RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 AEBP2Q6ZN18 517 aaPredicted RBP22.02■■□□□ 1.12
VPS39-209ENST00000568029 CHIC1Q5VXU3 224 aa21.88■■□□□ 1.09
VPS39-209ENST00000568029 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
VPS39-209ENST00000568029 SENP3Q9H4L4 574 aaPredicted RBP18.73■□□□□ 0.59
VPS39-209ENST00000568029 PLPPR3Q6T4P5 718 aa17.93■□□□□ 0.46
VPS39-209ENST00000568029 FOXD1Q16676 465 aa17.3■□□□□ 0.36
VPS39-209ENST00000568029 PPP6R1Q9UPN7 881 aa16.82■□□□□ 0.28
VPS39-209ENST00000568029 ADRA2BP18089 450 aa16.81■□□□□ 0.28
VPS39-209ENST00000568029 PIAS4Q8N2W9 510 aaPredicted RBP16.35■□□□□ 0.21
VPS39-209ENST00000568029 MSH5O43196 834 aa16.31■□□□□ 0.2
VPS39-209ENST00000568029 POTEDQ86YR6 584 aa16.1■□□□□ 0.17
VPS39-209ENST00000568029 PPP4R3CPQ6ZMV5 832 aa15.79■□□□□ 0.12
VPS39-209ENST00000568029 KCNA4P22459 653 aa15.75■□□□□ 0.11
VPS39-209ENST00000568029 NCBP3Q53F19 620 aaKnown RBP15.53■□□□□ 0.08
VPS39-209ENST00000568029 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
VPS39-209ENST00000568029 CNKSR2Q8WXI2 1034 aa15.33■□□□□ 0.04
VPS39-209ENST00000568029 NPM3O75607 178 aaKnown RBP15.25■□□□□ 0.03
VPS39-209ENST00000568029 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
VPS39-209ENST00000568029 SLC4A1APQ9BWU0 796 aaKnown RBP15.08■□□□□ 0
VPS39-209ENST00000568029 DMRT2Q9Y5R5 561 aa15□□□□□ -0.01
VPS39-209ENST00000568029 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
VPS39-209ENST00000568029 RNF216Q9NWF9 866 aaPredicted RBP14.96□□□□□ -0.01
VPS39-209ENST00000568029 EHMT2Q96KQ7 1210 aa14.91□□□□□ -0.02
VPS39-209ENST00000568029 HOXD11P31277 338 aaPredicted RBP14.83□□□□□ -0.04
VPS39-209ENST00000568029 CSRNP3Q8WYN3 585 aa14.69□□□□□ -0.06
VPS39-209ENST00000568029 ZBTB22O15209 634 aa14.49□□□□□ -0.09
VPS39-209ENST00000568029 FOXD4L1Q9NU39 408 aa14.47□□□□□ -0.09
VPS39-209ENST00000568029 SLC4A2P04920 1241 aa14.32□□□□□ -0.12
VPS39-209ENST00000568029 DCAF8L1A6NGE4 600 aa14.17□□□□□ -0.14
VPS39-209ENST00000568029 MYCNP04198 464 aaPredicted RBP14.12□□□□□ -0.15
VPS39-209ENST00000568029 CACNB1Q02641 598 aaPredicted RBP14.07□□□□□ -0.16
VPS39-209ENST00000568029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.04□□□□□ -0.16
VPS39-209ENST00000568029 ATXN8OSP0DMR3 200 aa14.02□□□□□ -0.17
VPS39-209ENST00000568029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.9□□□□□ -0.18
VPS39-209ENST00000568029 HNRNPUL2Q1KMD3 747 aaKnown RBP13.9□□□□□ -0.18
VPS39-209ENST00000568029 U3KPZ7 1027 aaPredicted RBP13.88□□□□□ -0.19
VPS39-209ENST00000568029 RNF39Q9H2S5 420 aa13.87□□□□□ -0.19
VPS39-209ENST00000568029 SAMD1Q6SPF0 538 aaPredicted RBP13.84□□□□□ -0.19
VPS39-209ENST00000568029 NISCHQ9Y2I1 1504 aa13.72□□□□□ -0.21
VPS39-209ENST00000568029 APLP2Q06481 763 aa13.7□□□□□ -0.22
VPS39-209ENST00000568029 C1QBPQ07021 282 aaKnown RBP13.7□□□□□ -0.22
VPS39-209ENST00000568029 ATF5Q9Y2D1 282 aaPredicted RBP13.61□□□□□ -0.23
VPS39-209ENST00000568029 ZNF219Q9P2Y4 722 aaPredicted RBP13.44□□□□□ -0.26
VPS39-209ENST00000568029 SPINK5Q9NQ38 1064 aaPredicted RBP13.33□□□□□ -0.28
VPS39-209ENST00000568029 CAPN15O75808 1086 aa13.27□□□□□ -0.29
VPS39-209ENST00000568029 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
VPS39-209ENST00000568029 FKBP8Q14318 412 aa13.22□□□□□ -0.29
VPS39-209ENST00000568029 POLA2Q14181 598 aa13.17□□□□□ -0.3
VPS39-209ENST00000568029 FBLN2P98095 1184 aa13.11□□□□□ -0.31
VPS39-209ENST00000568029 ZBTB12Q9Y330 459 aaPredicted RBP13.1□□□□□ -0.31
VPS39-209ENST00000568029 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
VPS39-209ENST00000568029 ABCC9O60706 1549 aa13.07□□□□□ -0.32
VPS39-209ENST00000568029 DSG3P32926 999 aa13.04□□□□□ -0.32
VPS39-209ENST00000568029 ABCB7O75027 752 aa13.01□□□□□ -0.33
VPS39-209ENST00000568029 SPDYE4A6NLX3 237 aa12.95□□□□□ -0.34
VPS39-209ENST00000568029 PROM2Q8N271 834 aa12.89□□□□□ -0.35
VPS39-209ENST00000568029 FBXO3Q9UK99 471 aa12.79□□□□□ -0.36
VPS39-209ENST00000568029 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
VPS39-209ENST00000568029 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
VPS39-209ENST00000568029 SPDYE2Q495Y8 402 aa12.74□□□□□ -0.37
VPS39-209ENST00000568029 AMER1Q5JTC6 1135 aaPredicted RBP12.7□□□□□ -0.38
VPS39-209ENST00000568029 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
VPS39-209ENST00000568029 SSUH2Q9Y2M2 353 aa12.67□□□□□ -0.38
VPS39-209ENST00000568029 ZNF692Q9BU19 519 aaPredicted RBP12.66□□□□□ -0.38
VPS39-209ENST00000568029 POTEHQ6S545 545 aa12.62□□□□□ -0.39
VPS39-209ENST00000568029 RTN4Q9NQC3 1192 aaKnown RBP12.57□□□□□ -0.4
VPS39-209ENST00000568029 VASPP50552 380 aaPredicted RBP12.54□□□□□ -0.4
VPS39-209ENST00000568029 CCDC180Q9P1Z9 1646 aa12.54□□□□□ -0.4
VPS39-209ENST00000568029 PABPN1Q86U42 306 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS39-209ENST00000568029 STAG3Q9UJ98 1225 aa12.49□□□□□ -0.41
VPS39-209ENST00000568029 RBM42Q9BTD8 480 aaKnown RBP12.48□□□□□ -0.41
VPS39-209ENST00000568029 AKT1S1Q96B36 256 aa12.38□□□□□ -0.43
VPS39-209ENST00000568029 IFNLR1Q8IU57 520 aaPredicted RBP12.37□□□□□ -0.43
VPS39-209ENST00000568029 SPDYE1Q8NFV5 336 aaPredicted RBP12.27□□□□□ -0.45
VPS39-209ENST00000568029 PLCD3Q8N3E9 789 aa12.24□□□□□ -0.45
VPS39-209ENST00000568029 MIER1Q8N108 512 aa12.22□□□□□ -0.45
VPS39-209ENST00000568029 PLEKHG5O94827 1062 aa12.21□□□□□ -0.45
VPS39-209ENST00000568029 REM2Q8IYK8 340 aaPredicted RBP12.21□□□□□ -0.45
VPS39-209ENST00000568029 SPOCK2Q92563 424 aa12.21□□□□□ -0.45
VPS39-209ENST00000568029 KLHL34Q8N239 644 aa12.2□□□□□ -0.46
VPS39-209ENST00000568029 ZBTB47Q9UFB7 747 aaPredicted RBP12.2□□□□□ -0.46
VPS39-209ENST00000568029 CHRDL2Q6WN34 429 aa12.15□□□□□ -0.46
VPS39-209ENST00000568029 RB1CC1Q8TDY2 1594 aa12.13□□□□□ -0.47
VPS39-209ENST00000568029 PKD2Q13563 968 aa12.09□□□□□ -0.47
VPS39-209ENST00000568029 PRR29P0C7W0 189 aa12.08□□□□□ -0.48
VPS39-209ENST00000568029 CLEC11AQ9Y240 323 aa12.08□□□□□ -0.48
VPS39-209ENST00000568029 PITPNM1O00562 1244 aa12.05□□□□□ -0.48
VPS39-209ENST00000568029 UNC13AQ9UPW8 1703 aa12.05□□□□□ -0.48
VPS39-209ENST00000568029 CREBZFQ9NS37 354 aa12.01□□□□□ -0.49
VPS39-209ENST00000568029 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
VPS39-209ENST00000568029 MNX1P50219 401 aaPredicted RBP11.95□□□□□ -0.5
VPS39-209ENST00000568029 ECM2O94769 699 aaPredicted RBP11.93□□□□□ -0.5
VPS39-209ENST00000568029 NUBP1P53384 320 aa11.93□□□□□ -0.5
VPS39-209ENST00000568029 BICRAQ9NZM4 1560 aa11.92□□□□□ -0.5
VPS39-209ENST00000568029 SLC24A1O60721 1099 aa11.91□□□□□ -0.5
VPS39-209ENST00000568029 GSE1Q14687 1217 aa11.91□□□□□ -0.5
VPS39-209ENST00000568029 NACADO15069 1562 aa11.89□□□□□ -0.51
VPS39-209ENST00000568029 CIZ1Q9ULV3 898 aaPredicted RBP11.88□□□□□ -0.51
VPS39-209ENST00000568029 NPM1P06748 294 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS39-209ENST00000568029 DNAJC5Q9H3Z4 198 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms