RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 AEBP2Q6ZN18 517 aaPredicted RBP28.21■■■□□ 2.11
SMCHD1-205ENST00000581383 CHIC1Q5VXU3 224 aa26.39■■□□□ 1.82
SMCHD1-205ENST00000581383 SENP3Q9H4L4 574 aaPredicted RBP24.23■■□□□ 1.47
SMCHD1-205ENST00000581383 PHF23Q9BUL5 403 aaPredicted RBP23.79■■□□□ 1.4
SMCHD1-205ENST00000581383 FOXD1Q16676 465 aa22.67■■□□□ 1.22
SMCHD1-205ENST00000581383 POTEDQ86YR6 584 aa22.49■■□□□ 1.19
SMCHD1-205ENST00000581383 MSH5O43196 834 aa21.57■■□□□ 1.04
SMCHD1-205ENST00000581383 PLPPR3Q6T4P5 718 aa21.03■□□□□ 0.96
SMCHD1-205ENST00000581383 PIAS4Q8N2W9 510 aaPredicted RBP20.98■□□□□ 0.95
SMCHD1-205ENST00000581383 PPP6R1Q9UPN7 881 aa20.53■□□□□ 0.88
SMCHD1-205ENST00000581383 ADRA2BP18089 450 aa20.41■□□□□ 0.86
SMCHD1-205ENST00000581383 DMRT2Q9Y5R5 561 aa19.07■□□□□ 0.64
SMCHD1-205ENST00000581383 CACNB1Q02641 598 aaPredicted RBP19.04■□□□□ 0.64
SMCHD1-205ENST00000581383 MAPK8IP2Q13387 824 aaPredicted RBP19.01■□□□□ 0.63
SMCHD1-205ENST00000581383 SCAF1Q9H7N4 1312 aaKnown RBP18.75■□□□□ 0.59
SMCHD1-205ENST00000581383 PPP4R3CPQ6ZMV5 832 aa18.45■□□□□ 0.54
SMCHD1-205ENST00000581383 DCAF8L1A6NGE4 600 aa18.34■□□□□ 0.53
SMCHD1-205ENST00000581383 RNF39Q9H2S5 420 aa18.31■□□□□ 0.52
SMCHD1-205ENST00000581383 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
SMCHD1-205ENST00000581383 HOXD11P31277 338 aaPredicted RBP18.04■□□□□ 0.48
SMCHD1-205ENST00000581383 C1QBPQ07021 282 aaKnown RBP18.01■□□□□ 0.47
SMCHD1-205ENST00000581383 NCBP3Q53F19 620 aaKnown RBP17.95■□□□□ 0.46
SMCHD1-205ENST00000581383 RNF216Q9NWF9 866 aaPredicted RBP17.78■□□□□ 0.44
SMCHD1-205ENST00000581383 DNAJC5BQ9UF47 199 aa17.6■□□□□ 0.41
SMCHD1-205ENST00000581383 NPM3O75607 178 aaKnown RBP17.52■□□□□ 0.4
SMCHD1-205ENST00000581383 POTEHQ6S545 545 aa17.47■□□□□ 0.39
SMCHD1-205ENST00000581383 KCNA4P22459 653 aa17.43■□□□□ 0.38
SMCHD1-205ENST00000581383 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.19■□□□□ 0.34
SMCHD1-205ENST00000581383 DSG3P32926 999 aa16.86■□□□□ 0.29
SMCHD1-205ENST00000581383 CAPN15O75808 1086 aa16.76■□□□□ 0.27
SMCHD1-205ENST00000581383 SPINK5Q9NQ38 1064 aaPredicted RBP16.73■□□□□ 0.27
SMCHD1-205ENST00000581383 U3KPZ7 1027 aaPredicted RBP16.71■□□□□ 0.27
SMCHD1-205ENST00000581383 SLC4A1APQ9BWU0 796 aaKnown RBP16.61■□□□□ 0.25
SMCHD1-205ENST00000581383 SLC4A2P04920 1241 aa16.58■□□□□ 0.24
SMCHD1-205ENST00000581383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
SMCHD1-205ENST00000581383 APLP2Q06481 763 aa16.44■□□□□ 0.22
SMCHD1-205ENST00000581383 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
SMCHD1-205ENST00000581383 SAMD1Q6SPF0 538 aaPredicted RBP16.32■□□□□ 0.2
SMCHD1-205ENST00000581383 TRHP20396 242 aaPredicted RBP16.29■□□□□ 0.2
SMCHD1-205ENST00000581383 ABCB7O75027 752 aa16.28■□□□□ 0.2
SMCHD1-205ENST00000581383 MYCNP04198 464 aaPredicted RBP16.27■□□□□ 0.2
SMCHD1-205ENST00000581383 FOXD4L1Q9NU39 408 aa16.23■□□□□ 0.19
SMCHD1-205ENST00000581383 ZNF219Q9P2Y4 722 aaPredicted RBP16.23■□□□□ 0.19
SMCHD1-205ENST00000581383 RBM42Q9BTD8 480 aaKnown RBP16.13■□□□□ 0.17
SMCHD1-205ENST00000581383 CHRDL2Q6WN34 429 aa16.1■□□□□ 0.17
SMCHD1-205ENST00000581383 SP7Q8TDD2 431 aaPredicted RBP15.97■□□□□ 0.15
SMCHD1-205ENST00000581383 ZBTB22O15209 634 aa15.92■□□□□ 0.14
SMCHD1-205ENST00000581383 POLA2Q14181 598 aa15.83■□□□□ 0.12
SMCHD1-205ENST00000581383 ATF5Q9Y2D1 282 aaPredicted RBP15.76■□□□□ 0.11
SMCHD1-205ENST00000581383 ATXN8OSP0DMR3 200 aa15.67■□□□□ 0.1
SMCHD1-205ENST00000581383 EHMT2Q96KQ7 1210 aa15.65■□□□□ 0.1
SMCHD1-205ENST00000581383 ZBTB12Q9Y330 459 aaPredicted RBP15.58■□□□□ 0.08
SMCHD1-205ENST00000581383 AKT1S1Q96B36 256 aa15.57■□□□□ 0.08
SMCHD1-205ENST00000581383 PIP4P2Q8N4L2 257 aa15.53■□□□□ 0.08
SMCHD1-205ENST00000581383 HAX1O00165 279 aa15.5■□□□□ 0.07
SMCHD1-205ENST00000581383 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
SMCHD1-205ENST00000581383 REM2Q8IYK8 340 aaPredicted RBP15.41■□□□□ 0.06
SMCHD1-205ENST00000581383 FBLN2P98095 1184 aa15.36■□□□□ 0.05
SMCHD1-205ENST00000581383 FXR2P51116 673 aaKnown RBP eCLIP15.31■□□□□ 0.04
SMCHD1-205ENST00000581383 OSCARQ8IYS5 282 aa15.29■□□□□ 0.04
SMCHD1-205ENST00000581383 PITPNM1O00562 1244 aa15.25■□□□□ 0.03
SMCHD1-205ENST00000581383 EVX2Q03828 476 aa15.21■□□□□ 0.03
SMCHD1-205ENST00000581383 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
SMCHD1-205ENST00000581383 SPDYE6P0CI01 402 aa15.05■□□□□ -0
SMCHD1-205ENST00000581383 SPDYE2Q495Y8 402 aa15.05■□□□□ -0
SMCHD1-205ENST00000581383 MKRN4PQ13434 485 aaPredicted RBP15.02■□□□□ -0
SMCHD1-205ENST00000581383 ZNF692Q9BU19 519 aaPredicted RBP15□□□□□ -0.01
SMCHD1-205ENST00000581383 LHX8Q68G74 356 aa14.98□□□□□ -0.01
SMCHD1-205ENST00000581383 PRKAR2AP13861 404 aaKnown RBP14.86□□□□□ -0.03
SMCHD1-205ENST00000581383 C19orf67A6NJJ6 358 aa14.84□□□□□ -0.03
SMCHD1-205ENST00000581383 GABBR2O75899 941 aa14.84□□□□□ -0.03
SMCHD1-205ENST00000581383 CLEC11AQ9Y240 323 aa14.84□□□□□ -0.03
SMCHD1-205ENST00000581383 SPDYE1Q8NFV5 336 aaPredicted RBP14.78□□□□□ -0.04
SMCHD1-205ENST00000581383 SSUH2Q9Y2M2 353 aa14.77□□□□□ -0.05
SMCHD1-205ENST00000581383 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
SMCHD1-205ENST00000581383 PLSCR2Q9NRY7 297 aa14.74□□□□□ -0.05
SMCHD1-205ENST00000581383 SPDYE4A6NLX3 237 aa14.63□□□□□ -0.07
SMCHD1-205ENST00000581383 PRR29P0C7W0 189 aa14.59□□□□□ -0.07
SMCHD1-205ENST00000581383 POTEIP0CG38 1075 aa14.5□□□□□ -0.09
SMCHD1-205ENST00000581383 CHADLQ6NUI6 762 aa14.5□□□□□ -0.09
SMCHD1-205ENST00000581383 STAG3Q9UJ98 1225 aa14.44□□□□□ -0.1
SMCHD1-205ENST00000581383 CLCN6P51797 869 aa14.35□□□□□ -0.11
SMCHD1-205ENST00000581383 CD44P16070 742 aaKnown RBP14.34□□□□□ -0.11
SMCHD1-205ENST00000581383 DCBLD2Q96PD2 775 aa14.28□□□□□ -0.12
SMCHD1-205ENST00000581383 FARP1Q9Y4F1 1045 aaPredicted RBP14.21□□□□□ -0.13
SMCHD1-205ENST00000581383 FKBP8Q14318 412 aa14.2□□□□□ -0.14
SMCHD1-205ENST00000581383 POTEMA6NI47 508 aa14.15□□□□□ -0.14
SMCHD1-205ENST00000581383 OTUD5Q96G74 571 aa14.14□□□□□ -0.15
SMCHD1-205ENST00000581383 CREBZFQ9NS37 354 aa14.11□□□□□ -0.15
SMCHD1-205ENST00000581383 PLEKHG5O94827 1062 aa14.1□□□□□ -0.15
SMCHD1-205ENST00000581383 POTEGQ6S5H5 508 aa14.07□□□□□ -0.16
SMCHD1-205ENST00000581383 ZNF579Q8NAF0 562 aaKnown RBP14.07□□□□□ -0.16
SMCHD1-205ENST00000581383 PROM2Q8N271 834 aa14.06□□□□□ -0.16
SMCHD1-205ENST00000581383 NPM1P06748 294 aaKnown RBP eCLIP14.05□□□□□ -0.16
SMCHD1-205ENST00000581383 MIER1Q8N108 512 aa14.03□□□□□ -0.16
SMCHD1-205ENST00000581383 PAK3O75914 559 aaPredicted RBP14.02□□□□□ -0.17
SMCHD1-205ENST00000581383 POTEB2H3BUK9 544 aa14.01□□□□□ -0.17
SMCHD1-205ENST00000581383 ZRANB1Q9UGI0 708 aa14.01□□□□□ -0.17
SMCHD1-205ENST00000581383 PCDH10Q9P2E7 1040 aa13.99□□□□□ -0.17
SMCHD1-205ENST00000581383 PLCD3Q8N3E9 789 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms