RNA–Protein interactions for RNA: ENST00000567944.1

HERPUD1-212, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 435 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-212ENST00000567944 AEBP2Q6ZN18 517 aaPredicted RBP22.13■■□□□ 1.13
HERPUD1-212ENST00000567944 CHIC1Q5VXU3 224 aa20.59■□□□□ 0.89
HERPUD1-212ENST00000567944 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
HERPUD1-212ENST00000567944 PHF23Q9BUL5 403 aaPredicted RBP18.61■□□□□ 0.57
HERPUD1-212ENST00000567944 FOXD1Q16676 465 aa17.69■□□□□ 0.42
HERPUD1-212ENST00000567944 POTEDQ86YR6 584 aa17.03■□□□□ 0.32
HERPUD1-212ENST00000567944 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
HERPUD1-212ENST00000567944 MSH5O43196 834 aa16.64■□□□□ 0.25
HERPUD1-212ENST00000567944 PIAS4Q8N2W9 510 aaPredicted RBP16.42■□□□□ 0.22
HERPUD1-212ENST00000567944 PPP6R1Q9UPN7 881 aa16.25■□□□□ 0.19
HERPUD1-212ENST00000567944 ADRA2BP18089 450 aa16.18■□□□□ 0.18
HERPUD1-212ENST00000567944 MAPK8IP2Q13387 824 aaPredicted RBP15.01□□□□□ -0.01
HERPUD1-212ENST00000567944 DMRT2Q9Y5R5 561 aa14.9□□□□□ -0.02
HERPUD1-212ENST00000567944 PPP4R3CPQ6ZMV5 832 aa14.74□□□□□ -0.05
HERPUD1-212ENST00000567944 SCAF1Q9H7N4 1312 aaKnown RBP14.69□□□□□ -0.06
HERPUD1-212ENST00000567944 CACNB1Q02641 598 aaPredicted RBP14.6□□□□□ -0.07
HERPUD1-212ENST00000567944 KCNA4P22459 653 aa14.56□□□□□ -0.08
HERPUD1-212ENST00000567944 DCAF8L1A6NGE4 600 aa14.4□□□□□ -0.1
HERPUD1-212ENST00000567944 NCBP3Q53F19 620 aaKnown RBP14.29□□□□□ -0.12
HERPUD1-212ENST00000567944 CNKSR2Q8WXI2 1034 aa14.28□□□□□ -0.12
HERPUD1-212ENST00000567944 NPM3O75607 178 aaKnown RBP14.21□□□□□ -0.13
HERPUD1-212ENST00000567944 RNF39Q9H2S5 420 aa14.19□□□□□ -0.14
HERPUD1-212ENST00000567944 HOXD11P31277 338 aaPredicted RBP14.17□□□□□ -0.14
HERPUD1-212ENST00000567944 RNF216Q9NWF9 866 aaPredicted RBP14□□□□□ -0.17
HERPUD1-212ENST00000567944 C1QBPQ07021 282 aaKnown RBP13.93□□□□□ -0.18
HERPUD1-212ENST00000567944 SLC4A1APQ9BWU0 796 aaKnown RBP13.81□□□□□ -0.2
HERPUD1-212ENST00000567944 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
HERPUD1-212ENST00000567944 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.55□□□□□ -0.24
HERPUD1-212ENST00000567944 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
HERPUD1-212ENST00000567944 ZBTB22O15209 634 aa13.46□□□□□ -0.25
HERPUD1-212ENST00000567944 SLC4A2P04920 1241 aa13.44□□□□□ -0.26
HERPUD1-212ENST00000567944 CSRNP3Q8WYN3 585 aa13.42□□□□□ -0.26
HERPUD1-212ENST00000567944 FOXD4L1Q9NU39 408 aa13.3□□□□□ -0.28
HERPUD1-212ENST00000567944 POTEHQ6S545 545 aa13.25□□□□□ -0.29
HERPUD1-212ENST00000567944 U3KPZ7 1027 aaPredicted RBP13.22□□□□□ -0.29
HERPUD1-212ENST00000567944 SPINK5Q9NQ38 1064 aaPredicted RBP13.19□□□□□ -0.3
HERPUD1-212ENST00000567944 CAPN15O75808 1086 aa13.17□□□□□ -0.3
HERPUD1-212ENST00000567944 DSG3P32926 999 aa13.17□□□□□ -0.3
HERPUD1-212ENST00000567944 MYCNP04198 464 aaPredicted RBP13.06□□□□□ -0.32
HERPUD1-212ENST00000567944 TRHP20396 242 aaPredicted RBP12.88□□□□□ -0.35
HERPUD1-212ENST00000567944 ABCB7O75027 752 aa12.87□□□□□ -0.35
HERPUD1-212ENST00000567944 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.83□□□□□ -0.36
HERPUD1-212ENST00000567944 ATXN8OSP0DMR3 200 aa12.83□□□□□ -0.36
HERPUD1-212ENST00000567944 HNRNPUL2Q1KMD3 747 aaKnown RBP12.83□□□□□ -0.36
HERPUD1-212ENST00000567944 SAMD1Q6SPF0 538 aaPredicted RBP12.82□□□□□ -0.36
HERPUD1-212ENST00000567944 ATF5Q9Y2D1 282 aaPredicted RBP12.82□□□□□ -0.36
HERPUD1-212ENST00000567944 ZNF219Q9P2Y4 722 aaPredicted RBP12.74□□□□□ -0.37
HERPUD1-212ENST00000567944 APLP2Q06481 763 aa12.7□□□□□ -0.38
HERPUD1-212ENST00000567944 RBM42Q9BTD8 480 aaKnown RBP12.51□□□□□ -0.41
HERPUD1-212ENST00000567944 CHRDL2Q6WN34 429 aa12.46□□□□□ -0.41
HERPUD1-212ENST00000567944 POLA2Q14181 598 aa12.42□□□□□ -0.42
HERPUD1-212ENST00000567944 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
HERPUD1-212ENST00000567944 SP7Q8TDD2 431 aaPredicted RBP12.21□□□□□ -0.45
HERPUD1-212ENST00000567944 AKT1S1Q96B36 256 aa12.16□□□□□ -0.46
HERPUD1-212ENST00000567944 FBLN2P98095 1184 aa12.1□□□□□ -0.47
HERPUD1-212ENST00000567944 ZBTB12Q9Y330 459 aaPredicted RBP12.1□□□□□ -0.47
HERPUD1-212ENST00000567944 REM2Q8IYK8 340 aaPredicted RBP12.09□□□□□ -0.47
HERPUD1-212ENST00000567944 PIP4P2Q8N4L2 257 aa12.09□□□□□ -0.47
HERPUD1-212ENST00000567944 FKBP8Q14318 412 aa12.04□□□□□ -0.48
HERPUD1-212ENST00000567944 OSCARQ8IYS5 282 aa12.04□□□□□ -0.48
HERPUD1-212ENST00000567944 HAX1O00165 279 aa12□□□□□ -0.49
HERPUD1-212ENST00000567944 PITPNM1O00562 1244 aa11.97□□□□□ -0.49
HERPUD1-212ENST00000567944 SPDYE4A6NLX3 237 aa11.94□□□□□ -0.5
HERPUD1-212ENST00000567944 FXR2P51116 673 aaKnown RBP eCLIP11.92□□□□□ -0.5
HERPUD1-212ENST00000567944 EVX2Q03828 476 aa11.87□□□□□ -0.51
HERPUD1-212ENST00000567944 PROM2Q8N271 834 aa11.85□□□□□ -0.51
HERPUD1-212ENST00000567944 SPDYE2BA6NHP3 402 aa11.84□□□□□ -0.51
HERPUD1-212ENST00000567944 SPDYE6P0CI01 402 aa11.84□□□□□ -0.51
HERPUD1-212ENST00000567944 SPDYE2Q495Y8 402 aa11.84□□□□□ -0.51
HERPUD1-212ENST00000567944 SSUH2Q9Y2M2 353 aa11.82□□□□□ -0.52
HERPUD1-212ENST00000567944 ZNF692Q9BU19 519 aaPredicted RBP11.8□□□□□ -0.52
HERPUD1-212ENST00000567944 PABPN1Q86U42 306 aaKnown RBP eCLIP11.67□□□□□ -0.54
HERPUD1-212ENST00000567944 PRKAR2AP13861 404 aaKnown RBP11.66□□□□□ -0.54
HERPUD1-212ENST00000567944 CLEC11AQ9Y240 323 aa11.65□□□□□ -0.54
HERPUD1-212ENST00000567944 SPDYE1Q8NFV5 336 aaPredicted RBP11.57□□□□□ -0.56
HERPUD1-212ENST00000567944 C19orf67A6NJJ6 358 aa11.56□□□□□ -0.56
HERPUD1-212ENST00000567944 GABBR2O75899 941 aa11.52□□□□□ -0.57
HERPUD1-212ENST00000567944 FBXO3Q9UK99 471 aa11.52□□□□□ -0.57
HERPUD1-212ENST00000567944 CHADLQ6NUI6 762 aa11.49□□□□□ -0.57
HERPUD1-212ENST00000567944 LHX8Q68G74 356 aa11.47□□□□□ -0.57
HERPUD1-212ENST00000567944 VASPP50552 380 aaPredicted RBP11.44□□□□□ -0.58
HERPUD1-212ENST00000567944 STAG3Q9UJ98 1225 aa11.43□□□□□ -0.58
HERPUD1-212ENST00000567944 PRR29P0C7W0 189 aa11.35□□□□□ -0.59
HERPUD1-212ENST00000567944 IFNLR1Q8IU57 520 aaPredicted RBP11.34□□□□□ -0.59
HERPUD1-212ENST00000567944 POTEIP0CG38 1075 aa11.3□□□□□ -0.6
HERPUD1-212ENST00000567944 CD44P16070 742 aaKnown RBP11.27□□□□□ -0.61
HERPUD1-212ENST00000567944 MIER1Q8N108 512 aa11.27□□□□□ -0.61
HERPUD1-212ENST00000567944 CREBZFQ9NS37 354 aa11.27□□□□□ -0.61
HERPUD1-212ENST00000567944 PLCD3Q8N3E9 789 aa11.24□□□□□ -0.61
HERPUD1-212ENST00000567944 MNX1P50219 401 aaPredicted RBP11.21□□□□□ -0.61
HERPUD1-212ENST00000567944 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
HERPUD1-212ENST00000567944 RTN4Q9NQC3 1192 aaKnown RBP11.18□□□□□ -0.62
HERPUD1-212ENST00000567944 KLHL34Q8N239 644 aa11.14□□□□□ -0.63
HERPUD1-212ENST00000567944 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
HERPUD1-212ENST00000567944 SPOCK2Q92563 424 aa11.11□□□□□ -0.63
HERPUD1-212ENST00000567944 DCBLD2Q96PD2 775 aa11.11□□□□□ -0.63
HERPUD1-212ENST00000567944 PLEKHG5O94827 1062 aa11.1□□□□□ -0.63
HERPUD1-212ENST00000567944 AMER1Q5JTC6 1135 aaPredicted RBP11.1□□□□□ -0.63
HERPUD1-212ENST00000567944 NUBP1P53384 320 aa11.07□□□□□ -0.64
HERPUD1-212ENST00000567944 ZBTB47Q9UFB7 747 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms