMAD4-207ENST00000589076 ZNF579Q8NAF0 562 aaKnown RBP12.05□□□□□ -0.48
SMAD4-207ENST00000589076 DCBLD2Q96PD2 775 aa12.04□□□□□ -0.48
SMAD4-207ENST00000589076 LHX8Q68G74 356 aa11.99□□□□□ -0.49
SMAD4-207ENST00000589076 PLEKHG5O94827 1062 aa11.98□□□□□ -0.49
SMAD4-207ENST00000589076 PROM2Q8N271 834 aa11.94□□□□□ -0.5
SMAD4-207ENST00000589076 POTEIP0CG38 1075 aa11.89□□□□□ -0.51
SMAD4-207ENST00000589076 MNX1P50219 401 aaPredicted RBP11.89□□□□□ -0.51
SMAD4-207ENST00000589076 GALR2O43603 387 aaPredicted RBP11.85□□□□□ -0.51
SMAD4-207ENST00000589076 PHF12Q96QT6 1004 aa11.85□□□□□ -0.51
SMAD4-207ENST00000589076 MIER1Q8N108 512 aa11.84□□□□□ -0.51
SMAD4-207ENST00000589076 TSPYL2Q9H2G4 693 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-207ENST00000589076 PLCD3Q8N3E9 789 aa11.77□□□□□ -0.53
SMAD4-207ENST00000589076 ZBTB47Q9UFB7 747 aaPredicted RBP11.76□□□□□ -0.53
SMAD4-207ENST00000589076 FKBP8Q14318 412 aa11.7□□□□□ -0.54
SMAD4-207ENST00000589076 MS4A3Q96HJ5 214 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms