RNA–Protein interactions for RNA: ENST00000562602.1

CFDP1-202, Transcript of craniofacial development protein 1, humanhuman

TSL 3

Gene CFDP1, Length 699 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFDP1-202ENST00000562602 AEBP2Q6ZN18 517 aaPredicted RBP23.32■■□□□ 1.32
CFDP1-202ENST00000562602 CHIC1Q5VXU3 224 aa22.14■■□□□ 1.13
CFDP1-202ENST00000562602 SENP3Q9H4L4 574 aaPredicted RBP19.71■□□□□ 0.75
CFDP1-202ENST00000562602 PHF23Q9BUL5 403 aaPredicted RBP19.55■□□□□ 0.72
CFDP1-202ENST00000562602 FOXD1Q16676 465 aa18.47■□□□□ 0.55
CFDP1-202ENST00000562602 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
CFDP1-202ENST00000562602 PPP6R1Q9UPN7 881 aa17.41■□□□□ 0.38
CFDP1-202ENST00000562602 ADRA2BP18089 450 aa17.3■□□□□ 0.36
CFDP1-202ENST00000562602 PIAS4Q8N2W9 510 aaPredicted RBP17.19■□□□□ 0.34
CFDP1-202ENST00000562602 MSH5O43196 834 aa17.13■□□□□ 0.33
CFDP1-202ENST00000562602 POTEDQ86YR6 584 aa16.66■□□□□ 0.26
CFDP1-202ENST00000562602 MAPK8IP2Q13387 824 aaPredicted RBP15.9■□□□□ 0.14
CFDP1-202ENST00000562602 DMRT2Q9Y5R5 561 aa15.7■□□□□ 0.1
CFDP1-202ENST00000562602 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
CFDP1-202ENST00000562602 PPP4R3CPQ6ZMV5 832 aa15.55■□□□□ 0.08
CFDP1-202ENST00000562602 NISCHQ9Y2I1 1504 aa15.4■□□□□ 0.06
CFDP1-202ENST00000562602 CNKSR2Q8WXI2 1034 aa15.2■□□□□ 0.02
CFDP1-202ENST00000562602 HOXD11P31277 338 aaPredicted RBP15.18■□□□□ 0.02
CFDP1-202ENST00000562602 RNF216Q9NWF9 866 aaPredicted RBP15.06■□□□□ 0
CFDP1-202ENST00000562602 DCAF8L1A6NGE4 600 aa14.95□□□□□ -0.02
CFDP1-202ENST00000562602 NCBP3Q53F19 620 aaKnown RBP14.87□□□□□ -0.03
CFDP1-202ENST00000562602 NPM3O75607 178 aaKnown RBP14.78□□□□□ -0.04
CFDP1-202ENST00000562602 RNF39Q9H2S5 420 aa14.7□□□□□ -0.06
CFDP1-202ENST00000562602 CACNB1Q02641 598 aaPredicted RBP14.65□□□□□ -0.06
CFDP1-202ENST00000562602 DNAJC5BQ9UF47 199 aa14.6□□□□□ -0.07
CFDP1-202ENST00000562602 KCNA4P22459 653 aa14.59□□□□□ -0.07
CFDP1-202ENST00000562602 C1QBPQ07021 282 aaKnown RBP14.44□□□□□ -0.1
CFDP1-202ENST00000562602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.37□□□□□ -0.111e-7■□□□□ 8.2
CFDP1-202ENST00000562602 U3KPZ7 1027 aaPredicted RBP14.17□□□□□ -0.14
CFDP1-202ENST00000562602 SLC4A2P04920 1241 aa14.15□□□□□ -0.14
CFDP1-202ENST00000562602 SPINK5Q9NQ38 1064 aaPredicted RBP13.95□□□□□ -0.18
CFDP1-202ENST00000562602 CAPN15O75808 1086 aa13.82□□□□□ -0.2
CFDP1-202ENST00000562602 DSG3P32926 999 aa13.81□□□□□ -0.2
CFDP1-202ENST00000562602 SLC4A1APQ9BWU0 796 aaKnown RBP13.72□□□□□ -0.21
CFDP1-202ENST00000562602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.65□□□□□ -0.22
CFDP1-202ENST00000562602 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
CFDP1-202ENST00000562602 TRHP20396 242 aaPredicted RBP13.64□□□□□ -0.23
CFDP1-202ENST00000562602 SAMD1Q6SPF0 538 aaPredicted RBP13.61□□□□□ -0.23
CFDP1-202ENST00000562602 MYCNP04198 464 aaPredicted RBP13.59□□□□□ -0.23
CFDP1-202ENST00000562602 APLP2Q06481 763 aa13.58□□□□□ -0.24
CFDP1-202ENST00000562602 ZNF219Q9P2Y4 722 aaPredicted RBP13.57□□□□□ -0.24
CFDP1-202ENST00000562602 ABCB7O75027 752 aa13.55□□□□□ -0.24
CFDP1-202ENST00000562602 FOXD4L1Q9NU39 408 aa13.51□□□□□ -0.25
CFDP1-202ENST00000562602 ZBTB22O15209 634 aa13.48□□□□□ -0.25
CFDP1-202ENST00000562602 ATF5Q9Y2D1 282 aaPredicted RBP13.42□□□□□ -0.26
CFDP1-202ENST00000562602 POLA2Q14181 598 aa13.33□□□□□ -0.28
CFDP1-202ENST00000562602 CCDC180Q9P1Z9 1646 aa13.17□□□□□ -0.3
CFDP1-202ENST00000562602 ATXN8OSP0DMR3 200 aa13.09□□□□□ -0.31
CFDP1-202ENST00000562602 POTEHQ6S545 545 aa13.04□□□□□ -0.32
CFDP1-202ENST00000562602 RBM42Q9BTD8 480 aaKnown RBP13.04□□□□□ -0.32
CFDP1-202ENST00000562602 ZCCHC6Q5VYS8 1495 aaKnown RBP13.03□□□□□ -0.32
CFDP1-202ENST00000562602 ZBTB12Q9Y330 459 aaPredicted RBP12.95□□□□□ -0.34
CFDP1-202ENST00000562602 CSRNP3Q8WYN3 585 aa12.91□□□□□ -0.34
CFDP1-202ENST00000562602 OSCARQ8IYS5 282 aa12.89□□□□□ -0.35
CFDP1-202ENST00000562602 AKT1S1Q96B36 256 aa12.82□□□□□ -0.36
CFDP1-202ENST00000562602 SHROOM4Q9ULL8 1493 aa12.82□□□□□ -0.36
CFDP1-202ENST00000562602 DCAF1Q9Y4B6 1507 aa12.82□□□□□ -0.36
CFDP1-202ENST00000562602 MKRN4PQ13434 485 aaPredicted RBP12.79□□□□□ -0.36
CFDP1-202ENST00000562602 CHRDL2Q6WN34 429 aa12.79□□□□□ -0.36
CFDP1-202ENST00000562602 REM2Q8IYK8 340 aaPredicted RBP12.75□□□□□ -0.37
CFDP1-202ENST00000562602 EHMT2Q96KQ7 1210 aa12.69□□□□□ -0.38
CFDP1-202ENST00000562602 FBLN2P98095 1184 aa12.68□□□□□ -0.38
CFDP1-202ENST00000562602 SUPT5HO00267 1087 aaKnown RBP12.67□□□□□ -0.38
CFDP1-202ENST00000562602 SPDYE2BA6NHP3 402 aa12.62□□□□□ -0.39
CFDP1-202ENST00000562602 SPDYE6P0CI01 402 aa12.62□□□□□ -0.39
CFDP1-202ENST00000562602 SPDYE2Q495Y8 402 aa12.62□□□□□ -0.39
CFDP1-202ENST00000562602 PITPNM1O00562 1244 aa12.61□□□□□ -0.39
CFDP1-202ENST00000562602 ABCC9O60706 1549 aa12.57□□□□□ -0.4
CFDP1-202ENST00000562602 DCAF8L2P0C7V8 631 aa12.55□□□□□ -0.4
CFDP1-202ENST00000562602 PIP4P2Q8N4L2 257 aa12.55□□□□□ -0.4
CFDP1-202ENST00000562602 SSUH2Q9Y2M2 353 aa12.53□□□□□ -0.4
CFDP1-202ENST00000562602 FXR2P51116 673 aaKnown RBP eCLIP12.51□□□□□ -0.41
CFDP1-202ENST00000562602 MYO15BQ96JP2 1530 aa12.5□□□□□ -0.41
CFDP1-202ENST00000562602 ZNF692Q9BU19 519 aaPredicted RBP12.49□□□□□ -0.41
CFDP1-202ENST00000562602 SPDYE1Q8NFV5 336 aaPredicted RBP12.36□□□□□ -0.43
CFDP1-202ENST00000562602 CLEC11AQ9Y240 323 aa12.35□□□□□ -0.43
CFDP1-202ENST00000562602 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
CFDP1-202ENST00000562602 PRKAR2AP13861 404 aaKnown RBP12.25□□□□□ -0.45
CFDP1-202ENST00000562602 EVX2Q03828 476 aa12.25□□□□□ -0.45
CFDP1-202ENST00000562602 SP7Q8TDD2 431 aaPredicted RBP12.25□□□□□ -0.45
CFDP1-202ENST00000562602 HAX1O00165 279 aa12.24□□□□□ -0.45
CFDP1-202ENST00000562602 NACADO15069 1562 aa12.22□□□□□ -0.45
CFDP1-202ENST00000562602 CHADLQ6NUI6 762 aa12.18□□□□□ -0.46
CFDP1-202ENST00000562602 PRR29P0C7W0 189 aa12.16□□□□□ -0.46
CFDP1-202ENST00000562602 RSF1Q96T23 1441 aaPredicted RBP12.14□□□□□ -0.47
CFDP1-202ENST00000562602 SPDYE4A6NLX3 237 aa12.12□□□□□ -0.47
CFDP1-202ENST00000562602 SCRIBQ14160 1630 aa12.11□□□□□ -0.47
CFDP1-202ENST00000562602 C19orf67A6NJJ6 358 aa12.09□□□□□ -0.47
CFDP1-202ENST00000562602 HRCP23327 699 aa12.09□□□□□ -0.47
CFDP1-202ENST00000562602 RB1CC1Q8TDY2 1594 aa12.07□□□□□ -0.48
CFDP1-202ENST00000562602 FARP1Q9Y4F1 1045 aaPredicted RBP11.98□□□□□ -0.49
CFDP1-202ENST00000562602 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
CFDP1-202ENST00000562602 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
CFDP1-202ENST00000562602 PCGF6Q9BYE7 350 aa11.95□□□□□ -0.5
CFDP1-202ENST00000562602 STAG3Q9UJ98 1225 aa11.94□□□□□ -0.5
CFDP1-202ENST00000562602 TRIM26Q12899 539 aaPredicted RBP11.93□□□□□ -0.5
CFDP1-202ENST00000562602 PROM2Q8N271 834 aa11.93□□□□□ -0.5
CFDP1-202ENST00000562602 LOC105371045A0A1W2PR82 267 aa11.9□□□□□ -0.5
CFDP1-202ENST00000562602 GABBR2O75899 941 aa11.89□□□□□ -0.51
CFDP1-202ENST00000562602 BAZ1AQ9NRL2 1556 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms