RNA–Protein interactions for RNA: ENST00000558847.1

CASC4-206, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-206ENST00000558847 AEBP2Q6ZN18 517 aaPredicted RBP24.4■■□□□ 1.5
CASC4-206ENST00000558847 CHIC1Q5VXU3 224 aa23.25■■□□□ 1.31
CASC4-206ENST00000558847 SENP3Q9H4L4 574 aaPredicted RBP20.86■□□□□ 0.93
CASC4-206ENST00000558847 PHF23Q9BUL5 403 aaPredicted RBP20.6■□□□□ 0.89
CASC4-206ENST00000558847 FOXD1Q16676 465 aa19.41■□□□□ 0.7
CASC4-206ENST00000558847 PLPPR3Q6T4P5 718 aa18.66■□□□□ 0.58
CASC4-206ENST00000558847 PIAS4Q8N2W9 510 aaPredicted RBP18.22■□□□□ 0.51
CASC4-206ENST00000558847 MSH5O43196 834 aa18.18■□□□□ 0.5
CASC4-206ENST00000558847 ADRA2BP18089 450 aa18.18■□□□□ 0.5
CASC4-206ENST00000558847 PPP6R1Q9UPN7 881 aa18.18■□□□□ 0.5
CASC4-206ENST00000558847 POTEDQ86YR6 584 aa17.61■□□□□ 0.41
CASC4-206ENST00000558847 SCAF1Q9H7N4 1312 aaKnown RBP16.68■□□□□ 0.26
CASC4-206ENST00000558847 MAPK8IP2Q13387 824 aaPredicted RBP16.67■□□□□ 0.26
CASC4-206ENST00000558847 DMRT2Q9Y5R5 561 aa16.52■□□□□ 0.24
CASC4-206ENST00000558847 PPP4R3CPQ6ZMV5 832 aa16.36■□□□□ 0.21
CASC4-206ENST00000558847 CNKSR2Q8WXI2 1034 aa16.03■□□□□ 0.16
CASC4-206ENST00000558847 DCAF8L1A6NGE4 600 aa16.01■□□□□ 0.15
CASC4-206ENST00000558847 HOXD11P31277 338 aaPredicted RBP15.91■□□□□ 0.14
CASC4-206ENST00000558847 RNF216Q9NWF9 866 aaPredicted RBP15.85■□□□□ 0.13
CASC4-206ENST00000558847 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
CASC4-206ENST00000558847 CACNB1Q02641 598 aaPredicted RBP15.62■□□□□ 0.09
CASC4-206ENST00000558847 NPM3O75607 178 aaKnown RBP15.5■□□□□ 0.07
CASC4-206ENST00000558847 RNF39Q9H2S5 420 aa15.47■□□□□ 0.07
CASC4-206ENST00000558847 DNAJC5BQ9UF47 199 aa15.31■□□□□ 0.04
CASC4-206ENST00000558847 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.3■□□□□ 0.04
CASC4-206ENST00000558847 C1QBPQ07021 282 aaKnown RBP15.28■□□□□ 0.04
CASC4-206ENST00000558847 KCNA4P22459 653 aa15.27■□□□□ 0.04
CASC4-206ENST00000558847 U3KPZ7 1027 aaPredicted RBP14.89□□□□□ -0.03
CASC4-206ENST00000558847 SLC4A2P04920 1241 aa14.75□□□□□ -0.05
CASC4-206ENST00000558847 CAPN15O75808 1086 aa14.73□□□□□ -0.05
CASC4-206ENST00000558847 SPINK5Q9NQ38 1064 aaPredicted RBP14.68□□□□□ -0.06
CASC4-206ENST00000558847 APLP2Q06481 763 aa14.57□□□□□ -0.08
CASC4-206ENST00000558847 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.55□□□□□ -0.08
CASC4-206ENST00000558847 HNRNPUL2Q1KMD3 747 aaKnown RBP14.55□□□□□ -0.08
CASC4-206ENST00000558847 DSG3P32926 999 aa14.53□□□□□ -0.08
CASC4-206ENST00000558847 TRHP20396 242 aaPredicted RBP14.51□□□□□ -0.09
CASC4-206ENST00000558847 SLC4A1APQ9BWU0 796 aaKnown RBP14.47□□□□□ -0.09
CASC4-206ENST00000558847 SAMD1Q6SPF0 538 aaPredicted RBP14.46□□□□□ -0.09
CASC4-206ENST00000558847 ZNF219Q9P2Y4 722 aaPredicted RBP14.44□□□□□ -0.1
CASC4-206ENST00000558847 ABCB7O75027 752 aa14.38□□□□□ -0.11
CASC4-206ENST00000558847 MYCNP04198 464 aaPredicted RBP14.36□□□□□ -0.11
CASC4-206ENST00000558847 FOXD4L1Q9NU39 408 aa14.25□□□□□ -0.13
CASC4-206ENST00000558847 POLA2Q14181 598 aa14.09□□□□□ -0.15
CASC4-206ENST00000558847 ZBTB22O15209 634 aa13.99□□□□□ -0.17
CASC4-206ENST00000558847 ATF5Q9Y2D1 282 aaPredicted RBP13.99□□□□□ -0.17
CASC4-206ENST00000558847 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
CASC4-206ENST00000558847 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
CASC4-206ENST00000558847 POTEHQ6S545 545 aa13.84□□□□□ -0.19
CASC4-206ENST00000558847 ZBTB12Q9Y330 459 aaPredicted RBP13.81□□□□□ -0.2
CASC4-206ENST00000558847 ATXN8OSP0DMR3 200 aa13.77□□□□□ -0.21
CASC4-206ENST00000558847 CSRNP3Q8WYN3 585 aa13.76□□□□□ -0.21
CASC4-206ENST00000558847 OSCARQ8IYS5 282 aa13.63□□□□□ -0.23
CASC4-206ENST00000558847 AKT1S1Q96B36 256 aa13.58□□□□□ -0.24
CASC4-206ENST00000558847 CHRDL2Q6WN34 429 aa13.56□□□□□ -0.24
CASC4-206ENST00000558847 FBLN2P98095 1184 aa13.54□□□□□ -0.24
CASC4-206ENST00000558847 REM2Q8IYK8 340 aaPredicted RBP13.45□□□□□ -0.26
CASC4-206ENST00000558847 SPDYE2BA6NHP3 402 aa13.37□□□□□ -0.27
CASC4-206ENST00000558847 SPDYE6P0CI01 402 aa13.37□□□□□ -0.27
CASC4-206ENST00000558847 SPDYE2Q495Y8 402 aa13.37□□□□□ -0.27
CASC4-206ENST00000558847 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
CASC4-206ENST00000558847 PITPNM1O00562 1244 aa13.31□□□□□ -0.28
CASC4-206ENST00000558847 ZNF692Q9BU19 519 aaPredicted RBP13.27□□□□□ -0.29
CASC4-206ENST00000558847 PIP4P2Q8N4L2 257 aa13.24□□□□□ -0.29
CASC4-206ENST00000558847 CLEC11AQ9Y240 323 aa13.19□□□□□ -0.3
CASC4-206ENST00000558847 FXR2P51116 673 aaKnown RBP eCLIP13.14□□□□□ -0.31
CASC4-206ENST00000558847 SPDYE1Q8NFV5 336 aaPredicted RBP13.14□□□□□ -0.31
CASC4-206ENST00000558847 SSUH2Q9Y2M2 353 aa13.14□□□□□ -0.31
CASC4-206ENST00000558847 HAX1O00165 279 aa13.07□□□□□ -0.32
CASC4-206ENST00000558847 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
CASC4-206ENST00000558847 PRKAR2AP13861 404 aaKnown RBP13.01□□□□□ -0.33
CASC4-206ENST00000558847 SP7Q8TDD2 431 aaPredicted RBP13□□□□□ -0.33
CASC4-206ENST00000558847 PRR29P0C7W0 189 aa12.94□□□□□ -0.34
CASC4-206ENST00000558847 CHADLQ6NUI6 762 aa12.88□□□□□ -0.35
CASC4-206ENST00000558847 SPDYE4A6NLX3 237 aa12.81□□□□□ -0.36
CASC4-206ENST00000558847 EVX2Q03828 476 aa12.8□□□□□ -0.36
CASC4-206ENST00000558847 C19orf67A6NJJ6 358 aa12.73□□□□□ -0.37
CASC4-206ENST00000558847 STAG3Q9UJ98 1225 aa12.72□□□□□ -0.37
CASC4-206ENST00000558847 FARP1Q9Y4F1 1045 aaPredicted RBP12.66□□□□□ -0.38
CASC4-206ENST00000558847 CD44P16070 742 aaKnown RBP12.6□□□□□ -0.39
CASC4-206ENST00000558847 CREBZFQ9NS37 354 aa12.56□□□□□ -0.4
CASC4-206ENST00000558847 GABBR2O75899 941 aa12.55□□□□□ -0.4
CASC4-206ENST00000558847 ZRANB1Q9UGI0 708 aa12.45□□□□□ -0.42
CASC4-206ENST00000558847 NPM1P06748 294 aaKnown RBP eCLIP12.41□□□□□ -0.42
CASC4-206ENST00000558847 PAK3O75914 559 aaPredicted RBP12.4□□□□□ -0.42
CASC4-206ENST00000558847 FKBP8Q14318 412 aa12.4□□□□□ -0.42
CASC4-206ENST00000558847 PROM2Q8N271 834 aa12.39□□□□□ -0.43
CASC4-206ENST00000558847 CLCN6P51797 869 aa12.37□□□□□ -0.43
CASC4-206ENST00000558847 ZNF579Q8NAF0 562 aaKnown RBP12.35□□□□□ -0.43
CASC4-206ENST00000558847 DCBLD2Q96PD2 775 aa12.31□□□□□ -0.44
CASC4-206ENST00000558847 MNX1P50219 401 aaPredicted RBP12.3□□□□□ -0.44
CASC4-206ENST00000558847 PLEKHG5O94827 1062 aa12.29□□□□□ -0.44
CASC4-206ENST00000558847 MIER1Q8N108 512 aa12.27□□□□□ -0.45
CASC4-206ENST00000558847 PHF12Q96QT6 1004 aa12.25□□□□□ -0.45
CASC4-206ENST00000558847 POTEIP0CG38 1075 aa12.23□□□□□ -0.45
CASC4-206ENST00000558847 GALR2O43603 387 aaPredicted RBP12.22□□□□□ -0.45
CASC4-206ENST00000558847 LHX8Q68G74 356 aa12.21□□□□□ -0.45
CASC4-206ENST00000558847 TSPYL2Q9H2G4 693 aaPredicted RBP12.2□□□□□ -0.46
CASC4-206ENST00000558847 PLCD3Q8N3E9 789 aa12.19□□□□□ -0.46
CASC4-206ENST00000558847 MS4A3Q96HJ5 214 aa12.07□□□□□ -0.48
CASC4-206ENST00000558847 ZBTB47Q9UFB7 747 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms