RNA–Protein interactions for RNA: ENST00000570021.1

SIN3A-213, Transcript of SIN3 transcription regulator family member A, humanhuman

TSL 3

Gene SIN3A, Length 600 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3A-213ENST00000570021 AEBP2Q6ZN18 517 aaPredicted RBP29.6■■■□□ 2.33
SIN3A-213ENST00000570021 CHIC1Q5VXU3 224 aa27.96■■■□□ 2.07
SIN3A-213ENST00000570021 SENP3Q9H4L4 574 aaPredicted RBP25.34■■□□□ 1.65
SIN3A-213ENST00000570021 PHF23Q9BUL5 403 aaPredicted RBP24.95■■□□□ 1.58
SIN3A-213ENST00000570021 FOXD1Q16676 465 aa23.6■■□□□ 1.37
SIN3A-213ENST00000570021 POTEDQ86YR6 584 aa23.26■■□□□ 1.31
SIN3A-213ENST00000570021 PLPPR3Q6T4P5 718 aa22.27■■□□□ 1.16
SIN3A-213ENST00000570021 MSH5O43196 834 aa22.21■■□□□ 1.15
SIN3A-213ENST00000570021 PIAS4Q8N2W9 510 aaPredicted RBP22.03■■□□□ 1.12
SIN3A-213ENST00000570021 PPP6R1Q9UPN7 881 aa21.9■■□□□ 1.1
SIN3A-213ENST00000570021 ADRA2BP18089 450 aa21.83■■□□□ 1.09
SIN3A-213ENST00000570021 MAPK8IP2Q13387 824 aaPredicted RBP20.1■□□□□ 0.81
SIN3A-213ENST00000570021 DMRT2Q9Y5R5 561 aa20.05■□□□□ 0.8
SIN3A-213ENST00000570021 SCAF1Q9H7N4 1312 aaKnown RBP20.03■□□□□ 0.8
SIN3A-213ENST00000570021 PPP4R3CPQ6ZMV5 832 aa19.48■□□□□ 0.71
SIN3A-213ENST00000570021 CACNB1Q02641 598 aaPredicted RBP19.25■□□□□ 0.67
SIN3A-213ENST00000570021 DCAF8L1A6NGE4 600 aa19.24■□□□□ 0.67
SIN3A-213ENST00000570021 HOXD11P31277 338 aaPredicted RBP19.24■□□□□ 0.67
SIN3A-213ENST00000570021 CNKSR2Q8WXI2 1034 aa19.17■□□□□ 0.66
SIN3A-213ENST00000570021 RNF216Q9NWF9 866 aaPredicted RBP19.05■□□□□ 0.64
SIN3A-213ENST00000570021 RNF39Q9H2S5 420 aa18.9■□□□□ 0.62
SIN3A-213ENST00000570021 NCBP3Q53F19 620 aaKnown RBP18.71■□□□□ 0.59
SIN3A-213ENST00000570021 C1QBPQ07021 282 aaKnown RBP18.64■□□□□ 0.57
SIN3A-213ENST00000570021 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.57
SIN3A-213ENST00000570021 NPM3O75607 178 aaKnown RBP18.4■□□□□ 0.54
SIN3A-213ENST00000570021 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.527e-8■□□□□ 11.3
SIN3A-213ENST00000570021 POTEHQ6S545 545 aa17.96■□□□□ 0.47
SIN3A-213ENST00000570021 U3KPZ7 1027 aaPredicted RBP17.92■□□□□ 0.46
SIN3A-213ENST00000570021 KCNA4P22459 653 aa17.87■□□□□ 0.45
SIN3A-213ENST00000570021 CAPN15O75808 1086 aa17.7■□□□□ 0.42
SIN3A-213ENST00000570021 SPINK5Q9NQ38 1064 aaPredicted RBP17.7■□□□□ 0.42
SIN3A-213ENST00000570021 DSG3P32926 999 aa17.63■□□□□ 0.41
SIN3A-213ENST00000570021 SLC4A2P04920 1241 aa17.61■□□□□ 0.41
SIN3A-213ENST00000570021 APLP2Q06481 763 aa17.45■□□□□ 0.38
SIN3A-213ENST00000570021 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.39■□□□□ 0.37
SIN3A-213ENST00000570021 HNRNPUL2Q1KMD3 747 aaKnown RBP17.39■□□□□ 0.37
SIN3A-213ENST00000570021 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
SIN3A-213ENST00000570021 ZNF219Q9P2Y4 722 aaPredicted RBP17.35■□□□□ 0.37
SIN3A-213ENST00000570021 ABCB7O75027 752 aa17.26■□□□□ 0.35
SIN3A-213ENST00000570021 SAMD1Q6SPF0 538 aaPredicted RBP17.26■□□□□ 0.35
SIN3A-213ENST00000570021 MYCNP04198 464 aaPredicted RBP17.05■□□□□ 0.32
SIN3A-213ENST00000570021 RBM42Q9BTD8 480 aaKnown RBP16.87■□□□□ 0.29
SIN3A-213ENST00000570021 POLA2Q14181 598 aa16.86■□□□□ 0.29
SIN3A-213ENST00000570021 SLC4A1APQ9BWU0 796 aaKnown RBP16.85■□□□□ 0.29
SIN3A-213ENST00000570021 FOXD4L1Q9NU39 408 aa16.76■□□□□ 0.27
SIN3A-213ENST00000570021 ATF5Q9Y2D1 282 aaPredicted RBP16.62■□□□□ 0.25
SIN3A-213ENST00000570021 CHRDL2Q6WN34 429 aa16.55■□□□□ 0.24
SIN3A-213ENST00000570021 ZBTB12Q9Y330 459 aaPredicted RBP16.54■□□□□ 0.24
SIN3A-213ENST00000570021 AKT1S1Q96B36 256 aa16.42■□□□□ 0.22
SIN3A-213ENST00000570021 ZBTB22O15209 634 aa16.41■□□□□ 0.22
SIN3A-213ENST00000570021 OSCARQ8IYS5 282 aa16.32■□□□□ 0.2
SIN3A-213ENST00000570021 ATXN8OSP0DMR3 200 aa16.28■□□□□ 0.2
SIN3A-213ENST00000570021 SP7Q8TDD2 431 aaPredicted RBP16.27■□□□□ 0.2
SIN3A-213ENST00000570021 REM2Q8IYK8 340 aaPredicted RBP16.26■□□□□ 0.19
SIN3A-213ENST00000570021 PIP4P2Q8N4L2 257 aa16.1■□□□□ 0.17
SIN3A-213ENST00000570021 PITPNM1O00562 1244 aa16.09■□□□□ 0.17
SIN3A-213ENST00000570021 FBLN2P98095 1184 aa16.05■□□□□ 0.16
SIN3A-213ENST00000570021 SPDYE2BA6NHP3 402 aa15.99■□□□□ 0.15
SIN3A-213ENST00000570021 SPDYE6P0CI01 402 aa15.99■□□□□ 0.15
SIN3A-213ENST00000570021 FXR2P51116 673 aaKnown RBP eCLIP15.99■□□□□ 0.158e-6■■■■□ 21.8
SIN3A-213ENST00000570021 SPDYE2Q495Y8 402 aa15.99■□□□□ 0.15
SIN3A-213ENST00000570021 HAX1O00165 279 aa15.88■□□□□ 0.13
SIN3A-213ENST00000570021 MKRN4PQ13434 485 aaPredicted RBP15.86■□□□□ 0.13
SIN3A-213ENST00000570021 SPDYE1Q8NFV5 336 aaPredicted RBP15.77■□□□□ 0.12
SIN3A-213ENST00000570021 ZNF692Q9BU19 519 aaPredicted RBP15.77■□□□□ 0.12
SIN3A-213ENST00000570021 SSUH2Q9Y2M2 353 aa15.75■□□□□ 0.11
SIN3A-213ENST00000570021 CLEC11AQ9Y240 323 aa15.74■□□□□ 0.11
SIN3A-213ENST00000570021 PRKAR2AP13861 404 aaKnown RBP15.67■□□□□ 0.1
SIN3A-213ENST00000570021 EVX2Q03828 476 aa15.62■□□□□ 0.09
SIN3A-213ENST00000570021 PABPN1Q86U42 306 aaKnown RBP eCLIP15.52■□□□□ 0.08
SIN3A-213ENST00000570021 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
SIN3A-213ENST00000570021 C19orf67A6NJJ6 358 aa15.48■□□□□ 0.07
SIN3A-213ENST00000570021 PRR29P0C7W0 189 aa15.45■□□□□ 0.06
SIN3A-213ENST00000570021 CHADLQ6NUI6 762 aa15.44■□□□□ 0.06
SIN3A-213ENST00000570021 GABBR2O75899 941 aa15.29■□□□□ 0.04
SIN3A-213ENST00000570021 FARP1Q9Y4F1 1045 aaPredicted RBP15.21■□□□□ 0.03
SIN3A-213ENST00000570021 LHX8Q68G74 356 aa15.19■□□□□ 0.02
SIN3A-213ENST00000570021 EHMT2Q96KQ7 1210 aa15.19■□□□□ 0.02
SIN3A-213ENST00000570021 PLSCR2Q9NRY7 297 aa15.18■□□□□ 0.02
SIN3A-213ENST00000570021 CD44P16070 742 aaKnown RBP15.17■□□□□ 0.02
SIN3A-213ENST00000570021 STAG3Q9UJ98 1225 aa15.09■□□□□ 0.01
SIN3A-213ENST00000570021 SPDYE4A6NLX3 237 aa15.04■□□□□ -0
SIN3A-213ENST00000570021 CLCN6P51797 869 aa15.04■□□□□ -0
SIN3A-213ENST00000570021 CREBZFQ9NS37 354 aa15□□□□□ -0.01
SIN3A-213ENST00000570021 POTEIP0CG38 1075 aa14.95□□□□□ -0.02
SIN3A-213ENST00000570021 ZNF579Q8NAF0 562 aaKnown RBP14.93□□□□□ -0.02
SIN3A-213ENST00000570021 ZRANB1Q9UGI0 708 aa14.92□□□□□ -0.02
SIN3A-213ENST00000570021 DCBLD2Q96PD2 775 aa14.87□□□□□ -0.03
SIN3A-213ENST00000570021 PAK3O75914 559 aaPredicted RBP14.79□□□□□ -0.04
SIN3A-213ENST00000570021 NPM1P06748 294 aaKnown RBP eCLIP14.76□□□□□ -0.05
SIN3A-213ENST00000570021 GALR2O43603 387 aaPredicted RBP14.74□□□□□ -0.05
SIN3A-213ENST00000570021 MNX1P50219 401 aaPredicted RBP14.73□□□□□ -0.05
SIN3A-213ENST00000570021 PHF12Q96QT6 1004 aa14.68□□□□□ -0.06
SIN3A-213ENST00000570021 PROM2Q8N271 834 aa14.64□□□□□ -0.07
SIN3A-213ENST00000570021 MS4A3Q96HJ5 214 aa14.48□□□□□ -0.09
SIN3A-213ENST00000570021 PELP1Q8IZL8 1130 aaKnown RBP14.46□□□□□ -0.09
SIN3A-213ENST00000570021 TSPYL2Q9H2G4 693 aaPredicted RBP14.46□□□□□ -0.09
SIN3A-213ENST00000570021 POTEB2H3BUK9 544 aa14.45□□□□□ -0.1
SIN3A-213ENST00000570021 OTUD5Q96G74 571 aa14.45□□□□□ -0.1
SIN3A-213ENST00000570021 ASTLQ6HA08 431 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms