RNA–Protein interactions for RNA: ENST00000560029.5

CRNDE-208, Transcript of colorectal neoplasia differentially expressed, humanhuman

TSL 2

Gene CRNDE, Length 659 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNDE-208ENST00000560029 AEBP2Q6ZN18 517 aaPredicted RBP32.61■■■□□ 2.81
CRNDE-208ENST00000560029 CHIC1Q5VXU3 224 aa30.74■■■□□ 2.51
CRNDE-208ENST00000560029 SENP3Q9H4L4 574 aaPredicted RBP27.7■■■□□ 2.02
CRNDE-208ENST00000560029 PHF23Q9BUL5 403 aaPredicted RBP27.42■■□□□ 1.98
CRNDE-208ENST00000560029 FOXD1Q16676 465 aa25.94■■□□□ 1.74
CRNDE-208ENST00000560029 PLPPR3Q6T4P5 718 aa24.47■■□□□ 1.51
CRNDE-208ENST00000560029 PPP6R1Q9UPN7 881 aa24.22■■□□□ 1.47
CRNDE-208ENST00000560029 MSH5O43196 834 aa24.2■■□□□ 1.46
CRNDE-208ENST00000560029 PIAS4Q8N2W9 510 aaPredicted RBP24.2■■□□□ 1.46
CRNDE-208ENST00000560029 ADRA2BP18089 450 aa24.15■■□□□ 1.46
CRNDE-208ENST00000560029 POTEDQ86YR6 584 aa23.97■■□□□ 1.43
CRNDE-208ENST00000560029 MAPK8IP2Q13387 824 aaPredicted RBP22.25■■□□□ 1.15
CRNDE-208ENST00000560029 DMRT2Q9Y5R5 561 aa21.96■■□□□ 1.11
CRNDE-208ENST00000560029 SCAF1Q9H7N4 1312 aaKnown RBP21.91■■□□□ 1.1
CRNDE-208ENST00000560029 PPP4R3CPQ6ZMV5 832 aa21.5■■□□□ 1.03
CRNDE-208ENST00000560029 DCAF8L1A6NGE4 600 aa21.23■□□□□ 0.99
CRNDE-208ENST00000560029 HOXD11P31277 338 aaPredicted RBP21.08■□□□□ 0.97
CRNDE-208ENST00000560029 CNKSR2Q8WXI2 1034 aa21.06■□□□□ 0.96
CRNDE-208ENST00000560029 CACNB1Q02641 598 aaPredicted RBP20.97■□□□□ 0.95
CRNDE-208ENST00000560029 RNF216Q9NWF9 866 aaPredicted RBP20.89■□□□□ 0.93
CRNDE-208ENST00000560029 RNF39Q9H2S5 420 aa20.7■□□□□ 0.9
CRNDE-208ENST00000560029 NCBP3Q53F19 620 aaKnown RBP20.55■□□□□ 0.88
CRNDE-208ENST00000560029 NPM3O75607 178 aaKnown RBP20.34■□□□□ 0.85
CRNDE-208ENST00000560029 C1QBPQ07021 282 aaKnown RBP20.33■□□□□ 0.85
CRNDE-208ENST00000560029 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
CRNDE-208ENST00000560029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.18■□□□□ 0.82
CRNDE-208ENST00000560029 KCNA4P22459 653 aa19.88■□□□□ 0.77
CRNDE-208ENST00000560029 U3KPZ7 1027 aaPredicted RBP19.72■□□□□ 0.75
CRNDE-208ENST00000560029 SPINK5Q9NQ38 1064 aaPredicted RBP19.55■□□□□ 0.72
CRNDE-208ENST00000560029 CAPN15O75808 1086 aa19.5■□□□□ 0.71
CRNDE-208ENST00000560029 SLC4A2P04920 1241 aa19.48■□□□□ 0.71
CRNDE-208ENST00000560029 DSG3P32926 999 aa19.36■□□□□ 0.69
CRNDE-208ENST00000560029 TRHP20396 242 aaPredicted RBP19.18■□□□□ 0.66
CRNDE-208ENST00000560029 ABCB7O75027 752 aa19.09■□□□□ 0.65
CRNDE-208ENST00000560029 APLP2Q06481 763 aa19■□□□□ 0.63
CRNDE-208ENST00000560029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.99■□□□□ 0.63
CRNDE-208ENST00000560029 HNRNPUL2Q1KMD3 747 aaKnown RBP18.99■□□□□ 0.63
CRNDE-208ENST00000560029 ZNF219Q9P2Y4 722 aaPredicted RBP18.99■□□□□ 0.63
CRNDE-208ENST00000560029 SAMD1Q6SPF0 538 aaPredicted RBP18.91■□□□□ 0.62
CRNDE-208ENST00000560029 POTEHQ6S545 545 aa18.75■□□□□ 0.59
CRNDE-208ENST00000560029 MYCNP04198 464 aaPredicted RBP18.74■□□□□ 0.59
CRNDE-208ENST00000560029 SLC4A1APQ9BWU0 796 aaKnown RBP18.7■□□□□ 0.58
CRNDE-208ENST00000560029 POLA2Q14181 598 aa18.61■□□□□ 0.57
CRNDE-208ENST00000560029 FOXD4L1Q9NU39 408 aa18.5■□□□□ 0.55
CRNDE-208ENST00000560029 ATF5Q9Y2D1 282 aaPredicted RBP18.48■□□□□ 0.55
CRNDE-208ENST00000560029 RBM42Q9BTD8 480 aaKnown RBP18.38■□□□□ 0.53
CRNDE-208ENST00000560029 ZBTB22O15209 634 aa18.3■□□□□ 0.52
CRNDE-208ENST00000560029 CHRDL2Q6WN34 429 aa18.13■□□□□ 0.49
CRNDE-208ENST00000560029 ZBTB12Q9Y330 459 aaPredicted RBP18.05■□□□□ 0.48
CRNDE-208ENST00000560029 OSCARQ8IYS5 282 aa18.02■□□□□ 0.48
CRNDE-208ENST00000560029 AKT1S1Q96B36 256 aa17.96■□□□□ 0.47
CRNDE-208ENST00000560029 REM2Q8IYK8 340 aaPredicted RBP17.87■□□□□ 0.45
CRNDE-208ENST00000560029 ATXN8OSP0DMR3 200 aa17.86■□□□□ 0.45
CRNDE-208ENST00000560029 PITPNM1O00562 1244 aa17.7■□□□□ 0.42
CRNDE-208ENST00000560029 PIP4P2Q8N4L2 257 aa17.7■□□□□ 0.42
CRNDE-208ENST00000560029 FBLN2P98095 1184 aa17.63■□□□□ 0.41
CRNDE-208ENST00000560029 MKRN4PQ13434 485 aaPredicted RBP17.57■□□□□ 0.4
CRNDE-208ENST00000560029 SPDYE2BA6NHP3 402 aa17.53■□□□□ 0.4
CRNDE-208ENST00000560029 SPDYE6P0CI01 402 aa17.53■□□□□ 0.4
CRNDE-208ENST00000560029 SPDYE2Q495Y8 402 aa17.53■□□□□ 0.4
CRNDE-208ENST00000560029 FXR2P51116 673 aaKnown RBP eCLIP17.51■□□□□ 0.39
CRNDE-208ENST00000560029 SP7Q8TDD2 431 aaPredicted RBP17.49■□□□□ 0.39
CRNDE-208ENST00000560029 HAX1O00165 279 aa17.44■□□□□ 0.38
CRNDE-208ENST00000560029 ZNF692Q9BU19 519 aaPredicted RBP17.39■□□□□ 0.37
CRNDE-208ENST00000560029 CLEC11AQ9Y240 323 aa17.38■□□□□ 0.37
CRNDE-208ENST00000560029 CSRNP3Q8WYN3 585 aa17.31■□□□□ 0.36
CRNDE-208ENST00000560029 SSUH2Q9Y2M2 353 aa17.3■□□□□ 0.36
CRNDE-208ENST00000560029 EVX2Q03828 476 aa17.27■□□□□ 0.36
CRNDE-208ENST00000560029 SPDYE1Q8NFV5 336 aaPredicted RBP17.27■□□□□ 0.36
CRNDE-208ENST00000560029 PRKAR2AP13861 404 aaKnown RBP17.24■□□□□ 0.35
CRNDE-208ENST00000560029 PABPN1Q86U42 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
CRNDE-208ENST00000560029 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
CRNDE-208ENST00000560029 CHADLQ6NUI6 762 aa17.09■□□□□ 0.33
CRNDE-208ENST00000560029 PRR29P0C7W0 189 aa17.02■□□□□ 0.32
CRNDE-208ENST00000560029 C19orf67A6NJJ6 358 aa16.96■□□□□ 0.31
CRNDE-208ENST00000560029 GABBR2O75899 941 aa16.8■□□□□ 0.28
CRNDE-208ENST00000560029 FARP1Q9Y4F1 1045 aaPredicted RBP16.73■□□□□ 0.27
CRNDE-208ENST00000560029 CD44P16070 742 aaKnown RBP16.67■□□□□ 0.26
CRNDE-208ENST00000560029 SPDYE4A6NLX3 237 aa16.65■□□□□ 0.26
CRNDE-208ENST00000560029 CREBZFQ9NS37 354 aa16.57■□□□□ 0.24
CRNDE-208ENST00000560029 STAG3Q9UJ98 1225 aa16.52■□□□□ 0.24
CRNDE-208ENST00000560029 POTEIP0CG38 1075 aa16.46■□□□□ 0.23
CRNDE-208ENST00000560029 ZRANB1Q9UGI0 708 aa16.44■□□□□ 0.22
CRNDE-208ENST00000560029 LHX8Q68G74 356 aa16.43■□□□□ 0.22
CRNDE-208ENST00000560029 ZNF579Q8NAF0 562 aaKnown RBP16.34■□□□□ 0.21
CRNDE-208ENST00000560029 DCBLD2Q96PD2 775 aa16.3■□□□□ 0.2
CRNDE-208ENST00000560029 CLCN6P51797 869 aa16.27■□□□□ 0.2
CRNDE-208ENST00000560029 GALR2O43603 387 aaPredicted RBP16.26■□□□□ 0.19
CRNDE-208ENST00000560029 MNX1P50219 401 aaPredicted RBP16.25■□□□□ 0.19
CRNDE-208ENST00000560029 PHF12Q96QT6 1004 aa16.24■□□□□ 0.19
CRNDE-208ENST00000560029 PAK3O75914 559 aaPredicted RBP16.19■□□□□ 0.18
CRNDE-208ENST00000560029 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
CRNDE-208ENST00000560029 PROM2Q8N271 834 aa16.13■□□□□ 0.17
CRNDE-208ENST00000560029 TSPYL2Q9H2G4 693 aaPredicted RBP16.03■□□□□ 0.16
CRNDE-208ENST00000560029 PELP1Q8IZL8 1130 aaKnown RBP15.98■□□□□ 0.15
CRNDE-208ENST00000560029 MS4A3Q96HJ5 214 aa15.98■□□□□ 0.15
CRNDE-208ENST00000560029 POTEB2H3BUK9 544 aa15.95■□□□□ 0.14
CRNDE-208ENST00000560029 MIER1Q8N108 512 aa15.94■□□□□ 0.14
CRNDE-208ENST00000560029 OTUD5Q96G74 571 aa15.87■□□□□ 0.13
CRNDE-208ENST00000560029 CCDC61Q9Y6R9 512 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms