RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 PCBP2Q15366 365 aaKnown RBP eCLIP28■■■□□ 2.072e-8■■■■■ 114
CTDNEP1-210ENST00000574322 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP30.04■■■□□ 2.43e-10■■■■■ 88.3
CTDNEP1-210ENST00000574322 DDX59Q5T1V6 619 aaKnown RBP eCLIP26.98■■□□□ 1.914e-7■■■■■ 66.4
CTDNEP1-210ENST00000574322 SF3B1O75533 1304 aaKnown RBP eCLIP29.5■■■□□ 2.311e-8■■■■■ 60.3
CTDNEP1-210ENST00000574322 PCBP1Q15365 356 aaKnown RBP eCLIP30.53■■■□□ 2.486e-11■■■■■ 51.3
CTDNEP1-210ENST00000574322 HNRNPKP61978 463 aaKnown RBP eCLIP26.91■■□□□ 1.93e-48■■■■■ 50.4
CTDNEP1-210ENST00000574322 EFTUD2Q15029 972 aaKnown RBP eCLIP29.06■■■□□ 2.244e-7■■■■■ 34.6
CTDNEP1-210ENST00000574322 PUM2Q8TB72 1066 aaKnown RBP eCLIP27.31■■□□□ 1.966e-11■■■■■ 32.3
CTDNEP1-210ENST00000574322 AQRO60306 1485 aaKnown RBP eCLIP45.18■■■■■ 4.822e-6■■■■■ 28.6
CTDNEP1-210ENST00000574322 SF3B4Q15427 424 aaKnown RBP eCLIP24.66■■□□□ 1.549e-6■■■■■ 27.7
CTDNEP1-210ENST00000574322 ILF3Q12906 894 aaKnown RBP eCLIP27.21■■□□□ 1.955e-15■■■■□ 23
CTDNEP1-210ENST00000574322 TIA1P31483 386 aaKnown RBP eCLIP27.33■■□□□ 1.972e-7■■■■□ 21.6
CTDNEP1-210ENST00000574322 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP42.82■■■■■ 4.441e-25■■■■□ 20
CTDNEP1-210ENST00000574322 PPIGQ13427 754 aaKnown RBP eCLIP29.54■■■□□ 2.322e-6■■■□□ 18
CTDNEP1-210ENST00000574322 DDX3XO00571 662 aaKnown RBP eCLIP30.72■■■□□ 2.512e-12■■■□□ 15.7
CTDNEP1-210ENST00000574322 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.27■■■□□ 2.442e-6■■■□□ 15.1
CTDNEP1-210ENST00000574322 DHX30Q7L2E3 1194 aaKnown RBP eCLIP31.5■■■□□ 2.631e-10■■■□□ 14.6
CTDNEP1-210ENST00000574322 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.2■■□□□ 1.621e-37■■□□□ 14.3
CTDNEP1-210ENST00000574322 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP28.61■■■□□ 2.179e-8■■□□□ 13.7
CTDNEP1-210ENST00000574322 YBX3P16989 372 aaKnown RBP eCLIP33.28■■■□□ 2.921e-6■■□□□ 13.3
CTDNEP1-210ENST00000574322 PUM1Q14671 1186 aaKnown RBP eCLIP26.66■■□□□ 1.866e-18■■□□□ 12.7
CTDNEP1-210ENST00000574322 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.82■■■■■ 4.293e-9■■□□□ 12.3
CTDNEP1-210ENST00000574322 GRWD1Q9BQ67 446 aaKnown RBP eCLIP40.47■■■■■ 4.079e-7■■□□□ 12.2
CTDNEP1-210ENST00000574322 DDX55Q8NHQ9 600 aaKnown RBP eCLIP31.91■■■□□ 2.73e-14■■□□□ 12.2
CTDNEP1-210ENST00000574322 GTF2F1P35269 517 aaKnown RBP eCLIP31.1■■■□□ 2.577e-25■■□□□ 11.7
CTDNEP1-210ENST00000574322 DDX24Q9GZR7 859 aaKnown RBP eCLIP34.03■■■■□ 3.044e-6■□□□□ 11.1
CTDNEP1-210ENST00000574322 RBM22Q9NW64 420 aaKnown RBP eCLIP28.98■■■□□ 2.232e-6■□□□□ 11.1
CTDNEP1-210ENST00000574322 PABPC4Q13310 644 aaKnown RBP eCLIP31.61■■■□□ 2.656e-11■□□□□ 10.8
CTDNEP1-210ENST00000574322 PTBP1P26599 531 aaKnown RBP eCLIP25.23■■□□□ 1.635e-14■□□□□ 9.8
CTDNEP1-210ENST00000574322 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP22.4■■□□□ 1.185e-8■□□□□ 9.7
CTDNEP1-210ENST00000574322 LARP4Q71RC2 724 aaKnown RBP eCLIP27.95■■■□□ 2.062e-7■□□□□ 8.8
CTDNEP1-210ENST00000574322 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP31.97■■■□□ 2.711e-7■□□□□ 8.6
CTDNEP1-210ENST00000574322 METAP2P50579 478 aaKnown RBP eCLIP33.27■■■□□ 2.924e-6■□□□□ 8.6
Retrieved 33 of 33 RNA–protein pairs in 8.1 ms