RNA–Protein interactions for RNA: ENST00000563149.1

USB1-207, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2 BASIC

Gene USB1, Length 1,751 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-207ENST00000563149 NISCHQ9Y2I1 1504 aa27.07■■□□□ 1.92
USB1-207ENST00000563149 CCDC180Q9P1Z9 1646 aa23.11■■□□□ 1.29
USB1-207ENST00000563149 ZCCHC6Q5VYS8 1495 aaKnown RBP22.93■■□□□ 1.26
USB1-207ENST00000563149 SHROOM4Q9ULL8 1493 aa22.8■■□□□ 1.24
USB1-207ENST00000563149 SUPT5HO00267 1087 aaKnown RBP22.45■■□□□ 1.18
USB1-207ENST00000563149 DCAF1Q9Y4B6 1507 aa22.38■■□□□ 1.17
USB1-207ENST00000563149 DCAF8L2P0C7V8 631 aa22.1■■□□□ 1.13
USB1-207ENST00000563149 CHIC1Q5VXU3 224 aa22■■□□□ 1.11
USB1-207ENST00000563149 MYO15BQ96JP2 1530 aa21.85■■□□□ 1.09
USB1-207ENST00000563149 ABCC9O60706 1549 aa21.64■■□□□ 1.05
USB1-207ENST00000563149 HRCP23327 699 aa21.48■■□□□ 1.03
USB1-207ENST00000563149 SCRIBQ14160 1630 aa21.42■■□□□ 1.02
USB1-207ENST00000563149 RSF1Q96T23 1441 aaPredicted RBP21.39■■□□□ 1.01
USB1-207ENST00000563149 NACADO15069 1562 aa21.32■■□□□ 1
USB1-207ENST00000563149 PCGF6Q9BYE7 350 aa21.28■■□□□ 1
USB1-207ENST00000563149 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
USB1-207ENST00000563149 LOC105371045A0A1W2PR82 267 aa21.2■□□□□ 0.99
USB1-207ENST00000563149 TRIM26Q12899 539 aaPredicted RBP21.05■□□□□ 0.96
USB1-207ENST00000563149 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
USB1-207ENST00000563149 CECR2Q9BXF3 1484 aa20.97■□□□□ 0.95
USB1-207ENST00000563149 MROH2BQ7Z745 1585 aa20.96■□□□□ 0.95
USB1-207ENST00000563149 WIZO95785 1651 aa20.84■□□□□ 0.93
USB1-207ENST00000563149 BAZ1AQ9NRL2 1556 aaPredicted RBP20.84■□□□□ 0.93
USB1-207ENST00000563149 PPARGC1BQ86YN6 1023 aaKnown RBP20.78■□□□□ 0.92
USB1-207ENST00000563149 ZEB1P37275 1124 aaPredicted RBP20.74■□□□□ 0.91
USB1-207ENST00000563149 EIF4G1Q04637 1599 aaKnown RBP20.7■□□□□ 0.9
USB1-207ENST00000563149 FAM9AQ8IZU1 332 aaPredicted RBP20.68■□□□□ 0.9
USB1-207ENST00000563149 TOP2AP11388 1531 aaKnown RBP20.64■□□□□ 0.89
USB1-207ENST00000563149 SMARCA4P51532 1647 aa20.59■□□□□ 0.89
USB1-207ENST00000563149 UNC13AQ9UPW8 1703 aa20.53■□□□□ 0.88
USB1-207ENST00000563149 SMARCA2P51531 1590 aa20.48■□□□□ 0.87
USB1-207ENST00000563149 CCDC88BA6NC98 1476 aa20.47■□□□□ 0.87
USB1-207ENST00000563149 EHMT2Q96KQ7 1210 aa20.35■□□□□ 0.85
USB1-207ENST00000563149 EEA1Q15075 1411 aa20.35■□□□□ 0.85
USB1-207ENST00000563149 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
USB1-207ENST00000563149 WRNQ14191 1432 aaPredicted RBP eCLIP20.32■□□□□ 0.84
USB1-207ENST00000563149 PEG3Q9GZU2 1588 aa20.3■□□□□ 0.84
USB1-207ENST00000563149 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.84
USB1-207ENST00000563149 TNIKQ9UKE5 1360 aa20.25■□□□□ 0.83
USB1-207ENST00000563149 CEP162Q5TB80 1403 aa20.19■□□□□ 0.82
USB1-207ENST00000563149 SOGA1O94964 1423 aa20.17■□□□□ 0.82
USB1-207ENST00000563149 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
USB1-207ENST00000563149 GOLGA3Q08378 1498 aa20.1■□□□□ 0.81
USB1-207ENST00000563149 PABPN1Q86U42 306 aaKnown RBP eCLIP20.06■□□□□ 0.8
USB1-207ENST00000563149 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
USB1-207ENST00000563149 RUSC2Q8N2Y8 1516 aa20.04■□□□□ 0.8
USB1-207ENST00000563149 ATAD2BQ9ULI0 1458 aa20.02■□□□□ 0.8
USB1-207ENST00000563149 KIF21BO75037 1637 aa20.01■□□□□ 0.79
USB1-207ENST00000563149 CEP164Q9UPV0 1460 aa20■□□□□ 0.79
USB1-207ENST00000563149 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20■□□□□ 0.79
USB1-207ENST00000563149 UBTFP17480 764 aaKnown RBP19.98■□□□□ 0.79
USB1-207ENST00000563149 SYNJ1O43426 1573 aa19.96■□□□□ 0.79
USB1-207ENST00000563149 BAZ1BQ9UIG0 1483 aaKnown RBP19.96■□□□□ 0.79
USB1-207ENST00000563149 TOP2BQ02880 1626 aa19.81■□□□□ 0.76
USB1-207ENST00000563149 CLIP1P30622 1438 aa19.81■□□□□ 0.76
USB1-207ENST00000563149 VPS8Q8N3P4 1428 aa19.78■□□□□ 0.76
USB1-207ENST00000563149 BIVM-ERCC5R4GMW8 1640 aa19.78■□□□□ 0.76
USB1-207ENST00000563149 TTBK1Q5TCY1 1321 aaPredicted RBP19.75■□□□□ 0.75
USB1-207ENST00000563149 HMGXB3Q12766 1538 aa19.72■□□□□ 0.75
USB1-207ENST00000563149 SCAF1Q9H7N4 1312 aaKnown RBP19.72■□□□□ 0.75
USB1-207ENST00000563149 DIEXFQ68CQ4 756 aaKnown RBP19.72■□□□□ 0.75
USB1-207ENST00000563149 RAPGEF2Q9Y4G8 1499 aa19.71■□□□□ 0.75
USB1-207ENST00000563149 ERICH3Q5RHP9 1530 aa19.69■□□□□ 0.74
USB1-207ENST00000563149 NCAPD3P42695 1498 aa19.69■□□□□ 0.74
USB1-207ENST00000563149 PELP1Q8IZL8 1130 aaKnown RBP19.69■□□□□ 0.74
USB1-207ENST00000563149 APLP2Q06481 763 aa19.65■□□□□ 0.74
USB1-207ENST00000563149 ACIN1Q9UKV3 1341 aaKnown RBP19.63■□□□□ 0.73
USB1-207ENST00000563149 PRXQ9BXM0 1461 aa19.62■□□□□ 0.73
USB1-207ENST00000563149 ZNF316A6NFI3 1004 aaPredicted RBP19.62■□□□□ 0.73
USB1-207ENST00000563149 CENPBP07199 599 aaPredicted RBP19.58■□□□□ 0.73
USB1-207ENST00000563149 CUX1P39880 1505 aa19.52■□□□□ 0.72
USB1-207ENST00000563149 HNRNPUL2Q1KMD3 747 aaKnown RBP19.52■□□□□ 0.72
USB1-207ENST00000563149 CFTRP13569 1480 aa19.52■□□□□ 0.72
USB1-207ENST00000563149 KIF27Q86VH2 1401 aa19.51■□□□□ 0.71
USB1-207ENST00000563149 NEUROD1Q13562 356 aa19.49■□□□□ 0.71
USB1-207ENST00000563149 ARAP1Q96P48 1450 aa19.48■□□□□ 0.71
USB1-207ENST00000563149 CLSPNQ9HAW4 1339 aa19.48■□□□□ 0.71
USB1-207ENST00000563149 PRDM2Q13029 1718 aa19.46■□□□□ 0.71
USB1-207ENST00000563149 RRBP1Q9P2E9 1410 aaKnown RBP19.36■□□□□ 0.69
USB1-207ENST00000563149 RANGAP1P46060 587 aaPredicted RBP19.36■□□□□ 0.69
USB1-207ENST00000563149 GTF3C3Q9Y5Q9 886 aa19.32■□□□□ 0.68
USB1-207ENST00000563149 ARHGAP35Q9NRY4 1499 aa19.31■□□□□ 0.68
USB1-207ENST00000563149 CUX2O14529 1486 aa19.3■□□□□ 0.68
USB1-207ENST00000563149 DHX57Q6P158 1386 aaKnown RBP19.3■□□□□ 0.68
USB1-207ENST00000563149 KANK4Q5T7N3 995 aaPredicted RBP19.28■□□□□ 0.68
USB1-207ENST00000563149 MAP3K1Q13233 1512 aa19.28■□□□□ 0.68
USB1-207ENST00000563149 CADPSQ9ULU8 1353 aa19.26■□□□□ 0.67
USB1-207ENST00000563149 IGF1RP08069 1367 aa19.24■□□□□ 0.67
USB1-207ENST00000563149 MIER1Q8N108 512 aa19.22■□□□□ 0.67
USB1-207ENST00000563149 CCNB3Q8WWL7 1395 aa19.22■□□□□ 0.67
USB1-207ENST00000563149 CARMIL1Q5VZK9 1371 aa19.18■□□□□ 0.66
USB1-207ENST00000563149 FGD5Q6ZNL6 1462 aa19.16■□□□□ 0.66
USB1-207ENST00000563149 TIAM1Q13009 1591 aa19.16■□□□□ 0.66
USB1-207ENST00000563149 FHAD1B1AJZ9 1412 aa19.11■□□□□ 0.65
USB1-207ENST00000563149 YTHDC1Q96MU7 727 aaKnown RBP19.08■□□□□ 0.64
USB1-207ENST00000563149 LRRC9Q6ZRR7 1453 aa19.07■□□□□ 0.64
USB1-207ENST00000563149 CFAP43Q8NDM7 1665 aa19.05■□□□□ 0.64
USB1-207ENST00000563149 FANCD2Q9BXW9 1451 aa19.05■□□□□ 0.64
USB1-207ENST00000563149 CC2D2AQ9P2K1 1620 aa19.04■□□□□ 0.64
USB1-207ENST00000563149 DNMBPQ6XZF7 1577 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms