RNA–Protein interactions for RNA: ENST00000555746.5

SRP54-209, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 558 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-209ENST00000555746 AEBP2Q6ZN18 517 aaPredicted RBP16.23■□□□□ 0.19
SRP54-209ENST00000555746 CHIC1Q5VXU3 224 aa16.07■□□□□ 0.16
SRP54-209ENST00000555746 PHF23Q9BUL5 403 aaPredicted RBP14.15□□□□□ -0.14
SRP54-209ENST00000555746 SENP3Q9H4L4 574 aaPredicted RBP13.74□□□□□ -0.21
SRP54-209ENST00000555746 PLPPR3Q6T4P5 718 aa13.14□□□□□ -0.31
SRP54-209ENST00000555746 FOXD1Q16676 465 aa12.71□□□□□ -0.37
SRP54-209ENST00000555746 PPP6R1Q9UPN7 881 aa12.39□□□□□ -0.43
SRP54-209ENST00000555746 ADRA2BP18089 450 aa12.37□□□□□ -0.43
SRP54-209ENST00000555746 PIAS4Q8N2W9 510 aaPredicted RBP12.02□□□□□ -0.49
SRP54-209ENST00000555746 MSH5O43196 834 aa11.66□□□□□ -0.54
SRP54-209ENST00000555746 PPP4R3CPQ6ZMV5 832 aa11.58□□□□□ -0.56
SRP54-209ENST00000555746 KCNA4P22459 653 aa11.54□□□□□ -0.56
SRP54-209ENST00000555746 POTEDQ86YR6 584 aa11.5□□□□□ -0.57
SRP54-209ENST00000555746 NCBP3Q53F19 620 aaKnown RBP11.35□□□□□ -0.59
SRP54-209ENST00000555746 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
SRP54-209ENST00000555746 CNKSR2Q8WXI2 1034 aa11.24□□□□□ -0.61
SRP54-209ENST00000555746 NPM3O75607 178 aaKnown RBP11.19□□□□□ -0.62
SRP54-209ENST00000555746 MAPK8IP2Q13387 824 aaPredicted RBP11.16□□□□□ -0.62
SRP54-209ENST00000555746 SLC4A1APQ9BWU0 796 aaKnown RBP11.02□□□□□ -0.65
SRP54-209ENST00000555746 DMRT2Q9Y5R5 561 aa11.01□□□□□ -0.65
SRP54-209ENST00000555746 RNF216Q9NWF9 866 aaPredicted RBP10.97□□□□□ -0.65
SRP54-209ENST00000555746 DNAJC5BQ9UF47 199 aa10.94□□□□□ -0.66
SRP54-209ENST00000555746 EHMT2Q96KQ7 1210 aa10.9□□□□□ -0.66
SRP54-209ENST00000555746 HOXD11P31277 338 aaPredicted RBP10.89□□□□□ -0.67
SRP54-209ENST00000555746 CSRNP3Q8WYN3 585 aa10.76□□□□□ -0.69
SRP54-209ENST00000555746 ZBTB22O15209 634 aa10.64□□□□□ -0.71
SRP54-209ENST00000555746 FOXD4L1Q9NU39 408 aa10.59□□□□□ -0.71
SRP54-209ENST00000555746 SLC4A2P04920 1241 aa10.52□□□□□ -0.73
SRP54-209ENST00000555746 DCAF8L1A6NGE4 600 aa10.42□□□□□ -0.74
SRP54-209ENST00000555746 MYCNP04198 464 aaPredicted RBP10.34□□□□□ -0.75
SRP54-209ENST00000555746 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.3□□□□□ -0.76
SRP54-209ENST00000555746 ATXN8OSP0DMR3 200 aa10.23□□□□□ -0.77
SRP54-209ENST00000555746 U3KPZ7 1027 aaPredicted RBP10.2□□□□□ -0.78
SRP54-209ENST00000555746 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.15□□□□□ -0.78
SRP54-209ENST00000555746 HNRNPUL2Q1KMD3 747 aaKnown RBP10.15□□□□□ -0.78
SRP54-209ENST00000555746 SAMD1Q6SPF0 538 aaPredicted RBP10.12□□□□□ -0.79
SRP54-209ENST00000555746 ATF5Q9Y2D1 282 aaPredicted RBP10.02□□□□□ -0.81
SRP54-209ENST00000555746 RNF39Q9H2S5 420 aa10.01□□□□□ -0.81
SRP54-209ENST00000555746 APLP2Q06481 763 aa10□□□□□ -0.81
SRP54-209ENST00000555746 C1QBPQ07021 282 aaKnown RBP9.92□□□□□ -0.82
SRP54-209ENST00000555746 ZNF219Q9P2Y4 722 aaPredicted RBP9.85□□□□□ -0.83
SRP54-209ENST00000555746 SPINK5Q9NQ38 1064 aaPredicted RBP9.83□□□□□ -0.84
SRP54-209ENST00000555746 CAPN15O75808 1086 aa9.75□□□□□ -0.85
SRP54-209ENST00000555746 TRHP20396 242 aaPredicted RBP9.75□□□□□ -0.85
SRP54-209ENST00000555746 FKBP8Q14318 412 aa9.67□□□□□ -0.86
SRP54-209ENST00000555746 POLA2Q14181 598 aa9.66□□□□□ -0.86
SRP54-209ENST00000555746 MKRN4PQ13434 485 aaPredicted RBP9.61□□□□□ -0.87
SRP54-209ENST00000555746 DSG3P32926 999 aa9.6□□□□□ -0.87
SRP54-209ENST00000555746 FBLN2P98095 1184 aa9.58□□□□□ -0.88
SRP54-209ENST00000555746 ABCB7O75027 752 aa9.57□□□□□ -0.88
SRP54-209ENST00000555746 ZBTB12Q9Y330 459 aaPredicted RBP9.56□□□□□ -0.88
SRP54-209ENST00000555746 CACNB1Q02641 598 aaPredicted RBP9.55□□□□□ -0.88
SRP54-209ENST00000555746 SPDYE4A6NLX3 237 aa9.48□□□□□ -0.89
SRP54-209ENST00000555746 PROM2Q8N271 834 aa9.43□□□□□ -0.9
SRP54-209ENST00000555746 SPDYE2BA6NHP3 402 aa9.33□□□□□ -0.92
SRP54-209ENST00000555746 SPDYE6P0CI01 402 aa9.33□□□□□ -0.92
SRP54-209ENST00000555746 SPDYE2Q495Y8 402 aa9.33□□□□□ -0.92
SRP54-209ENST00000555746 OSCARQ8IYS5 282 aa9.33□□□□□ -0.92
SRP54-209ENST00000555746 FBXO3Q9UK99 471 aa9.31□□□□□ -0.92
SRP54-209ENST00000555746 SSUH2Q9Y2M2 353 aa9.29□□□□□ -0.92
SRP54-209ENST00000555746 ZNF692Q9BU19 519 aaPredicted RBP9.28□□□□□ -0.92
SRP54-209ENST00000555746 AMER1Q5JTC6 1135 aaPredicted RBP9.22□□□□□ -0.93
SRP54-209ENST00000555746 RTN4Q9NQC3 1192 aaKnown RBP9.17□□□□□ -0.94
SRP54-209ENST00000555746 VASPP50552 380 aaPredicted RBP9.16□□□□□ -0.94
SRP54-209ENST00000555746 PABPN1Q86U42 306 aaKnown RBP eCLIP9.16□□□□□ -0.94
SRP54-209ENST00000555746 RBM42Q9BTD8 480 aaKnown RBP9.14□□□□□ -0.95
SRP54-209ENST00000555746 STAG3Q9UJ98 1225 aa9.12□□□□□ -0.95
SRP54-209ENST00000555746 AKT1S1Q96B36 256 aa9.08□□□□□ -0.96
SRP54-209ENST00000555746 IFNLR1Q8IU57 520 aaPredicted RBP9.06□□□□□ -0.96
SRP54-209ENST00000555746 SPDYE1Q8NFV5 336 aaPredicted RBP8.98□□□□□ -0.97
SRP54-209ENST00000555746 REM2Q8IYK8 340 aaPredicted RBP8.97□□□□□ -0.97
SRP54-209ENST00000555746 PLCD3Q8N3E9 789 aa8.95□□□□□ -0.98
SRP54-209ENST00000555746 MIER1Q8N108 512 aa8.94□□□□□ -0.98
SRP54-209ENST00000555746 KLHL34Q8N239 644 aa8.91□□□□□ -0.98
SRP54-209ENST00000555746 SPOCK2Q92563 424 aa8.91□□□□□ -0.98
SRP54-209ENST00000555746 PLEKHG5O94827 1062 aa8.89□□□□□ -0.99
SRP54-209ENST00000555746 ZBTB47Q9UFB7 747 aaPredicted RBP8.89□□□□□ -0.99
SRP54-209ENST00000555746 CLEC11AQ9Y240 323 aa8.88□□□□□ -0.99
SRP54-209ENST00000555746 PITPNM1O00562 1244 aa8.86□□□□□ -0.99
SRP54-209ENST00000555746 PRR29P0C7W0 189 aa8.86□□□□□ -0.99
SRP54-209ENST00000555746 POTEHQ6S545 545 aa8.86□□□□□ -0.99
SRP54-209ENST00000555746 PKD2Q13563 968 aa8.84□□□□□ -0.99
SRP54-209ENST00000555746 CREBZFQ9NS37 354 aa8.82□□□□□ -1
SRP54-209ENST00000555746 MNX1P50219 401 aaPredicted RBP8.78□□□□□ -1
SRP54-209ENST00000555746 NUBP1P53384 320 aa8.74□□□□□ -1.01
SRP54-209ENST00000555746 ECM2O94769 699 aaPredicted RBP8.71□□□□□ -1.02
SRP54-209ENST00000555746 TRIM41Q8WV44 630 aa8.7□□□□□ -1.02
SRP54-209ENST00000555746 FXR2P51116 673 aaKnown RBP eCLIP8.69□□□□□ -1.022e-6■□□□□ 8.3
SRP54-209ENST00000555746 GSE1Q14687 1217 aa8.69□□□□□ -1.02
SRP54-209ENST00000555746 CIZ1Q9ULV3 898 aaPredicted RBP8.69□□□□□ -1.02
SRP54-209ENST00000555746 NPM1P06748 294 aaKnown RBP eCLIP8.67□□□□□ -1.02
SRP54-209ENST00000555746 CHADLQ6NUI6 762 aa8.65□□□□□ -1.02
SRP54-209ENST00000555746 CHRDL2Q6WN34 429 aa8.65□□□□□ -1.02
SRP54-209ENST00000555746 FAM212AQ96EL1 285 aa8.64□□□□□ -1.03
SRP54-209ENST00000555746 RGL2O15211 777 aa8.63□□□□□ -1.03
SRP54-209ENST00000555746 RASEFQ8IZ41 740 aa8.63□□□□□ -1.03
SRP54-209ENST00000555746 FARP1Q9Y4F1 1045 aaPredicted RBP8.63□□□□□ -1.03
SRP54-209ENST00000555746 SLC24A1O60721 1099 aa8.62□□□□□ -1.03
SRP54-209ENST00000555746 PRKAR2AP13861 404 aaKnown RBP8.62□□□□□ -1.03
SRP54-209ENST00000555746 DCAF8Q5TAQ9 597 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms