RNA–Protein interactions for RNA: ENST00000568186.5

TCF4-239, Transcript of transcription factor 4, humanhuman

TSL 2

Gene TCF4, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-239ENST00000568186 AEBP2Q6ZN18 517 aaPredicted RBP21.4■■□□□ 1.02
TCF4-239ENST00000568186 CHIC1Q5VXU3 224 aa20.2■□□□□ 0.82
TCF4-239ENST00000568186 SENP3Q9H4L4 574 aaPredicted RBP18.24■□□□□ 0.51
TCF4-239ENST00000568186 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
TCF4-239ENST00000568186 FOXD1Q16676 465 aa17.02■□□□□ 0.32
TCF4-239ENST00000568186 PLPPR3Q6T4P5 718 aa16.07■□□□□ 0.16
TCF4-239ENST00000568186 MSH5O43196 834 aa15.95■□□□□ 0.14
TCF4-239ENST00000568186 PIAS4Q8N2W9 510 aaPredicted RBP15.88■□□□□ 0.13
TCF4-239ENST00000568186 PPP6R1Q9UPN7 881 aa15.84■□□□□ 0.13
TCF4-239ENST00000568186 ADRA2BP18089 450 aa15.78■□□□□ 0.12
TCF4-239ENST00000568186 POTEDQ86YR6 584 aa15.76■□□□□ 0.11
TCF4-239ENST00000568186 MAPK8IP2Q13387 824 aaPredicted RBP14.52□□□□□ -0.09
TCF4-239ENST00000568186 DMRT2Q9Y5R5 561 aa14.45□□□□□ -0.1
TCF4-239ENST00000568186 SCAF1Q9H7N4 1312 aaKnown RBP14.39□□□□□ -0.11
TCF4-239ENST00000568186 PPP4R3CPQ6ZMV5 832 aa14.08□□□□□ -0.16
TCF4-239ENST00000568186 HOXD11P31277 338 aaPredicted RBP13.88□□□□□ -0.19
TCF4-239ENST00000568186 DCAF8L1A6NGE4 600 aa13.85□□□□□ -0.19
TCF4-239ENST00000568186 CNKSR2Q8WXI2 1034 aa13.84□□□□□ -0.19
TCF4-239ENST00000568186 CACNB1Q02641 598 aaPredicted RBP13.75□□□□□ -0.21
TCF4-239ENST00000568186 RNF216Q9NWF9 866 aaPredicted RBP13.74□□□□□ -0.21
TCF4-239ENST00000568186 RNF39Q9H2S5 420 aa13.62□□□□□ -0.23
TCF4-239ENST00000568186 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
TCF4-239ENST00000568186 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.26
TCF4-239ENST00000568186 C1QBPQ07021 282 aaKnown RBP13.39□□□□□ -0.27
TCF4-239ENST00000568186 NPM3O75607 178 aaKnown RBP13.33□□□□□ -0.28
TCF4-239ENST00000568186 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.21□□□□□ -0.29
TCF4-239ENST00000568186 KCNA4P22459 653 aa13□□□□□ -0.33
TCF4-239ENST00000568186 U3KPZ7 1027 aaPredicted RBP12.95□□□□□ -0.34
TCF4-239ENST00000568186 SPINK5Q9NQ38 1064 aaPredicted RBP12.79□□□□□ -0.36
TCF4-239ENST00000568186 SLC4A2P04920 1241 aa12.77□□□□□ -0.37
TCF4-239ENST00000568186 CAPN15O75808 1086 aa12.75□□□□□ -0.37
TCF4-239ENST00000568186 DSG3P32926 999 aa12.71□□□□□ -0.37
TCF4-239ENST00000568186 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
TCF4-239ENST00000568186 APLP2Q06481 763 aa12.53□□□□□ -0.4
TCF4-239ENST00000568186 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.5□□□□□ -0.41
TCF4-239ENST00000568186 HNRNPUL2Q1KMD3 747 aaKnown RBP12.5□□□□□ -0.41
TCF4-239ENST00000568186 ZNF219Q9P2Y4 722 aaPredicted RBP12.5□□□□□ -0.41
TCF4-239ENST00000568186 ABCB7O75027 752 aa12.47□□□□□ -0.41
TCF4-239ENST00000568186 SAMD1Q6SPF0 538 aaPredicted RBP12.45□□□□□ -0.42
TCF4-239ENST00000568186 MYCNP04198 464 aaPredicted RBP12.32□□□□□ -0.44
TCF4-239ENST00000568186 POTEHQ6S545 545 aa12.32□□□□□ -0.44
TCF4-239ENST00000568186 SLC4A1APQ9BWU0 796 aaKnown RBP12.24□□□□□ -0.45
TCF4-239ENST00000568186 POLA2Q14181 598 aa12.16□□□□□ -0.46
TCF4-239ENST00000568186 FOXD4L1Q9NU39 408 aa12.15□□□□□ -0.46
TCF4-239ENST00000568186 RBM42Q9BTD8 480 aaKnown RBP12.12□□□□□ -0.47
TCF4-239ENST00000568186 ATF5Q9Y2D1 282 aaPredicted RBP12.07□□□□□ -0.48
TCF4-239ENST00000568186 ZBTB22O15209 634 aa11.97□□□□□ -0.49
TCF4-239ENST00000568186 CHRDL2Q6WN34 429 aa11.92□□□□□ -0.5
TCF4-239ENST00000568186 ZBTB12Q9Y330 459 aaPredicted RBP11.9□□□□□ -0.5
TCF4-239ENST00000568186 OSCARQ8IYS5 282 aa11.82□□□□□ -0.52
TCF4-239ENST00000568186 AKT1S1Q96B36 256 aa11.82□□□□□ -0.52
TCF4-239ENST00000568186 ATXN8OSP0DMR3 200 aa11.76□□□□□ -0.53
TCF4-239ENST00000568186 REM2Q8IYK8 340 aaPredicted RBP11.71□□□□□ -0.53
TCF4-239ENST00000568186 PITPNM1O00562 1244 aa11.62□□□□□ -0.55
TCF4-239ENST00000568186 PIP4P2Q8N4L2 257 aa11.61□□□□□ -0.55
TCF4-239ENST00000568186 FBLN2P98095 1184 aa11.56□□□□□ -0.56
TCF4-239ENST00000568186 SPDYE2BA6NHP3 402 aa11.54□□□□□ -0.56
TCF4-239ENST00000568186 SPDYE6P0CI01 402 aa11.54□□□□□ -0.56
TCF4-239ENST00000568186 SPDYE2Q495Y8 402 aa11.54□□□□□ -0.56
TCF4-239ENST00000568186 FXR2P51116 673 aaKnown RBP eCLIP11.51□□□□□ -0.57
TCF4-239ENST00000568186 MKRN4PQ13434 485 aaPredicted RBP11.51□□□□□ -0.57
TCF4-239ENST00000568186 SP7Q8TDD2 431 aaPredicted RBP11.51□□□□□ -0.57
TCF4-239ENST00000568186 HAX1O00165 279 aa11.4□□□□□ -0.58
TCF4-239ENST00000568186 SSUH2Q9Y2M2 353 aa11.4□□□□□ -0.58
TCF4-239ENST00000568186 ZNF692Q9BU19 519 aaPredicted RBP11.37□□□□□ -0.59
TCF4-239ENST00000568186 SPDYE1Q8NFV5 336 aaPredicted RBP11.36□□□□□ -0.59
TCF4-239ENST00000568186 CLEC11AQ9Y240 323 aa11.34□□□□□ -0.59
TCF4-239ENST00000568186 PRKAR2AP13861 404 aaKnown RBP11.29□□□□□ -0.6
TCF4-239ENST00000568186 CSRNP3Q8WYN3 585 aa11.29□□□□□ -0.6
TCF4-239ENST00000568186 EVX2Q03828 476 aa11.28□□□□□ -0.6
TCF4-239ENST00000568186 PABPN1Q86U42 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
TCF4-239ENST00000568186 CHADLQ6NUI6 762 aa11.16□□□□□ -0.62
TCF4-239ENST00000568186 C19orf67A6NJJ6 358 aa11.15□□□□□ -0.62
TCF4-239ENST00000568186 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
TCF4-239ENST00000568186 EHMT2Q96KQ7 1210 aa11.11□□□□□ -0.63
TCF4-239ENST00000568186 GABBR2O75899 941 aa11.01□□□□□ -0.65
TCF4-239ENST00000568186 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
TCF4-239ENST00000568186 CD44P16070 742 aaKnown RBP10.94□□□□□ -0.66
TCF4-239ENST00000568186 SPDYE4A6NLX3 237 aa10.89□□□□□ -0.67
TCF4-239ENST00000568186 CREBZFQ9NS37 354 aa10.86□□□□□ -0.67
TCF4-239ENST00000568186 STAG3Q9UJ98 1225 aa10.85□□□□□ -0.67
TCF4-239ENST00000568186 POTEIP0CG38 1075 aa10.79□□□□□ -0.68
TCF4-239ENST00000568186 LHX8Q68G74 356 aa10.78□□□□□ -0.68
TCF4-239ENST00000568186 ZNF579Q8NAF0 562 aaKnown RBP10.77□□□□□ -0.69
TCF4-239ENST00000568186 CLCN6P51797 869 aa10.76□□□□□ -0.69
TCF4-239ENST00000568186 ZRANB1Q9UGI0 708 aa10.75□□□□□ -0.69
TCF4-239ENST00000568186 DCBLD2Q96PD2 775 aa10.68□□□□□ -0.7
TCF4-239ENST00000568186 MNX1P50219 401 aaPredicted RBP10.67□□□□□ -0.7
TCF4-239ENST00000568186 GALR2O43603 387 aaPredicted RBP10.65□□□□□ -0.7
TCF4-239ENST00000568186 PROM2Q8N271 834 aa10.64□□□□□ -0.71
TCF4-239ENST00000568186 PAK3O75914 559 aaPredicted RBP10.63□□□□□ -0.71
TCF4-239ENST00000568186 PHF12Q96QT6 1004 aa10.63□□□□□ -0.71
TCF4-239ENST00000568186 NPM1P06748 294 aaKnown RBP eCLIP10.62□□□□□ -0.71
TCF4-239ENST00000568186 MS4A3Q96HJ5 214 aa10.48□□□□□ -0.73
TCF4-239ENST00000568186 PELP1Q8IZL8 1130 aaKnown RBP10.45□□□□□ -0.74
TCF4-239ENST00000568186 TSPYL2Q9H2G4 693 aaPredicted RBP10.45□□□□□ -0.74
TCF4-239ENST00000568186 POTEB2H3BUK9 544 aa10.43□□□□□ -0.74
TCF4-239ENST00000568186 CCDC61Q9Y6R9 512 aa10.42□□□□□ -0.74
TCF4-239ENST00000568186 ASTLQ6HA08 431 aaPredicted RBP10.41□□□□□ -0.74
TCF4-239ENST00000568186 OTUD5Q96G74 571 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms