RNA–Protein interactions for RNA: ENST00000588136.5

TCF3-212, Transcript of transcription factor 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TCF3, Length 2,658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-212ENST00000588136 NISCHQ9Y2I1 1504 aa34.41■■■■□ 3.1
TCF3-212ENST00000588136 SHROOM4Q9ULL8 1493 aa29.89■■■□□ 2.37
TCF3-212ENST00000588136 SUPT5HO00267 1087 aaKnown RBP29.28■■■□□ 2.28
TCF3-212ENST00000588136 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
TCF3-212ENST00000588136 CCDC180Q9P1Z9 1646 aa29.03■■■□□ 2.24
TCF3-212ENST00000588136 DCAF8L2P0C7V8 631 aa29■■■□□ 2.23
TCF3-212ENST00000588136 MYO15BQ96JP2 1530 aa28.35■■■□□ 2.13
TCF3-212ENST00000588136 CHIC1Q5VXU3 224 aa28.3■■■□□ 2.12
TCF3-212ENST00000588136 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
TCF3-212ENST00000588136 LOC105371045A0A1W2PR82 267 aa27.69■■■□□ 2.02
TCF3-212ENST00000588136 PCGF6Q9BYE7 350 aa27.67■■■□□ 2.02
TCF3-212ENST00000588136 SCRIBQ14160 1630 aa27.61■■■□□ 2.01
TCF3-212ENST00000588136 HRCP23327 699 aa27.52■■■□□ 2
TCF3-212ENST00000588136 ABCC9O60706 1549 aa27.48■■□□□ 1.99
TCF3-212ENST00000588136 RSF1Q96T23 1441 aaPredicted RBP27.34■■□□□ 1.97
TCF3-212ENST00000588136 PPARGC1BQ86YN6 1023 aaKnown RBP27.28■■□□□ 1.96
TCF3-212ENST00000588136 RB1CC1Q8TDY2 1594 aa27.18■■□□□ 1.94
TCF3-212ENST00000588136 FAM9AQ8IZU1 332 aaPredicted RBP27.14■■□□□ 1.94
TCF3-212ENST00000588136 EHMT2Q96KQ7 1210 aa27.13■■□□□ 1.93
TCF3-212ENST00000588136 TRIM41Q8WV44 630 aa27.08■■□□□ 1.93
TCF3-212ENST00000588136 CECR2Q9BXF3 1484 aa27.05■■□□□ 1.92
TCF3-212ENST00000588136 MROH2BQ7Z745 1585 aa26.9■■□□□ 1.9
TCF3-212ENST00000588136 TRIM26Q12899 539 aaPredicted RBP26.87■■□□□ 1.89
TCF3-212ENST00000588136 NACADO15069 1562 aa26.86■■□□□ 1.89
TCF3-212ENST00000588136 WIZO95785 1651 aa26.8■■□□□ 1.88
TCF3-212ENST00000588136 BAZ1AQ9NRL2 1556 aaPredicted RBP26.43■■□□□ 1.82
TCF3-212ENST00000588136 ABCC8Q09428 1581 aa26.31■■□□□ 1.8
TCF3-212ENST00000588136 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
TCF3-212ENST00000588136 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
TCF3-212ENST00000588136 TTBK1Q5TCY1 1321 aaPredicted RBP26.23■■□□□ 1.79
TCF3-212ENST00000588136 PABPN1Q86U42 306 aaKnown RBP eCLIP26.23■■□□□ 1.791e-6■□□□□ 9.3
TCF3-212ENST00000588136 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
TCF3-212ENST00000588136 CCDC88BA6NC98 1476 aa26.2■■□□□ 1.78
TCF3-212ENST00000588136 TOP2AP11388 1531 aaKnown RBP26.17■■□□□ 1.78
TCF3-212ENST00000588136 ZEB1P37275 1124 aaPredicted RBP26.12■■□□□ 1.77
TCF3-212ENST00000588136 SMARCA2P51531 1590 aa26.11■■□□□ 1.77
TCF3-212ENST00000588136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.06■■□□□ 1.76
TCF3-212ENST00000588136 SOGA1O94964 1423 aa26.05■■□□□ 1.76
TCF3-212ENST00000588136 RUSC2Q8N2Y8 1516 aa25.97■■□□□ 1.75
TCF3-212ENST00000588136 BICRAQ9NZM4 1560 aa25.88■■□□□ 1.73
TCF3-212ENST00000588136 CCER1Q8TC90 406 aaPredicted RBP25.87■■□□□ 1.73
TCF3-212ENST00000588136 CEP162Q5TB80 1403 aa25.87■■□□□ 1.73
TCF3-212ENST00000588136 UBTFP17480 764 aaKnown RBP25.85■■□□□ 1.73
TCF3-212ENST00000588136 CSRNP3Q8WYN3 585 aa25.79■■□□□ 1.72
TCF3-212ENST00000588136 TNIKQ9UKE5 1360 aa25.69■■□□□ 1.7
TCF3-212ENST00000588136 WRNQ14191 1432 aaPredicted RBP eCLIP25.67■■□□□ 1.71e-6■■■■■ 58.5
TCF3-212ENST00000588136 RANGAP1P46060 587 aaPredicted RBP25.62■■□□□ 1.69
TCF3-212ENST00000588136 SYNJ1O43426 1573 aa25.62■■□□□ 1.69
TCF3-212ENST00000588136 SCAF1Q9H7N4 1312 aaKnown RBP25.59■■□□□ 1.69
TCF3-212ENST00000588136 GOLGA3Q08378 1498 aa25.56■■□□□ 1.68
TCF3-212ENST00000588136 EEA1Q15075 1411 aa25.55■■□□□ 1.68
TCF3-212ENST00000588136 ATAD2BQ9ULI0 1458 aa25.54■■□□□ 1.68
TCF3-212ENST00000588136 PEG3Q9GZU2 1588 aa25.53■■□□□ 1.68
TCF3-212ENST00000588136 BAZ1BQ9UIG0 1483 aaKnown RBP25.5■■□□□ 1.67
TCF3-212ENST00000588136 PELP1Q8IZL8 1130 aaKnown RBP25.47■■□□□ 1.67
TCF3-212ENST00000588136 HNRNPUL2Q1KMD3 747 aaKnown RBP25.42■■□□□ 1.66
TCF3-212ENST00000588136 CEP164Q9UPV0 1460 aa25.37■■□□□ 1.65
TCF3-212ENST00000588136 RAPGEF2Q9Y4G8 1499 aa25.36■■□□□ 1.65
TCF3-212ENST00000588136 DIEXFQ68CQ4 756 aaKnown RBP25.36■■□□□ 1.65
TCF3-212ENST00000588136 CLIP1P30622 1438 aa25.35■■□□□ 1.65
TCF3-212ENST00000588136 KIF21BO75037 1637 aa25.3■■□□□ 1.64
TCF3-212ENST00000588136 NEUROD1Q13562 356 aa25.25■■□□□ 1.63
TCF3-212ENST00000588136 VPS8Q8N3P4 1428 aa25.18■■□□□ 1.62
TCF3-212ENST00000588136 APLP2Q06481 763 aa25.16■■□□□ 1.62
TCF3-212ENST00000588136 TOP2BQ02880 1626 aa25.15■■□□□ 1.62
TCF3-212ENST00000588136 ACIN1Q9UKV3 1341 aaKnown RBP25.14■■□□□ 1.62
TCF3-212ENST00000588136 ZNF316A6NFI3 1004 aaPredicted RBP25.08■■□□□ 1.6
TCF3-212ENST00000588136 BIVM-ERCC5R4GMW8 1640 aa25.02■■□□□ 1.6
TCF3-212ENST00000588136 YTHDC1Q96MU7 727 aaKnown RBP25.01■■□□□ 1.59
TCF3-212ENST00000588136 CUX1P39880 1505 aa25■■□□□ 1.59
TCF3-212ENST00000588136 KANK4Q5T7N3 995 aaPredicted RBP24.99■■□□□ 1.59
TCF3-212ENST00000588136 GTF3C3Q9Y5Q9 886 aa24.98■■□□□ 1.59
TCF3-212ENST00000588136 ARAP1Q96P48 1450 aa24.94■■□□□ 1.58
TCF3-212ENST00000588136 PRXQ9BXM0 1461 aa24.93■■□□□ 1.58
TCF3-212ENST00000588136 NCAPD3P42695 1498 aa24.91■■□□□ 1.58
TCF3-212ENST00000588136 CENPBP07199 599 aaPredicted RBP24.89■■□□□ 1.58
TCF3-212ENST00000588136 MIER1Q8N108 512 aa24.89■■□□□ 1.57
TCF3-212ENST00000588136 HMGXB3Q12766 1538 aa24.87■■□□□ 1.57
TCF3-212ENST00000588136 ERICH3Q5RHP9 1530 aa24.84■■□□□ 1.57
TCF3-212ENST00000588136 KIF27Q86VH2 1401 aa24.82■■□□□ 1.56
TCF3-212ENST00000588136 ITGAEP38570 1179 aa24.8■■□□□ 1.56
TCF3-212ENST00000588136 CFTRP13569 1480 aa24.79■■□□□ 1.56
TCF3-212ENST00000588136 DHX57Q6P158 1386 aaKnown RBP24.72■■□□□ 1.55
TCF3-212ENST00000588136 ARHGAP35Q9NRY4 1499 aa24.71■■□□□ 1.55
TCF3-212ENST00000588136 CUX2O14529 1486 aa24.69■■□□□ 1.54
TCF3-212ENST00000588136 P3H3Q8IVL6 736 aa24.61■■□□□ 1.53
TCF3-212ENST00000588136 IGF1RP08069 1367 aa24.61■■□□□ 1.53
TCF3-212ENST00000588136 RRBP1Q9P2E9 1410 aaKnown RBP24.56■■□□□ 1.52
TCF3-212ENST00000588136 FGD5Q6ZNL6 1462 aa24.56■■□□□ 1.52
TCF3-212ENST00000588136 CCNB3Q8WWL7 1395 aa24.55■■□□□ 1.52
TCF3-212ENST00000588136 CADPSQ9ULU8 1353 aa24.54■■□□□ 1.52
TCF3-212ENST00000588136 ATP1B4Q9UN42 357 aaPredicted RBP24.54■■□□□ 1.52
TCF3-212ENST00000588136 CARMIL1Q5VZK9 1371 aa24.51■■□□□ 1.51
TCF3-212ENST00000588136 PRDM2Q13029 1718 aa24.5■■□□□ 1.51
TCF3-212ENST00000588136 CC2D2AQ9P2K1 1620 aa24.48■■□□□ 1.51
TCF3-212ENST00000588136 RAD54L2Q9Y4B4 1467 aa24.42■■□□□ 1.5
TCF3-212ENST00000588136 CLSPNQ9HAW4 1339 aa24.41■■□□□ 1.5
TCF3-212ENST00000588136 RAB3GAP2Q9H2M9 1393 aa24.41■■□□□ 1.5
TCF3-212ENST00000588136 FAM50AQ14320 339 aaKnown RBP24.4■■□□□ 1.5
TCF3-212ENST00000588136 TIAM1Q13009 1591 aa24.39■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms