RNA–Protein interactions for RNA: ENST00000567698.1

SHCBP1-206, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 2

Gene SHCBP1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-206ENST00000567698 AEBP2Q6ZN18 517 aaPredicted RBP24.55■■□□□ 1.52
SHCBP1-206ENST00000567698 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
SHCBP1-206ENST00000567698 PHF23Q9BUL5 403 aaPredicted RBP21.33■■□□□ 1.01
SHCBP1-206ENST00000567698 SENP3Q9H4L4 574 aaPredicted RBP20.62■□□□□ 0.89
SHCBP1-206ENST00000567698 PLPPR3Q6T4P5 718 aa19.62■□□□□ 0.73
SHCBP1-206ENST00000567698 FOXD1Q16676 465 aa19.21■□□□□ 0.67
SHCBP1-206ENST00000567698 PPP6R1Q9UPN7 881 aa18.73■□□□□ 0.59
SHCBP1-206ENST00000567698 ADRA2BP18089 450 aa18.67■□□□□ 0.58
SHCBP1-206ENST00000567698 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
SHCBP1-206ENST00000567698 MSH5O43196 834 aa17.49■□□□□ 0.39
SHCBP1-206ENST00000567698 PPP4R3CPQ6ZMV5 832 aa17.36■□□□□ 0.37
SHCBP1-206ENST00000567698 KCNA4P22459 653 aa17.28■□□□□ 0.36
SHCBP1-206ENST00000567698 SCAF1Q9H7N4 1312 aaKnown RBP16.9■□□□□ 0.3
SHCBP1-206ENST00000567698 MAPK8IP2Q13387 824 aaPredicted RBP16.89■□□□□ 0.29
SHCBP1-206ENST00000567698 NCBP3Q53F19 620 aaKnown RBP16.86■□□□□ 0.29
SHCBP1-206ENST00000567698 CNKSR2Q8WXI2 1034 aa16.79■□□□□ 0.28
SHCBP1-206ENST00000567698 NPM3O75607 178 aaKnown RBP16.76■□□□□ 0.27
SHCBP1-206ENST00000567698 DMRT2Q9Y5R5 561 aa16.56■□□□□ 0.24
SHCBP1-206ENST00000567698 SLC4A1APQ9BWU0 796 aaKnown RBP16.42■□□□□ 0.22
SHCBP1-206ENST00000567698 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
SHCBP1-206ENST00000567698 HOXD11P31277 338 aaPredicted RBP16.35■□□□□ 0.21
SHCBP1-206ENST00000567698 DNAJC5BQ9UF47 199 aa16.32■□□□□ 0.2
SHCBP1-206ENST00000567698 EHMT2Q96KQ7 1210 aa16.22■□□□□ 0.19
SHCBP1-206ENST00000567698 CSRNP3Q8WYN3 585 aa16.04■□□□□ 0.16
SHCBP1-206ENST00000567698 ZBTB22O15209 634 aa15.99■□□□□ 0.15
SHCBP1-206ENST00000567698 SLC4A2P04920 1241 aa15.83■□□□□ 0.12
SHCBP1-206ENST00000567698 FOXD4L1Q9NU39 408 aa15.76■□□□□ 0.11
SHCBP1-206ENST00000567698 DCAF8L1A6NGE4 600 aa15.67■□□□□ 0.1
SHCBP1-206ENST00000567698 POTEDQ86YR6 584 aa15.59■□□□□ 0.09
SHCBP1-206ENST00000567698 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.06
SHCBP1-206ENST00000567698 MYCNP04198 464 aaPredicted RBP15.41■□□□□ 0.06
SHCBP1-206ENST00000567698 U3KPZ7 1027 aaPredicted RBP15.35■□□□□ 0.05
SHCBP1-206ENST00000567698 ATXN8OSP0DMR3 200 aa15.2■□□□□ 0.02
SHCBP1-206ENST00000567698 ATF5Q9Y2D1 282 aaPredicted RBP15.12■□□□□ 0.01
SHCBP1-206ENST00000567698 RNF39Q9H2S5 420 aa15.11■□□□□ 0.01
SHCBP1-206ENST00000567698 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.06■□□□□ 0
SHCBP1-206ENST00000567698 HNRNPUL2Q1KMD3 747 aaKnown RBP15.06■□□□□ 0
SHCBP1-206ENST00000567698 SAMD1Q6SPF0 538 aaPredicted RBP15.06■□□□□ 0
SHCBP1-206ENST00000567698 C1QBPQ07021 282 aaKnown RBP14.86□□□□□ -0.03
SHCBP1-206ENST00000567698 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
SHCBP1-206ENST00000567698 APLP2Q06481 763 aa14.8□□□□□ -0.04
SHCBP1-206ENST00000567698 ZNF219Q9P2Y4 722 aaPredicted RBP14.74□□□□□ -0.05
SHCBP1-206ENST00000567698 CAPN15O75808 1086 aa14.64□□□□□ -0.07
SHCBP1-206ENST00000567698 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
SHCBP1-206ENST00000567698 POLA2Q14181 598 aa14.5□□□□□ -0.09
SHCBP1-206ENST00000567698 MKRN4PQ13434 485 aaPredicted RBP14.47□□□□□ -0.09
SHCBP1-206ENST00000567698 DSG3P32926 999 aa14.46□□□□□ -0.09
SHCBP1-206ENST00000567698 ABCB7O75027 752 aa14.45□□□□□ -0.1
SHCBP1-206ENST00000567698 CACNB1Q02641 598 aaPredicted RBP14.42□□□□□ -0.1
SHCBP1-206ENST00000567698 FKBP8Q14318 412 aa14.38□□□□□ -0.11
SHCBP1-206ENST00000567698 FBLN2P98095 1184 aa14.25□□□□□ -0.13
SHCBP1-206ENST00000567698 ZBTB12Q9Y330 459 aaPredicted RBP14.2□□□□□ -0.14
SHCBP1-206ENST00000567698 SPDYE4A6NLX3 237 aa14.13□□□□□ -0.15
SHCBP1-206ENST00000567698 PROM2Q8N271 834 aa14.09□□□□□ -0.15
SHCBP1-206ENST00000567698 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
SHCBP1-206ENST00000567698 SPDYE2BA6NHP3 402 aa13.91□□□□□ -0.18
SHCBP1-206ENST00000567698 SPDYE6P0CI01 402 aa13.91□□□□□ -0.18
SHCBP1-206ENST00000567698 SPDYE2Q495Y8 402 aa13.91□□□□□ -0.18
SHCBP1-206ENST00000567698 SSUH2Q9Y2M2 353 aa13.91□□□□□ -0.18
SHCBP1-206ENST00000567698 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
SHCBP1-206ENST00000567698 PABPN1Q86U42 306 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHCBP1-206ENST00000567698 FBXO3Q9UK99 471 aa13.72□□□□□ -0.21
SHCBP1-206ENST00000567698 VASPP50552 380 aaPredicted RBP13.63□□□□□ -0.23
SHCBP1-206ENST00000567698 RBM42Q9BTD8 480 aaKnown RBP13.63□□□□□ -0.23
SHCBP1-206ENST00000567698 AKT1S1Q96B36 256 aa13.59□□□□□ -0.23
SHCBP1-206ENST00000567698 RTN4Q9NQC3 1192 aaKnown RBP13.58□□□□□ -0.24
SHCBP1-206ENST00000567698 IFNLR1Q8IU57 520 aaPredicted RBP13.52□□□□□ -0.25
SHCBP1-206ENST00000567698 AMER1Q5JTC6 1135 aaPredicted RBP13.5□□□□□ -0.25
SHCBP1-206ENST00000567698 STAG3Q9UJ98 1225 aa13.5□□□□□ -0.25
SHCBP1-206ENST00000567698 REM2Q8IYK8 340 aaPredicted RBP13.49□□□□□ -0.25
SHCBP1-206ENST00000567698 SPDYE1Q8NFV5 336 aaPredicted RBP13.4□□□□□ -0.26
SHCBP1-206ENST00000567698 PITPNM1O00562 1244 aa13.35□□□□□ -0.27
SHCBP1-206ENST00000567698 MIER1Q8N108 512 aa13.3□□□□□ -0.28
SHCBP1-206ENST00000567698 CLEC11AQ9Y240 323 aa13.3□□□□□ -0.28
SHCBP1-206ENST00000567698 PLCD3Q8N3E9 789 aa13.29□□□□□ -0.28
SHCBP1-206ENST00000567698 CREBZFQ9NS37 354 aa13.25□□□□□ -0.29
SHCBP1-206ENST00000567698 PRR29P0C7W0 189 aa13.23□□□□□ -0.29
SHCBP1-206ENST00000567698 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
SHCBP1-206ENST00000567698 KLHL34Q8N239 644 aa13.21□□□□□ -0.29
SHCBP1-206ENST00000567698 SPOCK2Q92563 424 aa13.21□□□□□ -0.29
SHCBP1-206ENST00000567698 PKD2Q13563 968 aa13.18□□□□□ -0.3
SHCBP1-206ENST00000567698 PLEKHG5O94827 1062 aa13.1□□□□□ -0.31
SHCBP1-206ENST00000567698 ZBTB47Q9UFB7 747 aaPredicted RBP13.1□□□□□ -0.31
SHCBP1-206ENST00000567698 NUBP1P53384 320 aa13.09□□□□□ -0.31
SHCBP1-206ENST00000567698 FXR2P51116 673 aaKnown RBP eCLIP13.07□□□□□ -0.32
SHCBP1-206ENST00000567698 CHADLQ6NUI6 762 aa13.05□□□□□ -0.32
SHCBP1-206ENST00000567698 CHRDL2Q6WN34 429 aa13.04□□□□□ -0.32
SHCBP1-206ENST00000567698 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
SHCBP1-206ENST00000567698 PRKAR2AP13861 404 aaKnown RBP12.96□□□□□ -0.33
SHCBP1-206ENST00000567698 RASEFQ8IZ41 740 aa12.96□□□□□ -0.33
SHCBP1-206ENST00000567698 FARP1Q9Y4F1 1045 aaPredicted RBP12.94□□□□□ -0.34
SHCBP1-206ENST00000567698 ECM2O94769 699 aaPredicted RBP12.92□□□□□ -0.34
SHCBP1-206ENST00000567698 CIZ1Q9ULV3 898 aaPredicted RBP12.92□□□□□ -0.34
SHCBP1-206ENST00000567698 RGL2O15211 777 aa12.89□□□□□ -0.35
SHCBP1-206ENST00000567698 NPM1P06748 294 aaKnown RBP eCLIP12.88□□□□□ -0.35
SHCBP1-206ENST00000567698 GSE1Q14687 1217 aa12.87□□□□□ -0.35
SHCBP1-206ENST00000567698 DCAF8Q5TAQ9 597 aa12.84□□□□□ -0.35
SHCBP1-206ENST00000567698 RNF25Q96BH1 459 aaPredicted RBP12.83□□□□□ -0.36
SHCBP1-206ENST00000567698 FAM212AQ96EL1 285 aa12.83□□□□□ -0.36
SHCBP1-206ENST00000567698 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms