RNA–Protein interactions for RNA: ENST00000560099.5

PSMA4-218, Transcript of proteasome subunit alpha 4, humanhuman

TSL 2

Gene PSMA4, Length 2,596 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-218ENST00000560099 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
PSMA4-218ENST00000560099 SHROOM4Q9ULL8 1493 aa36.44■■■■□ 3.42
PSMA4-218ENST00000560099 CCDC180Q9P1Z9 1646 aa36.24■■■■□ 3.39
PSMA4-218ENST00000560099 ZCCHC6Q5VYS8 1495 aaKnown RBP36.12■■■■□ 3.37
PSMA4-218ENST00000560099 SUPT5HO00267 1087 aaKnown RBP35.75■■■■□ 3.31
PSMA4-218ENST00000560099 DCAF8L2P0C7V8 631 aa35.36■■■■□ 3.25
PSMA4-218ENST00000560099 DCAF1Q9Y4B6 1507 aa35■■■■□ 3.19
PSMA4-218ENST00000560099 CHIC1Q5VXU3 224 aa34.81■■■■□ 3.16
PSMA4-218ENST00000560099 MYO15BQ96JP2 1530 aa34.72■■■■□ 3.15
PSMA4-218ENST00000560099 ABCC9O60706 1549 aa34.08■■■■□ 3.05
PSMA4-218ENST00000560099 SCRIBQ14160 1630 aa34.01■■■■□ 3.03
PSMA4-218ENST00000560099 RSF1Q96T23 1441 aaPredicted RBP33.81■■■■□ 3
PSMA4-218ENST00000560099 LOC105371045A0A1W2PR82 267 aa33.8■■■■□ 3
PSMA4-218ENST00000560099 HRCP23327 699 aa33.79■■■■□ 3
PSMA4-218ENST00000560099 PCGF6Q9BYE7 350 aa33.76■■■□□ 2.99
PSMA4-218ENST00000560099 NACADO15069 1562 aa33.49■■■□□ 2.95
PSMA4-218ENST00000560099 RB1CC1Q8TDY2 1594 aa33.47■■■□□ 2.95
PSMA4-218ENST00000560099 CECR2Q9BXF3 1484 aa33.33■■■□□ 2.93
PSMA4-218ENST00000560099 TRIM41Q8WV44 630 aa33.27■■■□□ 2.92
PSMA4-218ENST00000560099 MROH2BQ7Z745 1585 aa33.21■■■□□ 2.91
PSMA4-218ENST00000560099 PPARGC1BQ86YN6 1023 aaKnown RBP33.13■■■□□ 2.89
PSMA4-218ENST00000560099 TRIM26Q12899 539 aaPredicted RBP33.09■■■□□ 2.89
PSMA4-218ENST00000560099 WIZO95785 1651 aa33.05■■■□□ 2.88
PSMA4-218ENST00000560099 FAM9AQ8IZU1 332 aaPredicted RBP33.03■■■□□ 2.88
PSMA4-218ENST00000560099 BAZ1AQ9NRL2 1556 aaPredicted RBP32.8■■■□□ 2.84
PSMA4-218ENST00000560099 EHMT2Q96KQ7 1210 aa32.75■■■□□ 2.83
PSMA4-218ENST00000560099 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
PSMA4-218ENST00000560099 UNC13AQ9UPW8 1703 aa32.55■■■□□ 2.8
PSMA4-218ENST00000560099 SMARCA4P51532 1647 aa32.5■■■□□ 2.79
PSMA4-218ENST00000560099 TOP2AP11388 1531 aaKnown RBP32.48■■■□□ 2.79
PSMA4-218ENST00000560099 CCDC88BA6NC98 1476 aa32.38■■■□□ 2.77
PSMA4-218ENST00000560099 SMARCA2P51531 1590 aa32.34■■■□□ 2.77
PSMA4-218ENST00000560099 ZEB1P37275 1124 aaPredicted RBP32.33■■■□□ 2.77
PSMA4-218ENST00000560099 ABCC8Q09428 1581 aa32.32■■■□□ 2.76
PSMA4-218ENST00000560099 PABPN1Q86U42 306 aaKnown RBP eCLIP32.12■■■□□ 2.73
PSMA4-218ENST00000560099 BICRAQ9NZM4 1560 aa32.11■■■□□ 2.73
PSMA4-218ENST00000560099 SOGA1O94964 1423 aa32.03■■■□□ 2.72
PSMA4-218ENST00000560099 RUSC2Q8N2Y8 1516 aa31.89■■■□□ 2.7
PSMA4-218ENST00000560099 CEP162Q5TB80 1403 aa31.88■■■□□ 2.69
PSMA4-218ENST00000560099 PEG3Q9GZU2 1588 aa31.87■■■□□ 2.69
PSMA4-218ENST00000560099 WRNQ14191 1432 aaPredicted RBP eCLIP31.85■■■□□ 2.69
PSMA4-218ENST00000560099 CSRNP3Q8WYN3 585 aa31.82■■■□□ 2.68
PSMA4-218ENST00000560099 TNIKQ9UKE5 1360 aa31.82■■■□□ 2.68
PSMA4-218ENST00000560099 EEA1Q15075 1411 aa31.8■■■□□ 2.68
PSMA4-218ENST00000560099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.79■■■□□ 2.68
PSMA4-218ENST00000560099 TTBK1Q5TCY1 1321 aaPredicted RBP31.7■■■□□ 2.67
PSMA4-218ENST00000560099 UBTFP17480 764 aaKnown RBP31.68■■■□□ 2.66
PSMA4-218ENST00000560099 CCER1Q8TC90 406 aaPredicted RBP31.66■■■□□ 2.66
PSMA4-218ENST00000560099 ATAD2BQ9ULI0 1458 aa31.66■■■□□ 2.66
PSMA4-218ENST00000560099 SYNJ1O43426 1573 aa31.61■■■□□ 2.65
PSMA4-218ENST00000560099 GOLGA3Q08378 1498 aa31.61■■■□□ 2.65
PSMA4-218ENST00000560099 BAZ1BQ9UIG0 1483 aaKnown RBP31.54■■■□□ 2.64
PSMA4-218ENST00000560099 CEP164Q9UPV0 1460 aa31.43■■■□□ 2.62
PSMA4-218ENST00000560099 KIF21BO75037 1637 aa31.41■■■□□ 2.62
PSMA4-218ENST00000560099 CLIP1P30622 1438 aa31.27■■■□□ 2.6
PSMA4-218ENST00000560099 RAPGEF2Q9Y4G8 1499 aa31.24■■■□□ 2.59
PSMA4-218ENST00000560099 TOP2BQ02880 1626 aa31.2■■■□□ 2.59
PSMA4-218ENST00000560099 SCAF1Q9H7N4 1312 aaKnown RBP31.17■■■□□ 2.58
PSMA4-218ENST00000560099 VPS8Q8N3P4 1428 aa31.14■■■□□ 2.58
PSMA4-218ENST00000560099 BIVM-ERCC5R4GMW8 1640 aa31.09■■■□□ 2.57
PSMA4-218ENST00000560099 DIEXFQ68CQ4 756 aaKnown RBP31.08■■■□□ 2.57
PSMA4-218ENST00000560099 RANGAP1P46060 587 aaPredicted RBP31.06■■■□□ 2.56
PSMA4-218ENST00000560099 HNRNPUL2Q1KMD3 747 aaKnown RBP31.04■■■□□ 2.56
PSMA4-218ENST00000560099 NCAPD3P42695 1498 aa31.01■■■□□ 2.56
PSMA4-218ENST00000560099 HMGXB3Q12766 1538 aa31■■■□□ 2.55
PSMA4-218ENST00000560099 APLP2Q06481 763 aa30.95■■■□□ 2.54
PSMA4-218ENST00000560099 PRXQ9BXM0 1461 aa30.92■■■□□ 2.54
PSMA4-218ENST00000560099 CUX1P39880 1505 aa30.9■■■□□ 2.54
PSMA4-218ENST00000560099 ERICH3Q5RHP9 1530 aa30.89■■■□□ 2.53
PSMA4-218ENST00000560099 ACIN1Q9UKV3 1341 aaKnown RBP30.85■■■□□ 2.53
PSMA4-218ENST00000560099 ZNF316A6NFI3 1004 aaPredicted RBP30.85■■■□□ 2.53
PSMA4-218ENST00000560099 NEUROD1Q13562 356 aa30.84■■■□□ 2.53
PSMA4-218ENST00000560099 CFTRP13569 1480 aa30.79■■■□□ 2.52
PSMA4-218ENST00000560099 ARAP1Q96P48 1450 aa30.79■■■□□ 2.52
PSMA4-218ENST00000560099 KIF27Q86VH2 1401 aa30.73■■■□□ 2.51
PSMA4-218ENST00000560099 KANK4Q5T7N3 995 aaPredicted RBP30.65■■■□□ 2.5
PSMA4-218ENST00000560099 CENPBP07199 599 aaPredicted RBP30.61■■■□□ 2.49
PSMA4-218ENST00000560099 PRDM2Q13029 1718 aa30.56■■■□□ 2.48
PSMA4-218ENST00000560099 ARHGAP35Q9NRY4 1499 aa30.52■■■□□ 2.48
PSMA4-218ENST00000560099 GTF3C3Q9Y5Q9 886 aa30.5■■■□□ 2.47
PSMA4-218ENST00000560099 DHX57Q6P158 1386 aaKnown RBP30.45■■■□□ 2.47
PSMA4-218ENST00000560099 CUX2O14529 1486 aa30.45■■■□□ 2.46
PSMA4-218ENST00000560099 MIER1Q8N108 512 aa30.44■■■□□ 2.46
PSMA4-218ENST00000560099 IGF1RP08069 1367 aa30.44■■■□□ 2.46
PSMA4-218ENST00000560099 RRBP1Q9P2E9 1410 aaKnown RBP30.43■■■□□ 2.46
PSMA4-218ENST00000560099 CADPSQ9ULU8 1353 aa30.43■■■□□ 2.46
PSMA4-218ENST00000560099 PELP1Q8IZL8 1130 aaKnown RBP30.42■■■□□ 2.46
PSMA4-218ENST00000560099 CLSPNQ9HAW4 1339 aa30.38■■■□□ 2.45
PSMA4-218ENST00000560099 YTHDC1Q96MU7 727 aaKnown RBP30.34■■■□□ 2.45
PSMA4-218ENST00000560099 FGD5Q6ZNL6 1462 aa30.33■■■□□ 2.45
PSMA4-218ENST00000560099 CCNB3Q8WWL7 1395 aa30.29■■■□□ 2.44
PSMA4-218ENST00000560099 CARMIL1Q5VZK9 1371 aa30.29■■■□□ 2.44
PSMA4-218ENST00000560099 CC2D2AQ9P2K1 1620 aa30.22■■■□□ 2.43
PSMA4-218ENST00000560099 ITGAEP38570 1179 aa30.18■■■□□ 2.42
PSMA4-218ENST00000560099 TIAM1Q13009 1591 aa30.17■■■□□ 2.42
PSMA4-218ENST00000560099 FANCD2Q9BXW9 1451 aa30.14■■■□□ 2.41
PSMA4-218ENST00000560099 MAP3K1Q13233 1512 aa30.13■■■□□ 2.41
PSMA4-218ENST00000560099 LRRC9Q6ZRR7 1453 aa30.06■■■□□ 2.4
PSMA4-218ENST00000560099 RAD54L2Q9Y4B4 1467 aa30.04■■■□□ 2.4
PSMA4-218ENST00000560099 RAB3GAP2Q9H2M9 1393 aa30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms