RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 AEBP2Q6ZN18 517 aaPredicted RBP28.5■■■□□ 2.15
SMCHD1-206ENST00000581631 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
SMCHD1-206ENST00000581631 SENP3Q9H4L4 574 aaPredicted RBP24.21■■□□□ 1.47
SMCHD1-206ENST00000581631 PHF23Q9BUL5 403 aaPredicted RBP23.9■■□□□ 1.42
SMCHD1-206ENST00000581631 FOXD1Q16676 465 aa22.62■■□□□ 1.21
SMCHD1-206ENST00000581631 PLPPR3Q6T4P5 718 aa21.52■■□□□ 1.04
SMCHD1-206ENST00000581631 PPP6R1Q9UPN7 881 aa21.16■□□□□ 0.98
SMCHD1-206ENST00000581631 MSH5O43196 834 aa21.11■□□□□ 0.97
SMCHD1-206ENST00000581631 PIAS4Q8N2W9 510 aaPredicted RBP21.06■□□□□ 0.96
SMCHD1-206ENST00000581631 ADRA2BP18089 450 aa21.04■□□□□ 0.96
SMCHD1-206ENST00000581631 POTEDQ86YR6 584 aa20.67■□□□□ 0.9
SMCHD1-206ENST00000581631 MAPK8IP2Q13387 824 aaPredicted RBP19.34■□□□□ 0.69
SMCHD1-206ENST00000581631 DMRT2Q9Y5R5 561 aa19.24■□□□□ 0.67
SMCHD1-206ENST00000581631 SCAF1Q9H7N4 1312 aaKnown RBP19.16■□□□□ 0.66
SMCHD1-206ENST00000581631 PPP4R3CPQ6ZMV5 832 aa18.87■□□□□ 0.61
SMCHD1-206ENST00000581631 HOXD11P31277 338 aaPredicted RBP18.56■□□□□ 0.56
SMCHD1-206ENST00000581631 CNKSR2Q8WXI2 1034 aa18.52■□□□□ 0.56
SMCHD1-206ENST00000581631 RNF216Q9NWF9 866 aaPredicted RBP18.37■□□□□ 0.53
SMCHD1-206ENST00000581631 DCAF8L1A6NGE4 600 aa18.27■□□□□ 0.52
SMCHD1-206ENST00000581631 RNF39Q9H2S5 420 aa18.07■□□□□ 0.48
SMCHD1-206ENST00000581631 CACNB1Q02641 598 aaPredicted RBP18.06■□□□□ 0.48
SMCHD1-206ENST00000581631 NCBP3Q53F19 620 aaKnown RBP18.06■□□□□ 0.48
SMCHD1-206ENST00000581631 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
SMCHD1-206ENST00000581631 NPM3O75607 178 aaKnown RBP17.91■□□□□ 0.46
SMCHD1-206ENST00000581631 C1QBPQ07021 282 aaKnown RBP17.76■□□□□ 0.43
SMCHD1-206ENST00000581631 KCNA4P22459 653 aa17.55■□□□□ 0.4
SMCHD1-206ENST00000581631 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.53■□□□□ 0.4
SMCHD1-206ENST00000581631 U3KPZ7 1027 aaPredicted RBP17.3■□□□□ 0.36
SMCHD1-206ENST00000581631 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
SMCHD1-206ENST00000581631 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.32
SMCHD1-206ENST00000581631 DSG3P32926 999 aa16.91■□□□□ 0.3
SMCHD1-206ENST00000581631 CAPN15O75808 1086 aa16.89■□□□□ 0.29
SMCHD1-206ENST00000581631 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.68■□□□□ 0.26
SMCHD1-206ENST00000581631 HNRNPUL2Q1KMD3 747 aaKnown RBP16.68■□□□□ 0.26
SMCHD1-206ENST00000581631 APLP2Q06481 763 aa16.67■□□□□ 0.26
SMCHD1-206ENST00000581631 ZNF219Q9P2Y4 722 aaPredicted RBP16.63■□□□□ 0.25
SMCHD1-206ENST00000581631 TRHP20396 242 aaPredicted RBP16.62■□□□□ 0.25
SMCHD1-206ENST00000581631 SAMD1Q6SPF0 538 aaPredicted RBP16.61■□□□□ 0.25
SMCHD1-206ENST00000581631 ABCB7O75027 752 aa16.53■□□□□ 0.24
SMCHD1-206ENST00000581631 MYCNP04198 464 aaPredicted RBP16.53■□□□□ 0.24
SMCHD1-206ENST00000581631 SLC4A1APQ9BWU0 796 aaKnown RBP16.51■□□□□ 0.23
SMCHD1-206ENST00000581631 FOXD4L1Q9NU39 408 aa16.36■□□□□ 0.21
SMCHD1-206ENST00000581631 POLA2Q14181 598 aa16.21■□□□□ 0.19
SMCHD1-206ENST00000581631 ATF5Q9Y2D1 282 aaPredicted RBP16.21■□□□□ 0.19
SMCHD1-206ENST00000581631 ZBTB22O15209 634 aa16.2■□□□□ 0.18
SMCHD1-206ENST00000581631 POTEHQ6S545 545 aa16.16■□□□□ 0.18
SMCHD1-206ENST00000581631 RBM42Q9BTD8 480 aaKnown RBP16.06■□□□□ 0.16
SMCHD1-206ENST00000581631 ATXN8OSP0DMR3 200 aa15.87■□□□□ 0.13
SMCHD1-206ENST00000581631 ZBTB12Q9Y330 459 aaPredicted RBP15.86■□□□□ 0.13
SMCHD1-206ENST00000581631 CHRDL2Q6WN34 429 aa15.73■□□□□ 0.11
SMCHD1-206ENST00000581631 OSCARQ8IYS5 282 aa15.72■□□□□ 0.11
SMCHD1-206ENST00000581631 AKT1S1Q96B36 256 aa15.72■□□□□ 0.11
SMCHD1-206ENST00000581631 REM2Q8IYK8 340 aaPredicted RBP15.58■□□□□ 0.08
SMCHD1-206ENST00000581631 MKRN4PQ13434 485 aaPredicted RBP15.48■□□□□ 0.07
SMCHD1-206ENST00000581631 FBLN2P98095 1184 aa15.44■□□□□ 0.06
SMCHD1-206ENST00000581631 PITPNM1O00562 1244 aa15.43■□□□□ 0.06
SMCHD1-206ENST00000581631 SPDYE2BA6NHP3 402 aa15.41■□□□□ 0.06
SMCHD1-206ENST00000581631 SPDYE6P0CI01 402 aa15.41■□□□□ 0.06
SMCHD1-206ENST00000581631 SPDYE2Q495Y8 402 aa15.41■□□□□ 0.06
SMCHD1-206ENST00000581631 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
SMCHD1-206ENST00000581631 PIP4P2Q8N4L2 257 aa15.39■□□□□ 0.05
SMCHD1-206ENST00000581631 FXR2P51116 673 aaKnown RBP eCLIP15.33■□□□□ 0.04
SMCHD1-206ENST00000581631 SSUH2Q9Y2M2 353 aa15.27■□□□□ 0.04
SMCHD1-206ENST00000581631 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
SMCHD1-206ENST00000581631 SP7Q8TDD2 431 aaPredicted RBP15.15■□□□□ 0.02
SMCHD1-206ENST00000581631 SPDYE1Q8NFV5 336 aaPredicted RBP15.11■□□□□ 0.01
SMCHD1-206ENST00000581631 EHMT2Q96KQ7 1210 aa15.08■□□□□ 0
SMCHD1-206ENST00000581631 CLEC11AQ9Y240 323 aa15.03■□□□□ -0
SMCHD1-206ENST00000581631 HAX1O00165 279 aa15.01□□□□□ -0.01
SMCHD1-206ENST00000581631 PRKAR2AP13861 404 aaKnown RBP14.98□□□□□ -0.01
SMCHD1-206ENST00000581631 PABPN1Q86U42 306 aaKnown RBP eCLIP14.98□□□□□ -0.01
SMCHD1-206ENST00000581631 EVX2Q03828 476 aa14.96□□□□□ -0.01
SMCHD1-206ENST00000581631 C19orf67A6NJJ6 358 aa14.84□□□□□ -0.03
SMCHD1-206ENST00000581631 CHADLQ6NUI6 762 aa14.82□□□□□ -0.04
SMCHD1-206ENST00000581631 PRR29P0C7W0 189 aa14.81□□□□□ -0.04
SMCHD1-206ENST00000581631 SPDYE4A6NLX3 237 aa14.64□□□□□ -0.07
SMCHD1-206ENST00000581631 FARP1Q9Y4F1 1045 aaPredicted RBP14.61□□□□□ -0.07
SMCHD1-206ENST00000581631 GABBR2O75899 941 aa14.58□□□□□ -0.08
SMCHD1-206ENST00000581631 CREBZFQ9NS37 354 aa14.55□□□□□ -0.08
SMCHD1-206ENST00000581631 STAG3Q9UJ98 1225 aa14.53□□□□□ -0.08
SMCHD1-206ENST00000581631 CD44P16070 742 aaKnown RBP14.5□□□□□ -0.09
SMCHD1-206ENST00000581631 PROM2Q8N271 834 aa14.43□□□□□ -0.1
SMCHD1-206ENST00000581631 POTEIP0CG38 1075 aa14.34□□□□□ -0.11
SMCHD1-206ENST00000581631 MNX1P50219 401 aaPredicted RBP14.34□□□□□ -0.11
SMCHD1-206ENST00000581631 ZNF579Q8NAF0 562 aaKnown RBP14.34□□□□□ -0.11
SMCHD1-206ENST00000581631 CLCN6P51797 869 aa14.32□□□□□ -0.12
SMCHD1-206ENST00000581631 ZRANB1Q9UGI0 708 aa14.28□□□□□ -0.12
SMCHD1-206ENST00000581631 LHX8Q68G74 356 aa14.18□□□□□ -0.14
SMCHD1-206ENST00000581631 NPM1P06748 294 aaKnown RBP eCLIP14.17□□□□□ -0.14
SMCHD1-206ENST00000581631 GALR2O43603 387 aaPredicted RBP14.15□□□□□ -0.14
SMCHD1-206ENST00000581631 PHF12Q96QT6 1004 aa14.13□□□□□ -0.15
SMCHD1-206ENST00000581631 PAK3O75914 559 aaPredicted RBP14.09□□□□□ -0.15
SMCHD1-206ENST00000581631 DCBLD2Q96PD2 775 aa14.09□□□□□ -0.15
SMCHD1-206ENST00000581631 MS4A3Q96HJ5 214 aa13.96□□□□□ -0.17
SMCHD1-206ENST00000581631 CCDC61Q9Y6R9 512 aa13.96□□□□□ -0.17
SMCHD1-206ENST00000581631 PELP1Q8IZL8 1130 aaKnown RBP13.91□□□□□ -0.18
SMCHD1-206ENST00000581631 TSPYL2Q9H2G4 693 aaPredicted RBP13.91□□□□□ -0.18
SMCHD1-206ENST00000581631 MIER1Q8N108 512 aa13.9□□□□□ -0.18
SMCHD1-206ENST00000581631 FKBP8Q14318 412 aa13.89□□□□□ -0.19
SMCHD1-206ENST00000581631 ASTLQ6HA08 431 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms