RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 NISCHQ9Y2I1 1504 aa34.3■■■■□ 3.08
SPG11-215ENST00000559193 SHROOM4Q9ULL8 1493 aa29.23■■■□□ 2.27
SPG11-215ENST00000559193 CCDC180Q9P1Z9 1646 aa29.15■■■□□ 2.26
SPG11-215ENST00000559193 ZCCHC6Q5VYS8 1495 aaKnown RBP29.07■■■□□ 2.24
SPG11-215ENST00000559193 SUPT5HO00267 1087 aaKnown RBP28.69■■■□□ 2.18
SPG11-215ENST00000559193 DCAF8L2P0C7V8 631 aa28.22■■■□□ 2.11
SPG11-215ENST00000559193 DCAF1Q9Y4B6 1507 aa28.18■■■□□ 2.1
SPG11-215ENST00000559193 CHIC1Q5VXU3 224 aa28.02■■■□□ 2.08
SPG11-215ENST00000559193 MYO15BQ96JP2 1530 aa28■■■□□ 2.07
SPG11-215ENST00000559193 ABCC9O60706 1549 aa27.47■■□□□ 1.99
SPG11-215ENST00000559193 HRCP23327 699 aa27.35■■□□□ 1.97
SPG11-215ENST00000559193 SCRIBQ14160 1630 aa27.29■■□□□ 1.96
SPG11-215ENST00000559193 PCGF6Q9BYE7 350 aa27.21■■□□□ 1.95
SPG11-215ENST00000559193 RSF1Q96T23 1441 aaPredicted RBP27.18■■□□□ 1.94
SPG11-215ENST00000559193 LOC105371045A0A1W2PR82 267 aa27.15■■□□□ 1.94
SPG11-215ENST00000559193 RB1CC1Q8TDY2 1594 aa26.94■■□□□ 1.9
SPG11-215ENST00000559193 NACADO15069 1562 aa26.89■■□□□ 1.89
SPG11-215ENST00000559193 CECR2Q9BXF3 1484 aa26.73■■□□□ 1.87
SPG11-215ENST00000559193 PPARGC1BQ86YN6 1023 aaKnown RBP26.73■■□□□ 1.87
SPG11-215ENST00000559193 TRIM41Q8WV44 630 aa26.73■■□□□ 1.87
SPG11-215ENST00000559193 TRIM26Q12899 539 aaPredicted RBP26.7■■□□□ 1.86
SPG11-215ENST00000559193 MROH2BQ7Z745 1585 aa26.67■■□□□ 1.86
SPG11-215ENST00000559193 WIZO95785 1651 aa26.53■■□□□ 1.84
SPG11-215ENST00000559193 FAM9AQ8IZU1 332 aaPredicted RBP26.49■■□□□ 1.83
SPG11-215ENST00000559193 BAZ1AQ9NRL2 1556 aaPredicted RBP26.41■■□□□ 1.82
SPG11-215ENST00000559193 EIF4G1Q04637 1599 aaKnown RBP26.31■■□□□ 1.8
SPG11-215ENST00000559193 EHMT2Q96KQ7 1210 aa26.23■■□□□ 1.79
SPG11-215ENST00000559193 ZEB1P37275 1124 aaPredicted RBP26.15■■□□□ 1.78
SPG11-215ENST00000559193 TOP2AP11388 1531 aaKnown RBP26.14■■□□□ 1.78
SPG11-215ENST00000559193 SMARCA4P51532 1647 aa26.11■■□□□ 1.77
SPG11-215ENST00000559193 UNC13AQ9UPW8 1703 aa26.05■■□□□ 1.76
SPG11-215ENST00000559193 CCDC88BA6NC98 1476 aa26.01■■□□□ 1.75
SPG11-215ENST00000559193 SMARCA2P51531 1590 aa26■■□□□ 1.75
SPG11-215ENST00000559193 ABCC8Q09428 1581 aa25.97■■□□□ 1.75
SPG11-215ENST00000559193 SOGA1O94964 1423 aa25.74■■□□□ 1.71
SPG11-215ENST00000559193 BICRAQ9NZM4 1560 aa25.73■■□□□ 1.71
SPG11-215ENST00000559193 WRNQ14191 1432 aaPredicted RBP eCLIP25.72■■□□□ 1.71
SPG11-215ENST00000559193 CEP162Q5TB80 1403 aa25.69■■□□□ 1.7
SPG11-215ENST00000559193 EEA1Q15075 1411 aa25.65■■□□□ 1.7
SPG11-215ENST00000559193 TNIKQ9UKE5 1360 aa25.63■■□□□ 1.69
SPG11-215ENST00000559193 PEG3Q9GZU2 1588 aa25.63■■□□□ 1.69
SPG11-215ENST00000559193 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
SPG11-215ENST00000559193 RUSC2Q8N2Y8 1516 aa25.61■■□□□ 1.69
SPG11-215ENST00000559193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.59■■□□□ 1.69
SPG11-215ENST00000559193 CSRNP3Q8WYN3 585 aa25.56■■□□□ 1.68
SPG11-215ENST00000559193 CCER1Q8TC90 406 aaPredicted RBP25.51■■□□□ 1.68
SPG11-215ENST00000559193 GOLGA3Q08378 1498 aa25.48■■□□□ 1.67
SPG11-215ENST00000559193 TTBK1Q5TCY1 1321 aaPredicted RBP25.44■■□□□ 1.66
SPG11-215ENST00000559193 UBTFP17480 764 aaKnown RBP25.43■■□□□ 1.66
SPG11-215ENST00000559193 SYNJ1O43426 1573 aa25.42■■□□□ 1.66
SPG11-215ENST00000559193 ATAD2BQ9ULI0 1458 aa25.39■■□□□ 1.66
SPG11-215ENST00000559193 KIF21BO75037 1637 aa25.33■■□□□ 1.64
SPG11-215ENST00000559193 CEP164Q9UPV0 1460 aa25.32■■□□□ 1.64
SPG11-215ENST00000559193 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
SPG11-215ENST00000559193 SCAF1Q9H7N4 1312 aaKnown RBP25.26■■□□□ 1.63
SPG11-215ENST00000559193 CLIP1P30622 1438 aa25.17■■□□□ 1.62
SPG11-215ENST00000559193 RAPGEF2Q9Y4G8 1499 aa25.12■■□□□ 1.61
SPG11-215ENST00000559193 TOP2BQ02880 1626 aa25.1■■□□□ 1.61
SPG11-215ENST00000559193 VPS8Q8N3P4 1428 aa25.1■■□□□ 1.61
SPG11-215ENST00000559193 DIEXFQ68CQ4 756 aaKnown RBP25.09■■□□□ 1.61
SPG11-215ENST00000559193 BIVM-ERCC5R4GMW8 1640 aa25.02■■□□□ 1.6
SPG11-215ENST00000559193 ACIN1Q9UKV3 1341 aaKnown RBP24.98■■□□□ 1.59
SPG11-215ENST00000559193 HNRNPUL2Q1KMD3 747 aaKnown RBP24.94■■□□□ 1.58
SPG11-215ENST00000559193 NEUROD1Q13562 356 aa24.94■■□□□ 1.58
SPG11-215ENST00000559193 HMGXB3Q12766 1538 aa24.91■■□□□ 1.58
SPG11-215ENST00000559193 ERICH3Q5RHP9 1530 aa24.9■■□□□ 1.58
SPG11-215ENST00000559193 ZNF316A6NFI3 1004 aaPredicted RBP24.9■■□□□ 1.58
SPG11-215ENST00000559193 PRXQ9BXM0 1461 aa24.88■■□□□ 1.57
SPG11-215ENST00000559193 NCAPD3P42695 1498 aa24.88■■□□□ 1.57
SPG11-215ENST00000559193 APLP2Q06481 763 aa24.87■■□□□ 1.57
SPG11-215ENST00000559193 RANGAP1P46060 587 aaPredicted RBP24.86■■□□□ 1.57
SPG11-215ENST00000559193 CUX1P39880 1505 aa24.83■■□□□ 1.57
SPG11-215ENST00000559193 PELP1Q8IZL8 1130 aaKnown RBP24.81■■□□□ 1.56
SPG11-215ENST00000559193 ARAP1Q96P48 1450 aa24.79■■□□□ 1.56
SPG11-215ENST00000559193 CENPBP07199 599 aaPredicted RBP24.79■■□□□ 1.56
SPG11-215ENST00000559193 CFTRP13569 1480 aa24.72■■□□□ 1.55
SPG11-215ENST00000559193 KIF27Q86VH2 1401 aa24.7■■□□□ 1.55
SPG11-215ENST00000559193 GTF3C3Q9Y5Q9 886 aa24.67■■□□□ 1.54
SPG11-215ENST00000559193 KANK4Q5T7N3 995 aaPredicted RBP24.61■■□□□ 1.53
SPG11-215ENST00000559193 DHX57Q6P158 1386 aaKnown RBP24.56■■□□□ 1.52
SPG11-215ENST00000559193 PRDM2Q13029 1718 aa24.55■■□□□ 1.52
SPG11-215ENST00000559193 ARHGAP35Q9NRY4 1499 aa24.55■■□□□ 1.52
SPG11-215ENST00000559193 MIER1Q8N108 512 aa24.55■■□□□ 1.52
SPG11-215ENST00000559193 RRBP1Q9P2E9 1410 aaKnown RBP24.54■■□□□ 1.52
SPG11-215ENST00000559193 CLSPNQ9HAW4 1339 aa24.53■■□□□ 1.52
SPG11-215ENST00000559193 YTHDC1Q96MU7 727 aaKnown RBP24.47■■□□□ 1.51
SPG11-215ENST00000559193 CUX2O14529 1486 aa24.45■■□□□ 1.5
SPG11-215ENST00000559193 IGF1RP08069 1367 aa24.43■■□□□ 1.5
SPG11-215ENST00000559193 CCNB3Q8WWL7 1395 aa24.4■■□□□ 1.5
SPG11-215ENST00000559193 CADPSQ9ULU8 1353 aa24.38■■□□□ 1.49
SPG11-215ENST00000559193 FGD5Q6ZNL6 1462 aa24.35■■□□□ 1.49
SPG11-215ENST00000559193 TIAM1Q13009 1591 aa24.31■■□□□ 1.48
SPG11-215ENST00000559193 CARMIL1Q5VZK9 1371 aa24.31■■□□□ 1.48
SPG11-215ENST00000559193 MAP3K1Q13233 1512 aa24.3■■□□□ 1.48
SPG11-215ENST00000559193 ITGAEP38570 1179 aa24.21■■□□□ 1.47
SPG11-215ENST00000559193 LRRC9Q6ZRR7 1453 aa24.21■■□□□ 1.47
SPG11-215ENST00000559193 RAB3GAP2Q9H2M9 1393 aa24.19■■□□□ 1.46
SPG11-215ENST00000559193 CC2D2AQ9P2K1 1620 aa24.18■■□□□ 1.46
SPG11-215ENST00000559193 FANCD2Q9BXW9 1451 aa24.17■■□□□ 1.46
SPG11-215ENST00000559193 MAPKBP1O60336 1514 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms