RNA–Protein interactions for RNA: ENST00000585448.1

SMAD4-203, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-203ENST00000585448 AEBP2Q6ZN18 517 aaPredicted RBP24.11■■□□□ 1.45
SMAD4-203ENST00000585448 CHIC1Q5VXU3 224 aa23.66■■□□□ 1.38
SMAD4-203ENST00000585448 PHF23Q9BUL5 403 aaPredicted RBP20.76■□□□□ 0.91
SMAD4-203ENST00000585448 SENP3Q9H4L4 574 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-203ENST00000585448 PLPPR3Q6T4P5 718 aa19.25■□□□□ 0.67
SMAD4-203ENST00000585448 FOXD1Q16676 465 aa18.99■□□□□ 0.63
SMAD4-203ENST00000585448 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
SMAD4-203ENST00000585448 ADRA2BP18089 450 aa18.21■□□□□ 0.51
SMAD4-203ENST00000585448 PIAS4Q8N2W9 510 aaPredicted RBP17.89■□□□□ 0.45
SMAD4-203ENST00000585448 MSH5O43196 834 aa17.57■□□□□ 0.4
SMAD4-203ENST00000585448 PPP4R3CPQ6ZMV5 832 aa16.91■□□□□ 0.3
SMAD4-203ENST00000585448 SCAF1Q9H7N4 1312 aaKnown RBP16.8■□□□□ 0.28
SMAD4-203ENST00000585448 KCNA4P22459 653 aa16.52■□□□□ 0.24
SMAD4-203ENST00000585448 NCBP3Q53F19 620 aaKnown RBP16.52■□□□□ 0.24
SMAD4-203ENST00000585448 MAPK8IP2Q13387 824 aaPredicted RBP16.49■□□□□ 0.23
SMAD4-203ENST00000585448 CNKSR2Q8WXI2 1034 aa16.49■□□□□ 0.23
SMAD4-203ENST00000585448 DMRT2Q9Y5R5 561 aa16.4■□□□□ 0.22
SMAD4-203ENST00000585448 NPM3O75607 178 aaKnown RBP16.24■□□□□ 0.19
SMAD4-203ENST00000585448 RNF216Q9NWF9 866 aaPredicted RBP16.17■□□□□ 0.18
SMAD4-203ENST00000585448 HOXD11P31277 338 aaPredicted RBP16.12■□□□□ 0.17
SMAD4-203ENST00000585448 DNAJC5BQ9UF47 199 aa16.03■□□□□ 0.16
SMAD4-203ENST00000585448 POTEDQ86YR6 584 aa15.95■□□□□ 0.14
SMAD4-203ENST00000585448 SLC4A1APQ9BWU0 796 aaKnown RBP15.75■□□□□ 0.11
SMAD4-203ENST00000585448 DCAF8L1A6NGE4 600 aa15.48■□□□□ 0.07
SMAD4-203ENST00000585448 SLC4A2P04920 1241 aa15.33■□□□□ 0.04
SMAD4-203ENST00000585448 FOXD4L1Q9NU39 408 aa15.27■□□□□ 0.04
SMAD4-203ENST00000585448 EHMT2Q96KQ7 1210 aa15.23■□□□□ 0.03
SMAD4-203ENST00000585448 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.22■□□□□ 0.03
SMAD4-203ENST00000585448 ZBTB22O15209 634 aa15.21■□□□□ 0.03
SMAD4-203ENST00000585448 CSRNP3Q8WYN3 585 aa15.18■□□□□ 0.02
SMAD4-203ENST00000585448 MYCNP04198 464 aaPredicted RBP15.06■□□□□ 0
SMAD4-203ENST00000585448 RNF39Q9H2S5 420 aa15.04■□□□□ -0
SMAD4-203ENST00000585448 U3KPZ7 1027 aaPredicted RBP15.04■□□□□ -0
SMAD4-203ENST00000585448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.94□□□□□ -0.02
SMAD4-203ENST00000585448 HNRNPUL2Q1KMD3 747 aaKnown RBP14.94□□□□□ -0.02
SMAD4-203ENST00000585448 C1QBPQ07021 282 aaKnown RBP14.9□□□□□ -0.02
SMAD4-203ENST00000585448 SAMD1Q6SPF0 538 aaPredicted RBP14.86□□□□□ -0.03
SMAD4-203ENST00000585448 ATXN8OSP0DMR3 200 aa14.82□□□□□ -0.04
SMAD4-203ENST00000585448 APLP2Q06481 763 aa14.78□□□□□ -0.04
SMAD4-203ENST00000585448 ATF5Q9Y2D1 282 aaPredicted RBP14.54□□□□□ -0.08
SMAD4-203ENST00000585448 CACNB1Q02641 598 aaPredicted RBP14.53□□□□□ -0.08
SMAD4-203ENST00000585448 SPINK5Q9NQ38 1064 aaPredicted RBP14.53□□□□□ -0.08
SMAD4-203ENST00000585448 ZNF219Q9P2Y4 722 aaPredicted RBP14.53□□□□□ -0.08
SMAD4-203ENST00000585448 CAPN15O75808 1086 aa14.46□□□□□ -0.09
SMAD4-203ENST00000585448 TRHP20396 242 aaPredicted RBP14.38□□□□□ -0.11
SMAD4-203ENST00000585448 DSG3P32926 999 aa14.3□□□□□ -0.12
SMAD4-203ENST00000585448 POLA2Q14181 598 aa14.21□□□□□ -0.13
SMAD4-203ENST00000585448 ABCB7O75027 752 aa14.16□□□□□ -0.14
SMAD4-203ENST00000585448 ZBTB12Q9Y330 459 aaPredicted RBP14.11□□□□□ -0.15
SMAD4-203ENST00000585448 FBLN2P98095 1184 aa13.99□□□□□ -0.17
SMAD4-203ENST00000585448 MKRN4PQ13434 485 aaPredicted RBP13.96□□□□□ -0.17
SMAD4-203ENST00000585448 SPDYE2BA6NHP3 402 aa13.72□□□□□ -0.21
SMAD4-203ENST00000585448 SPDYE6P0CI01 402 aa13.72□□□□□ -0.21
SMAD4-203ENST00000585448 SPDYE2Q495Y8 402 aa13.72□□□□□ -0.21
SMAD4-203ENST00000585448 OSCARQ8IYS5 282 aa13.72□□□□□ -0.21
SMAD4-203ENST00000585448 RBM42Q9BTD8 480 aaKnown RBP13.68□□□□□ -0.22
SMAD4-203ENST00000585448 FKBP8Q14318 412 aa13.66□□□□□ -0.22
SMAD4-203ENST00000585448 SPDYE4A6NLX3 237 aa13.65□□□□□ -0.22
SMAD4-203ENST00000585448 SSUH2Q9Y2M2 353 aa13.61□□□□□ -0.23
SMAD4-203ENST00000585448 PROM2Q8N271 834 aa13.58□□□□□ -0.24
SMAD4-203ENST00000585448 ZNF692Q9BU19 519 aaPredicted RBP13.57□□□□□ -0.24
SMAD4-203ENST00000585448 AKT1S1Q96B36 256 aa13.51□□□□□ -0.25
SMAD4-203ENST00000585448 PABPN1Q86U42 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMAD4-203ENST00000585448 REM2Q8IYK8 340 aaPredicted RBP13.31□□□□□ -0.28
SMAD4-203ENST00000585448 FBXO3Q9UK99 471 aa13.29□□□□□ -0.28
SMAD4-203ENST00000585448 STAG3Q9UJ98 1225 aa13.28□□□□□ -0.28
SMAD4-203ENST00000585448 SPDYE1Q8NFV5 336 aaPredicted RBP13.26□□□□□ -0.29
SMAD4-203ENST00000585448 PITPNM1O00562 1244 aa13.16□□□□□ -0.3
SMAD4-203ENST00000585448 CLEC11AQ9Y240 323 aa13.07□□□□□ -0.32
SMAD4-203ENST00000585448 VASPP50552 380 aaPredicted RBP13.05□□□□□ -0.32
SMAD4-203ENST00000585448 PRR29P0C7W0 189 aa13.03□□□□□ -0.32
SMAD4-203ENST00000585448 CHRDL2Q6WN34 429 aa13.02□□□□□ -0.33
SMAD4-203ENST00000585448 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
SMAD4-203ENST00000585448 CREBZFQ9NS37 354 aa12.91□□□□□ -0.34
SMAD4-203ENST00000585448 PLEKHG5O94827 1062 aa12.9□□□□□ -0.34
SMAD4-203ENST00000585448 MIER1Q8N108 512 aa12.9□□□□□ -0.34
SMAD4-203ENST00000585448 PLCD3Q8N3E9 789 aa12.89□□□□□ -0.35
SMAD4-203ENST00000585448 ZBTB47Q9UFB7 747 aaPredicted RBP12.88□□□□□ -0.35
SMAD4-203ENST00000585448 PIP4P2Q8N4L2 257 aa12.86□□□□□ -0.35
SMAD4-203ENST00000585448 IFNLR1Q8IU57 520 aaPredicted RBP12.85□□□□□ -0.35
SMAD4-203ENST00000585448 MNX1P50219 401 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-203ENST00000585448 PRKAR2AP13861 404 aaKnown RBP12.8□□□□□ -0.36
SMAD4-203ENST00000585448 CHADLQ6NUI6 762 aa12.75□□□□□ -0.37
SMAD4-203ENST00000585448 FARP1Q9Y4F1 1045 aaPredicted RBP12.73□□□□□ -0.37
SMAD4-203ENST00000585448 NPM1P06748 294 aaKnown RBP eCLIP12.72□□□□□ -0.37
SMAD4-203ENST00000585448 KLHL34Q8N239 644 aa12.72□□□□□ -0.37
SMAD4-203ENST00000585448 SPOCK2Q92563 424 aa12.71□□□□□ -0.37
SMAD4-203ENST00000585448 NUBP1P53384 320 aa12.64□□□□□ -0.39
SMAD4-203ENST00000585448 POTEHQ6S545 545 aa12.64□□□□□ -0.39
SMAD4-203ENST00000585448 AMER1Q5JTC6 1135 aaPredicted RBP12.62□□□□□ -0.39
SMAD4-203ENST00000585448 GSE1Q14687 1217 aa12.54□□□□□ -0.4
SMAD4-203ENST00000585448 RASEFQ8IZ41 740 aa12.53□□□□□ -0.4
SMAD4-203ENST00000585448 FAM212AQ96EL1 285 aa12.53□□□□□ -0.4
SMAD4-203ENST00000585448 C19orf67A6NJJ6 358 aa12.51□□□□□ -0.41
SMAD4-203ENST00000585448 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
SMAD4-203ENST00000585448 RTN4Q9NQC3 1192 aaKnown RBP12.47□□□□□ -0.41
SMAD4-203ENST00000585448 PAK3O75914 559 aaPredicted RBP12.46□□□□□ -0.41
SMAD4-203ENST00000585448 PKD2Q13563 968 aa12.45□□□□□ -0.42
SMAD4-203ENST00000585448 CD44P16070 742 aaKnown RBP12.44□□□□□ -0.42
SMAD4-203ENST00000585448 DCAF8Q5TAQ9 597 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms